Wall clock time and date at job start Tue Mar 31 2020 23:16:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 S 1.81408 * 109.47085 * 2 1
4 4 C 1.81398 * 102.99672 * 179.97438 * 3 2 1
5 5 H 1.08991 * 110.01813 * 53.61136 * 4 3 2
6 6 C 1.54267 * 110.03370 * 292.16298 * 4 3 2
7 7 C 1.54881 * 104.19758 * 217.10979 * 6 4 3
8 8 C 1.54891 * 102.75143 * 37.94367 * 7 6 4
9 9 C 1.53875 * 110.02799 * 175.00003 * 4 3 2
10 10 H 1.09003 * 110.03247 * 238.61348 * 9 4 3
11 11 N 1.46898 * 110.03623 * 0.02562 * 9 4 3
12 12 C 1.46904 * 111.00201 * 205.00167 * 11 9 4
13 13 C 1.50697 * 109.46892 * 179.97438 * 12 11 9
14 14 O 1.21283 * 120.00521 * 359.72736 * 13 12 11
15 15 N 1.34784 * 119.99774 * 179.97438 * 13 12 11
16 16 C 1.46499 * 119.99893 * 179.72962 * 15 13 12
17 17 C 1.50697 * 109.47293 * 90.00297 * 16 15 13
18 18 H 1.07997 * 120.00010 * 359.97438 * 17 16 15
19 19 C 1.37875 * 120.00091 * 180.02562 * 17 16 15
20 20 N 1.31517 * 120.00149 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 120.00247 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.47151 * 359.97438 * 21 19 17
23 23 H 1.48493 * 109.47614 * 119.99582 * 21 19 17
24 24 H 1.48497 * 109.46911 * 239.99550 * 21 19 17
25 25 C 1.46499 * 119.99971 * 359.72768 * 15 13 12
26 26 C 1.52999 * 109.47276 * 89.99654 * 25 15 13
27 27 C 1.47198 * 109.47424 * 179.97438 * 26 25 15
28 28 N 8.96114 * 147.08285 * 108.44628 * 3 1 2
29 29 H 1.08995 * 109.47483 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47460 * 300.00724 * 1 2 3
31 31 H 1.09002 * 109.47029 * 60.00293 * 1 2 3
32 32 H 1.08994 * 109.47575 * 239.99820 * 2 1 3
33 33 H 1.08999 * 109.46569 * 119.99494 * 2 1 3
34 34 H 1.09008 * 110.48335 * 335.78827 * 6 4 3
35 35 H 1.08991 * 110.48522 * 98.29452 * 6 4 3
36 36 H 1.08998 * 110.75786 * 156.25492 * 7 6 4
37 37 H 1.09002 * 110.75774 * 279.63093 * 7 6 4
38 38 H 1.09000 * 110.49200 * 203.37996 * 8 7 6
39 39 H 1.08997 * 110.48722 * 80.73648 * 8 7 6
40 40 H 1.00898 * 111.00447 * 81.04371 * 11 9 4
41 41 H 1.09001 * 109.46900 * 60.00109 * 12 11 9
42 42 H 1.08993 * 109.47169 * 299.99830 * 12 11 9
43 43 H 1.08997 * 109.46865 * 210.00034 * 16 15 13
44 44 H 1.08998 * 109.47058 * 329.99547 * 16 15 13
45 45 H 0.96995 * 120.00744 * 180.02562 * 20 19 17
46 46 H 1.08998 * 109.47416 * 209.99869 * 25 15 13
47 47 H 1.09008 * 109.47058 * 330.00468 * 25 15 13
48 48 H 1.08998 * 109.47074 * 300.00425 * 26 25 15
49 49 H 1.09007 * 109.46853 * 59.99785 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 6 3.9371 1.5058 0.0008
5 1 4.2396 0.8599 -0.8234
6 6 4.4000 0.9032 1.3433
7 6 5.7438 1.6153 1.6361
8 6 5.4790 3.0603 1.1453
9 6 4.6232 2.8774 -0.1251
10 1 5.2588 2.8970 -1.0104
11 7 3.6123 3.9401 -0.2075
12 6 4.1461 5.1221 -0.8973
13 6 3.0830 6.1882 -0.9629
14 8 1.9868 5.9816 -0.4868
15 7 3.3487 7.3694 -1.5552
16 6 2.3134 8.4035 -1.6242
17 6 2.3995 9.2829 -0.4035
18 1 3.1501 9.0905 0.3488
19 6 1.5193 10.3325 -0.2465
20 7 0.6049 10.5665 -1.1623
21 14 1.6256 11.4221 1.2670
22 1 2.7313 10.9513 2.1393
23 1 1.8854 12.8237 0.8508
24 1 0.3441 11.3573 2.0145
25 6 4.6730 7.6191 -2.1298
26 6 4.6862 7.1732 -3.5933
27 6 6.0166 7.4247 -4.1709
28 7 7.0418 7.6164 -4.6195
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8898
31 1 -0.3633 0.5138 -0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8932 -0.5138 0.8901
34 1 3.6750 1.1186 2.1283
35 1 4.5488 -0.1723 1.2476
36 1 5.9623 1.6041 2.7039
37 1 6.5550 1.1576 1.0699
38 1 6.4176 3.5595 0.9043
39 1 4.9285 3.6241 1.8983
40 1 3.2662 4.1818 0.7089
41 1 4.4477 4.8476 -1.9081
42 1 5.0093 5.5025 -0.3512
43 1 2.4628 9.0081 -2.5188
44 1 1.3313 7.9323 -1.6642
45 1 -0.0141 11.3051 -1.0521
46 1 4.8991 8.6838 -2.0724
47 1 5.4228 7.0577 -1.5723
48 1 4.4601 6.1085 -3.6508
49 1 3.9364 7.7345 -4.1510
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348470614.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:16:38
Heat of formation + Delta-G solvation = -34.528420 kcal
Electronic energy + Delta-G solvation = -27373.061689 eV
Core-core repulsion = 23653.240604 eV
Total energy + Delta-G solvation = -3719.821085 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.77778 -39.37978 -37.95346 -36.63606 -35.20627 -34.71074 -33.49185 -32.11876
-30.13018 -29.76004 -28.52707 -26.17240 -25.26510 -24.34890 -23.89138 -21.72721
-21.14419 -19.90893 -18.77874 -18.31364 -17.97037 -17.50235 -17.07400 -16.71517
-16.39917 -16.14320 -15.94775 -15.64362 -15.54642 -15.06009 -14.78507 -14.73449
-14.46426 -14.37921 -14.02386 -13.74933 -13.57564 -13.50788 -13.32076 -13.25534
-13.04251 -12.90439 -12.67949 -12.58578 -12.54827 -12.41811 -12.28221 -12.14966
-12.01746 -11.90660 -11.81533 -11.61756 -11.58477 -11.49568 -10.57425 -10.46271
-10.29835 -9.40582 -9.16884 -8.27812 -8.15763 -6.28083 0.96815 1.39536
1.42334 1.52464 1.72179 1.86191 1.98736 2.00180 2.29328 2.46205
3.09326 3.16213 3.37730 3.57643 3.67791 3.88339 4.08110 4.12604
4.13036 4.15995 4.22047 4.36935 4.41931 4.45224 4.50995 4.52083
4.58876 4.63169 4.72352 4.77454 4.87125 4.91849 4.98178 4.98531
5.05458 5.09005 5.15648 5.17354 5.22393 5.28338 5.38005 5.43843
5.64907 5.91024 6.09891 6.16284 6.36473 6.62381 6.80527 6.88618
7.38036 7.62897 8.91002
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.008810 B = 0.003205 C = 0.002746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3177.299424 B = 8733.272399 C =10193.841049
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.109 4.109
3 S -0.243 6.243
4 C -0.051 4.051
5 H 0.096 0.904
6 C -0.118 4.118
7 C -0.111 4.111
8 C -0.151 4.151
9 C 0.105 3.895
10 H 0.106 0.894
11 N -0.670 5.670
12 C 0.054 3.946
13 C 0.499 3.501
14 O -0.574 6.574
15 N -0.600 5.600
16 C 0.261 3.739
17 C -0.537 4.537
18 H 0.053 0.947
19 C 0.010 3.990
20 N -0.927 5.927
21 Si 0.958 3.042
22 H -0.267 1.267
23 H -0.273 1.273
24 H -0.286 1.286
25 C 0.115 3.885
26 C -0.038 4.038
27 C 0.247 3.753
28 N -0.489 5.489
29 H 0.085 0.915
30 H 0.052 0.948
31 H 0.051 0.949
32 H 0.080 0.920
33 H 0.081 0.919
34 H 0.065 0.935
35 H 0.079 0.921
36 H 0.073 0.927
37 H 0.083 0.917
38 H 0.083 0.917
39 H 0.056 0.944
40 H 0.344 0.656
41 H 0.126 0.874
42 H 0.079 0.921
43 H 0.032 0.968
44 H 0.000 1.000
45 H 0.265 0.735
46 H 0.082 0.918
47 H 0.107 0.893
48 H 0.136 0.864
49 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.336 -21.957 1.695 24.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.258 4.258
3 S -0.015 6.015
4 C -0.181 4.181
5 H 0.114 0.886
6 C -0.157 4.157
7 C -0.150 4.150
8 C -0.191 4.191
9 C -0.006 4.006
10 H 0.124 0.876
11 N -0.302 5.302
12 C -0.078 4.078
13 C 0.288 3.712
14 O -0.453 6.453
15 N -0.332 5.332
16 C 0.140 3.860
17 C -0.576 4.576
18 H 0.072 0.928
19 C -0.189 4.189
20 N -0.567 5.567
21 Si 0.783 3.217
22 H -0.192 1.192
23 H -0.199 1.199
24 H -0.212 1.212
25 C -0.009 4.009
26 C -0.079 4.079
27 C -0.070 4.070
28 N -0.167 5.167
29 H 0.103 0.897
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.099 0.901
33 H 0.100 0.900
34 H 0.083 0.917
35 H 0.098 0.902
36 H 0.092 0.908
37 H 0.102 0.898
38 H 0.101 0.899
39 H 0.075 0.925
40 H 0.164 0.836
41 H 0.144 0.856
42 H 0.096 0.904
43 H 0.050 0.950
44 H 0.019 0.981
45 H 0.074 0.926
46 H 0.100 0.900
47 H 0.125 0.875
48 H 0.154 0.846
49 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 11.214 -20.958 0.624 23.778
hybrid contribution 0.195 0.280 1.457 1.496
sum 11.409 -20.677 2.081 23.707
Atomic orbital electron populations
1.21448 0.92696 1.02826 1.02146 1.23440 1.00131 0.97529 1.04651
1.88326 1.05799 1.09602 1.97813 1.23980 0.93023 0.99795 1.01316
0.88606 1.22776 0.97805 1.00205 0.94933 1.22382 0.96778 0.94182
1.01687 1.23127 1.00580 0.98387 0.97017 1.22132 0.90668 0.88663
0.99162 0.87568 1.60032 1.35510 1.08449 1.26216 1.21936 0.93972
0.89133 1.02740 1.21235 0.89357 0.83072 0.77581 1.90695 1.26812
1.80190 1.47586 1.48085 1.13923 1.14696 1.56519 1.18745 0.86337
0.84918 0.95983 1.21781 1.16184 1.12692 1.06900 0.92846 1.25734
0.94809 0.99080 0.99291 1.70035 1.19563 1.31144 1.35928 0.85510
0.77861 0.78707 0.79580 1.19162 1.19885 1.21206 1.21495 0.84242
1.03518 0.91690 1.19836 0.85781 1.06413 0.95911 1.29103 0.94251
0.91474 0.92207 1.81223 1.13766 1.10888 1.10825 0.89677 0.92889
0.92960 0.90096 0.90015 0.91665 0.90245 0.90834 0.89794 0.89869
0.92498 0.83615 0.85632 0.90364 0.95013 0.98144 0.92649 0.89991
0.87536 0.84646 0.86448
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.40 9.92 71.98 0.71 -1.68 16
2 C -0.11 -1.96 6.55 71.98 0.47 -1.49 16
3 S -0.24 -5.97 19.26 -56.49 -1.09 -7.05 16
4 C -0.05 -0.88 3.42 31.32 0.11 -0.77 16
5 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
6 C -0.12 -1.63 6.26 31.67 0.20 -1.43 16
7 C -0.11 -1.28 6.91 31.88 0.22 -1.06 16
8 C -0.15 -2.18 6.45 31.67 0.20 -1.98 16
9 C 0.10 1.77 3.22 45.64 0.15 1.92 16
10 H 0.11 1.42 7.81 -2.39 -0.02 1.41 16
11 N -0.67 -16.62 4.03 -491.83 -1.98 -18.60 16
12 C 0.05 1.24 4.55 85.56 0.39 1.63 16
13 C 0.50 18.14 7.71 87.65 0.68 18.82 16
14 O -0.57 -27.92 15.79 -3.04 -0.05 -27.97 16
15 N -0.60 -21.56 2.46 -826.16 -2.03 -23.59 16
16 C 0.26 12.80 5.16 85.63 0.44 13.25 16
17 C -0.54 -29.21 9.39 25.60 0.24 -28.97 16
18 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16
19 C 0.01 0.55 5.46 84.65 0.46 1.01 16
20 N -0.93 -54.44 13.29 21.45 0.28 -54.15 16
21 Si 0.96 44.05 29.54 68.60 2.03 46.07 16
22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16
25 C 0.12 2.77 5.17 86.38 0.45 3.22 16
26 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16
27 C 0.25 5.27 15.43 89.45 1.38 6.65 16
28 N -0.49 -13.29 18.53 20.00 0.37 -12.92 16
29 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16
30 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16
31 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16
32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.06 1.12 7.81 -2.38 -0.02 1.10 16
35 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16
36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
39 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16
40 H 0.34 10.20 7.70 -89.70 -0.69 9.51 16
41 H 0.13 2.11 7.10 -2.39 -0.02 2.09 16
42 H 0.08 1.46 7.39 -2.39 -0.02 1.44 16
43 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16
44 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16
45 H 0.26 14.70 8.31 -92.71 -0.77 13.92 16
46 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16
47 H 0.11 1.88 6.44 -2.38 -0.02 1.86 16
48 H 0.14 1.78 7.20 -2.39 -0.02 1.76 16
49 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16
Total: -1.00 -75.35 414.09 4.05 -71.29
By element:
Atomic # 1 Polarization: 18.10 SS G_CDS: 0.24 Total: 18.34 kcal
Atomic # 6 Polarization: 2.31 SS G_CDS: 6.27 Total: 8.58 kcal
Atomic # 7 Polarization: -105.91 SS G_CDS: -3.36 Total: -109.27 kcal
Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal
Atomic # 16 Polarization: -5.97 SS G_CDS: -1.09 Total: -7.05 kcal
Total: -75.35 4.05 -71.29 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348470614.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.766 kcal
(2) G-P(sol) polarization free energy of solvation -75.345 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.528 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds