Wall clock time and date at job start Tue Mar 31 2020 23:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81408 * 109.47085 * 2 1 4 4 C 1.81398 * 102.99672 * 179.97438 * 3 2 1 5 5 H 1.08991 * 110.01813 * 53.61136 * 4 3 2 6 6 C 1.54267 * 110.03370 * 292.16298 * 4 3 2 7 7 C 1.54881 * 104.19758 * 217.10979 * 6 4 3 8 8 C 1.54891 * 102.75143 * 37.94367 * 7 6 4 9 9 C 1.53875 * 110.02799 * 175.00003 * 4 3 2 10 10 H 1.09003 * 110.03247 * 238.61348 * 9 4 3 11 11 N 1.46898 * 110.03623 * 0.02562 * 9 4 3 12 12 C 1.46904 * 111.00201 * 205.00167 * 11 9 4 13 13 C 1.50697 * 109.46892 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00521 * 359.72736 * 13 12 11 15 15 N 1.34784 * 119.99774 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99893 * 179.72962 * 15 13 12 17 17 C 1.50697 * 109.47293 * 90.00297 * 16 15 13 18 18 H 1.07997 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00149 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00247 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47614 * 119.99582 * 21 19 17 24 24 H 1.48497 * 109.46911 * 239.99550 * 21 19 17 25 25 C 1.46499 * 119.99971 * 359.72768 * 15 13 12 26 26 C 1.52999 * 109.47276 * 89.99654 * 25 15 13 27 27 C 1.47198 * 109.47424 * 179.97438 * 26 25 15 28 28 N 8.96114 * 147.08285 * 108.44628 * 3 1 2 29 29 H 1.08995 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47460 * 300.00724 * 1 2 3 31 31 H 1.09002 * 109.47029 * 60.00293 * 1 2 3 32 32 H 1.08994 * 109.47575 * 239.99820 * 2 1 3 33 33 H 1.08999 * 109.46569 * 119.99494 * 2 1 3 34 34 H 1.09008 * 110.48335 * 335.78827 * 6 4 3 35 35 H 1.08991 * 110.48522 * 98.29452 * 6 4 3 36 36 H 1.08998 * 110.75786 * 156.25492 * 7 6 4 37 37 H 1.09002 * 110.75774 * 279.63093 * 7 6 4 38 38 H 1.09000 * 110.49200 * 203.37996 * 8 7 6 39 39 H 1.08997 * 110.48722 * 80.73648 * 8 7 6 40 40 H 1.00898 * 111.00447 * 81.04371 * 11 9 4 41 41 H 1.09001 * 109.46900 * 60.00109 * 12 11 9 42 42 H 1.08993 * 109.47169 * 299.99830 * 12 11 9 43 43 H 1.08997 * 109.46865 * 210.00034 * 16 15 13 44 44 H 1.08998 * 109.47058 * 329.99547 * 16 15 13 45 45 H 0.96995 * 120.00744 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.47416 * 209.99869 * 25 15 13 47 47 H 1.09008 * 109.47058 * 330.00468 * 25 15 13 48 48 H 1.08998 * 109.47074 * 300.00425 * 26 25 15 49 49 H 1.09007 * 109.46853 * 59.99785 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2396 0.8599 -0.8234 6 6 4.4000 0.9032 1.3433 7 6 5.7438 1.6153 1.6361 8 6 5.4790 3.0603 1.1453 9 6 4.6232 2.8774 -0.1251 10 1 5.2588 2.8970 -1.0104 11 7 3.6123 3.9401 -0.2075 12 6 4.1461 5.1221 -0.8973 13 6 3.0830 6.1882 -0.9629 14 8 1.9868 5.9816 -0.4868 15 7 3.3487 7.3694 -1.5552 16 6 2.3134 8.4035 -1.6242 17 6 2.3995 9.2829 -0.4035 18 1 3.1501 9.0905 0.3488 19 6 1.5193 10.3325 -0.2465 20 7 0.6049 10.5665 -1.1623 21 14 1.6256 11.4221 1.2670 22 1 2.7313 10.9513 2.1393 23 1 1.8854 12.8237 0.8508 24 1 0.3441 11.3573 2.0145 25 6 4.6730 7.6191 -2.1298 26 6 4.6862 7.1732 -3.5933 27 6 6.0166 7.4247 -4.1709 28 7 7.0418 7.6164 -4.6195 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.6750 1.1186 2.1283 35 1 4.5488 -0.1723 1.2476 36 1 5.9623 1.6041 2.7039 37 1 6.5550 1.1576 1.0699 38 1 6.4176 3.5595 0.9043 39 1 4.9285 3.6241 1.8983 40 1 3.2662 4.1818 0.7089 41 1 4.4477 4.8476 -1.9081 42 1 5.0093 5.5025 -0.3512 43 1 2.4628 9.0081 -2.5188 44 1 1.3313 7.9323 -1.6642 45 1 -0.0141 11.3051 -1.0521 46 1 4.8991 8.6838 -2.0724 47 1 5.4228 7.0577 -1.5723 48 1 4.4601 6.1085 -3.6508 49 1 3.9364 7.7345 -4.1510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348470614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:38 Heat of formation + Delta-G solvation = -34.528420 kcal Electronic energy + Delta-G solvation = -27373.061689 eV Core-core repulsion = 23653.240604 eV Total energy + Delta-G solvation = -3719.821085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77778 -39.37978 -37.95346 -36.63606 -35.20627 -34.71074 -33.49185 -32.11876 -30.13018 -29.76004 -28.52707 -26.17240 -25.26510 -24.34890 -23.89138 -21.72721 -21.14419 -19.90893 -18.77874 -18.31364 -17.97037 -17.50235 -17.07400 -16.71517 -16.39917 -16.14320 -15.94775 -15.64362 -15.54642 -15.06009 -14.78507 -14.73449 -14.46426 -14.37921 -14.02386 -13.74933 -13.57564 -13.50788 -13.32076 -13.25534 -13.04251 -12.90439 -12.67949 -12.58578 -12.54827 -12.41811 -12.28221 -12.14966 -12.01746 -11.90660 -11.81533 -11.61756 -11.58477 -11.49568 -10.57425 -10.46271 -10.29835 -9.40582 -9.16884 -8.27812 -8.15763 -6.28083 0.96815 1.39536 1.42334 1.52464 1.72179 1.86191 1.98736 2.00180 2.29328 2.46205 3.09326 3.16213 3.37730 3.57643 3.67791 3.88339 4.08110 4.12604 4.13036 4.15995 4.22047 4.36935 4.41931 4.45224 4.50995 4.52083 4.58876 4.63169 4.72352 4.77454 4.87125 4.91849 4.98178 4.98531 5.05458 5.09005 5.15648 5.17354 5.22393 5.28338 5.38005 5.43843 5.64907 5.91024 6.09891 6.16284 6.36473 6.62381 6.80527 6.88618 7.38036 7.62897 8.91002 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.003205 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.299424 B = 8733.272399 C =10193.841049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 S -0.243 6.243 4 C -0.051 4.051 5 H 0.096 0.904 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.151 4.151 9 C 0.105 3.895 10 H 0.106 0.894 11 N -0.670 5.670 12 C 0.054 3.946 13 C 0.499 3.501 14 O -0.574 6.574 15 N -0.600 5.600 16 C 0.261 3.739 17 C -0.537 4.537 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.286 1.286 25 C 0.115 3.885 26 C -0.038 4.038 27 C 0.247 3.753 28 N -0.489 5.489 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.344 0.656 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.032 0.968 44 H 0.000 1.000 45 H 0.265 0.735 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.136 0.864 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.336 -21.957 1.695 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.258 4.258 3 S -0.015 6.015 4 C -0.181 4.181 5 H 0.114 0.886 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.191 4.191 9 C -0.006 4.006 10 H 0.124 0.876 11 N -0.302 5.302 12 C -0.078 4.078 13 C 0.288 3.712 14 O -0.453 6.453 15 N -0.332 5.332 16 C 0.140 3.860 17 C -0.576 4.576 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.783 3.217 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.212 1.212 25 C -0.009 4.009 26 C -0.079 4.079 27 C -0.070 4.070 28 N -0.167 5.167 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.019 0.981 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.125 0.875 48 H 0.154 0.846 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.214 -20.958 0.624 23.778 hybrid contribution 0.195 0.280 1.457 1.496 sum 11.409 -20.677 2.081 23.707 Atomic orbital electron populations 1.21448 0.92696 1.02826 1.02146 1.23440 1.00131 0.97529 1.04651 1.88326 1.05799 1.09602 1.97813 1.23980 0.93023 0.99795 1.01316 0.88606 1.22776 0.97805 1.00205 0.94933 1.22382 0.96778 0.94182 1.01687 1.23127 1.00580 0.98387 0.97017 1.22132 0.90668 0.88663 0.99162 0.87568 1.60032 1.35510 1.08449 1.26216 1.21936 0.93972 0.89133 1.02740 1.21235 0.89357 0.83072 0.77581 1.90695 1.26812 1.80190 1.47586 1.48085 1.13923 1.14696 1.56519 1.18745 0.86337 0.84918 0.95983 1.21781 1.16184 1.12692 1.06900 0.92846 1.25734 0.94809 0.99080 0.99291 1.70035 1.19563 1.31144 1.35928 0.85510 0.77861 0.78707 0.79580 1.19162 1.19885 1.21206 1.21495 0.84242 1.03518 0.91690 1.19836 0.85781 1.06413 0.95911 1.29103 0.94251 0.91474 0.92207 1.81223 1.13766 1.10888 1.10825 0.89677 0.92889 0.92960 0.90096 0.90015 0.91665 0.90245 0.90834 0.89794 0.89869 0.92498 0.83615 0.85632 0.90364 0.95013 0.98144 0.92649 0.89991 0.87536 0.84646 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.92 71.98 0.71 -1.68 16 2 C -0.11 -1.96 6.55 71.98 0.47 -1.49 16 3 S -0.24 -5.97 19.26 -56.49 -1.09 -7.05 16 4 C -0.05 -0.88 3.42 31.32 0.11 -0.77 16 5 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 6 C -0.12 -1.63 6.26 31.67 0.20 -1.43 16 7 C -0.11 -1.28 6.91 31.88 0.22 -1.06 16 8 C -0.15 -2.18 6.45 31.67 0.20 -1.98 16 9 C 0.10 1.77 3.22 45.64 0.15 1.92 16 10 H 0.11 1.42 7.81 -2.39 -0.02 1.41 16 11 N -0.67 -16.62 4.03 -491.83 -1.98 -18.60 16 12 C 0.05 1.24 4.55 85.56 0.39 1.63 16 13 C 0.50 18.14 7.71 87.65 0.68 18.82 16 14 O -0.57 -27.92 15.79 -3.04 -0.05 -27.97 16 15 N -0.60 -21.56 2.46 -826.16 -2.03 -23.59 16 16 C 0.26 12.80 5.16 85.63 0.44 13.25 16 17 C -0.54 -29.21 9.39 25.60 0.24 -28.97 16 18 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 19 C 0.01 0.55 5.46 84.65 0.46 1.01 16 20 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16 21 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 C 0.12 2.77 5.17 86.38 0.45 3.22 16 26 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 27 C 0.25 5.27 15.43 89.45 1.38 6.65 16 28 N -0.49 -13.29 18.53 20.00 0.37 -12.92 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.12 7.81 -2.38 -0.02 1.10 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16 40 H 0.34 10.20 7.70 -89.70 -0.69 9.51 16 41 H 0.13 2.11 7.10 -2.39 -0.02 2.09 16 42 H 0.08 1.46 7.39 -2.39 -0.02 1.44 16 43 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 44 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 45 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16 46 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 47 H 0.11 1.88 6.44 -2.38 -0.02 1.86 16 48 H 0.14 1.78 7.20 -2.39 -0.02 1.76 16 49 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -75.35 414.09 4.05 -71.29 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.24 Total: 18.34 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.27 Total: 8.58 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.36 Total: -109.27 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -1.09 Total: -7.05 kcal Total: -75.35 4.05 -71.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348470614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.766 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds