Wall clock time and date at job start Tue Mar 31 2020 23:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32410 * 120.35310 * 2 1 4 4 C 1.32517 * 120.93646 * 180.02562 * 3 2 1 5 5 C 1.48416 * 119.17593 * 180.27902 * 4 3 2 6 6 C 1.39723 * 120.90831 * 179.45036 * 5 4 3 7 7 C 1.38064 * 119.02339 * 179.77303 * 6 5 4 8 8 N 1.31881 * 120.87273 * 0.50952 * 7 6 5 9 9 C 1.31868 * 122.01353 * 359.73754 * 8 7 6 10 10 C 1.38061 * 120.88166 * 359.97438 * 9 8 7 11 11 N 1.32550 * 121.65007 * 359.97438 * 4 3 2 12 12 C 1.32814 * 120.61201 * 0.02562 * 11 4 3 13 13 N 1.38555 * 120.48656 * 179.97438 * 12 11 4 14 14 C 1.46889 * 111.00017 * 60.35517 * 13 12 11 15 15 C 1.53238 * 109.34113 * 172.74548 * 14 13 12 16 16 N 1.47082 * 108.51996 * 53.82690 * 15 14 13 17 17 C 1.36946 * 120.87842 * 128.83620 * 16 15 14 18 18 H 1.08001 * 119.99504 * 212.94267 * 17 16 15 19 19 C 1.38806 * 119.99776 * 32.95097 * 17 16 15 20 20 N 1.31615 * 120.00568 * 11.55995 * 19 17 16 21 21 Si 1.86805 * 119.99625 * 191.55886 * 19 17 16 22 22 H 1.48495 * 109.47121 * 59.99855 * 21 19 17 23 23 H 1.48507 * 109.46841 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47103 * 299.99525 * 21 19 17 25 25 C 1.47082 * 118.23901 * 308.82036 * 16 15 14 26 26 C 1.46901 * 110.99651 * 296.05308 * 13 12 11 27 27 C 1.38178 * 120.35227 * 180.02562 * 2 1 3 28 28 C 1.50707 * 120.76078 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47794 * 269.98565 * 1 2 3 30 30 H 1.09004 * 109.46638 * 29.98341 * 1 2 3 31 31 H 1.09004 * 109.47220 * 149.97505 * 1 2 3 32 32 H 1.08001 * 120.48956 * 0.02562 * 6 5 4 33 33 H 1.07995 * 119.56301 * 180.21891 * 7 6 5 34 34 H 1.08005 * 119.56091 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.48694 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.49694 * 292.70579 * 14 13 12 37 37 H 1.09000 * 109.50062 * 52.78799 * 14 13 12 38 38 H 1.08999 * 109.63140 * 294.12395 * 15 14 13 39 39 H 1.09000 * 109.63615 * 173.54005 * 15 14 13 40 40 H 0.96996 * 120.00580 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.62518 * 291.47062 * 25 16 15 42 42 H 1.08997 * 109.62711 * 170.89328 * 25 16 15 43 43 H 1.08994 * 109.49179 * 307.21216 * 26 13 12 44 44 H 1.08997 * 109.49364 * 67.29621 * 26 13 12 45 45 H 1.09004 * 109.47045 * 277.29361 * 28 27 2 46 46 H 1.08995 * 109.46909 * 37.28996 * 28 27 2 47 47 H 1.08990 * 109.47301 * 157.29457 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1761 1.1426 0.0000 4 6 3.5012 1.1561 -0.0005 5 6 4.2115 2.4592 0.0058 6 6 5.6076 2.5157 0.0170 7 6 6.2281 3.7490 0.0178 8 7 5.5211 4.8623 0.0183 9 6 4.2025 4.8530 0.0129 10 6 3.5023 3.6631 0.0059 11 7 4.2082 0.0349 -0.0005 12 6 3.6021 -1.1469 -0.0005 13 7 4.3437 -2.3173 -0.0011 14 6 5.1988 -2.3992 1.1904 15 6 5.8620 -3.7795 1.2452 16 7 6.5508 -4.0179 -0.0324 17 6 7.8617 -4.4129 -0.0611 18 1 8.5040 -4.0945 -0.8689 19 6 8.3649 -5.2225 0.9480 20 7 7.5443 -5.7960 1.8024 21 14 10.2068 -5.4980 1.0932 22 1 10.8869 -4.1952 1.3058 23 1 10.4838 -6.3952 2.2437 24 1 10.7137 -6.1233 -0.1547 25 6 5.7941 -3.8213 -1.2782 26 6 5.1337 -2.4392 -1.2336 27 6 2.2053 -1.1924 -0.0005 28 6 1.4772 -2.5119 -0.0017 29 1 -0.3635 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 6.1927 1.6079 0.0208 33 1 7.3067 3.8027 0.0228 34 1 3.6630 5.7887 0.0139 35 1 2.4223 3.6630 0.0011 36 1 5.9676 -1.6280 1.1401 37 1 4.5927 -2.2512 2.0841 38 1 5.1018 -4.5452 1.3996 39 1 6.5842 -3.8068 2.0611 40 1 7.8959 -6.3614 2.5077 41 1 5.0274 -4.5909 -1.3662 42 1 6.4714 -3.8761 -2.1305 43 1 4.4802 -2.3204 -2.0977 44 1 5.9033 -1.6676 -1.2501 45 1 1.1871 -2.7677 1.0174 46 1 0.5861 -2.4347 -0.6246 47 1 2.1318 -3.2877 -0.3986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354681866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:14 Heat of formation + Delta-G solvation = 122.764150 kcal Electronic energy + Delta-G solvation = -29338.690436 eV Core-core repulsion = 25522.538869 eV Total energy + Delta-G solvation = -3816.151567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44332 -40.02268 -38.24532 -35.17157 -35.07249 -32.80033 -32.21382 -31.40700 -30.91210 -30.05661 -29.20593 -27.48761 -26.23315 -24.09515 -23.77884 -23.25290 -22.72566 -21.56341 -21.50336 -19.36182 -18.04225 -17.68129 -16.76212 -15.98410 -15.82588 -15.67187 -15.58137 -14.82202 -14.51851 -14.33701 -14.07486 -14.03442 -13.87076 -13.71809 -13.54040 -13.29518 -13.24669 -13.08433 -12.93933 -12.71712 -12.37971 -11.95061 -11.78552 -11.63209 -11.16106 -10.99569 -10.81908 -10.80374 -10.52833 -10.35661 -10.31624 -10.06726 -9.88937 -9.83360 -9.70144 -9.30100 -9.27666 -8.76342 -8.58818 -8.33142 -6.66101 -5.84326 -3.33085 0.24865 0.99257 1.00916 1.51781 3.35548 3.41118 3.42109 3.46629 3.47660 3.71619 3.90957 4.01941 4.31105 4.44813 4.73181 4.73725 4.79416 4.94471 5.01240 5.02404 5.09109 5.26066 5.29566 5.35339 5.37579 5.49241 5.55958 5.66884 5.68004 5.75205 5.76767 5.80689 5.91923 6.01048 6.07300 6.13856 6.20701 6.23537 6.37971 6.41242 6.50549 6.54022 6.80092 6.98298 7.04965 7.41039 7.48342 7.55007 7.75365 7.78785 8.01997 8.41053 9.15612 9.76091 10.37411 11.24761 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003403 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.312977 B = 8226.197087 C =10244.643901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.169 3.831 3 N -0.515 5.515 4 C 0.351 3.649 5 C 0.008 3.992 6 C -0.126 4.126 7 C 0.092 3.908 8 N -0.479 5.479 9 C 0.088 3.912 10 C -0.130 4.130 11 N -0.531 5.531 12 C 0.358 3.642 13 N -0.480 5.480 14 C 0.042 3.958 15 C 0.184 3.816 16 N -0.592 5.592 17 C -0.258 4.258 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.151 3.849 26 C 0.050 3.950 27 C -0.158 4.158 28 C -0.100 4.100 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.087 0.913 40 H 0.256 0.744 41 H 0.028 0.972 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.976 14.306 -3.402 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.023 3.977 3 N -0.229 5.229 4 C 0.084 3.916 5 C -0.002 4.002 6 C -0.147 4.147 7 C -0.064 4.064 8 N -0.188 5.188 9 C -0.069 4.069 10 C -0.152 4.152 11 N -0.248 5.248 12 C 0.120 3.880 13 N -0.204 5.204 14 C -0.085 4.085 15 C 0.058 3.942 16 N -0.316 5.316 17 C -0.388 4.388 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.024 3.976 26 C -0.078 4.078 27 C -0.164 4.164 28 C -0.157 4.157 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.323 15.379 -3.240 20.604 hybrid contribution 0.664 -1.174 0.185 1.362 sum -12.658 14.205 -3.055 19.270 Atomic orbital electron populations 1.20783 0.87636 1.04026 1.03651 1.21447 0.97407 0.87143 0.91692 1.68033 1.08815 1.30428 1.15673 1.20782 0.86022 0.91182 0.93588 1.18425 0.92822 0.89747 0.99182 1.22386 0.94042 1.00488 0.97800 1.22758 1.00575 0.87136 0.95967 1.67578 1.08487 1.31894 1.10876 1.22711 0.89955 0.97717 0.96482 1.22284 1.02217 0.91858 0.98812 1.68514 1.42382 0.98944 1.14996 1.20409 0.91052 0.87885 0.88634 1.60220 1.28456 1.26138 1.05545 1.22989 0.94049 1.02591 0.88913 1.20818 0.94799 0.88681 0.89950 1.44011 1.09188 1.78877 0.99483 1.19088 0.85303 1.24426 1.09977 0.91895 1.25198 0.97955 0.96245 0.99627 1.69959 1.33148 1.32780 1.18714 0.86355 0.85206 0.77737 0.77326 1.20916 1.21552 1.20770 1.20992 0.94168 0.91580 0.90845 1.22710 0.95116 1.01113 0.88841 1.21383 0.93976 0.98022 1.03060 1.20631 0.99479 0.93109 1.02497 0.89710 0.90139 0.89723 0.83413 0.82199 0.82399 0.83605 0.93798 0.92366 0.95149 0.89534 0.93442 0.95417 0.92066 0.92189 0.93620 0.90776 0.91501 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 9.83 36.01 0.35 -0.48 16 2 C 0.17 2.10 6.81 -82.36 -0.56 1.54 16 3 N -0.51 -7.18 9.48 -7.47 -0.07 -7.26 16 4 C 0.35 5.37 7.57 -157.00 -1.19 4.18 16 5 C 0.01 0.11 5.91 -104.59 -0.62 -0.50 16 6 C -0.13 -1.64 9.65 -39.09 -0.38 -2.02 16 7 C 0.09 1.08 11.17 -17.59 -0.20 0.88 16 8 N -0.48 -5.85 10.34 -13.32 -0.14 -5.99 16 9 C 0.09 0.93 11.17 -17.60 -0.20 0.73 16 10 C -0.13 -1.48 9.65 -39.09 -0.38 -1.86 16 11 N -0.53 -8.88 9.07 -10.36 -0.09 -8.98 16 12 C 0.36 5.85 5.27 -154.87 -0.82 5.04 16 13 N -0.48 -8.49 3.57 -172.74 -0.62 -9.11 16 14 C 0.04 0.83 5.39 -3.71 -0.02 0.81 16 15 C 0.18 4.29 5.35 -3.60 -0.02 4.27 16 16 N -0.59 -14.56 3.01 -172.01 -0.52 -15.08 16 17 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 18 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 19 C 0.01 0.25 5.02 -17.43 -0.09 0.16 16 20 N -0.90 -25.61 11.30 55.49 0.63 -24.98 16 21 Si 0.90 21.34 29.57 -169.99 -5.03 16.31 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.15 3.10 6.69 -3.60 -0.02 3.08 16 26 C 0.05 0.91 5.44 -3.70 -0.02 0.89 16 27 C -0.16 -2.16 5.94 -104.07 -0.62 -2.78 16 28 C -0.10 -1.10 9.38 36.01 0.34 -0.76 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.54 6.18 -51.93 -0.32 0.22 16 32 H 0.15 2.02 7.61 -52.49 -0.40 1.62 16 33 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.15 1.47 7.61 -52.48 -0.40 1.07 16 36 H 0.04 0.92 8.06 -51.93 -0.42 0.50 16 37 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 2.25 6.45 -51.93 -0.33 1.91 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.22 7.95 -51.93 -0.41 0.80 16 43 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 44 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.56 6.38 -51.93 -0.33 0.23 16 47 H 0.09 1.15 7.35 -51.93 -0.38 0.77 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -31.02 382.36 -11.41 -42.43 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.77 Total: 0.82 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -4.57 Total: 6.07 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.81 Total: -71.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.02 -11.41 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354681866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.194 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds