Wall clock time and date at job start Tue Mar 31 2020 23:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34229 * 116.99932 * 2 1 4 4 O 1.20829 * 119.99912 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00024 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.43597 * 302.54018 * 5 3 2 7 7 C 1.54811 * 110.48841 * 65.23362 * 5 3 2 8 8 C 1.54998 * 102.09542 * 139.55840 * 7 5 3 9 9 O 1.44381 * 103.48783 * 322.97472 * 8 7 5 10 10 C 1.43753 * 106.97723 * 40.05894 * 9 8 7 11 11 H 1.08999 * 110.00562 * 213.99345 * 10 9 8 12 12 C 1.53002 * 109.87448 * 92.91138 * 10 9 8 13 13 C 1.53039 * 109.45600 * 176.72377 * 12 10 9 14 14 C 1.53200 * 109.33703 * 178.59839 * 13 12 10 15 15 N 1.46990 * 108.73909 * 54.62077 * 14 13 12 16 16 C 1.34773 * 120.61683 * 126.38447 * 15 14 13 17 17 O 1.21277 * 120.00273 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.99828 * 0.02838 * 16 15 14 19 19 C 1.53003 * 109.47089 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46939 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99948 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00009 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00304 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00272 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47139 * 89.99372 * 24 22 20 26 26 H 1.48498 * 109.47365 * 209.99967 * 24 22 20 27 27 H 1.48501 * 109.46397 * 329.99943 * 24 22 20 28 28 C 1.46935 * 118.75619 * 306.41171 * 15 14 13 29 29 C 1.53040 * 109.46189 * 56.65350 * 12 10 9 30 30 H 1.09004 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47439 * 300.00239 * 1 2 3 32 32 H 1.09002 * 109.46534 * 60.00352 * 1 2 3 33 33 H 1.08999 * 110.90394 * 257.75372 * 7 5 3 34 34 H 1.08995 * 110.90510 * 21.31996 * 7 5 3 35 35 H 1.08994 * 110.61650 * 81.47108 * 8 7 5 36 36 H 1.08999 * 110.61693 * 204.47468 * 8 7 5 37 37 H 1.09003 * 109.44674 * 296.68836 * 12 10 9 38 38 H 1.08997 * 109.50038 * 298.56299 * 13 12 10 39 39 H 1.08996 * 109.49937 * 58.63123 * 13 12 10 40 40 H 1.08996 * 109.58343 * 174.44251 * 14 13 12 41 41 H 1.08999 * 109.58296 * 294.86515 * 14 13 12 42 42 H 1.09000 * 109.46711 * 299.99378 * 18 16 15 43 43 H 1.08999 * 109.47308 * 59.99433 * 18 16 15 44 44 H 1.09000 * 109.47127 * 299.99479 * 19 18 16 45 45 H 1.08999 * 109.47218 * 59.99733 * 19 18 16 46 46 H 0.97000 * 120.00114 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.58013 * 293.81744 * 28 15 14 48 48 H 1.09000 * 109.58769 * 173.39580 * 28 15 14 49 49 H 1.08996 * 109.49703 * 301.33977 * 29 12 10 50 50 H 1.08997 * 109.49507 * 61.40349 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9748 0.7464 0.8619 7 6 4.1398 0.6963 -1.3159 8 6 5.2835 1.6918 -1.6371 9 8 4.7454 2.9670 -1.2260 10 6 4.0293 2.7447 0.0005 11 1 3.1643 3.4058 0.0523 12 6 4.9512 2.9999 1.1946 13 6 4.1585 2.8403 2.4939 14 6 5.0920 3.0619 3.6882 15 7 5.7490 4.3682 3.5380 16 6 5.6965 5.2809 4.5283 17 8 6.2423 6.3554 4.3923 18 6 4.9597 4.9662 5.8047 19 6 5.0532 6.1613 6.7554 20 6 4.3159 5.8469 8.0315 21 1 3.8296 4.8901 8.1525 22 6 4.2630 6.7801 9.0450 23 7 3.6191 6.5059 10.1585 24 14 5.1046 8.4347 8.8361 25 1 4.1526 9.4016 8.2326 26 1 5.5459 8.9365 10.1622 27 1 6.2843 8.2811 7.9472 28 6 6.4636 4.6605 2.2878 29 6 5.5143 4.4204 1.1097 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8901 33 1 4.5313 -0.3090 -1.1608 34 1 3.3864 0.7011 -2.1035 35 1 6.1768 1.4488 -1.0618 36 1 5.5021 1.6937 -2.7050 37 1 5.7718 2.2825 1.1794 38 1 3.3527 3.5739 2.5209 39 1 3.7378 1.8360 2.5424 40 1 4.5134 3.0471 4.6118 41 1 5.8455 2.2748 3.7139 42 1 3.9131 4.7620 5.5791 43 1 5.4072 4.0913 6.2763 44 1 6.1000 6.3651 6.9810 45 1 4.6060 7.0365 6.2840 46 1 3.5815 7.1626 10.8714 47 1 7.3290 4.0036 2.1995 48 1 6.7900 5.7004 2.2880 49 1 6.0590 4.5405 0.1732 50 1 4.6958 5.1391 1.1492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358620457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:56 Heat of formation + Delta-G solvation = -178.321428 kcal Electronic energy + Delta-G solvation = -30509.054412 eV Core-core repulsion = 26307.952373 eV Total energy + Delta-G solvation = -4201.102040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49932 -40.13814 -39.38151 -37.11293 -36.89444 -33.56913 -33.47669 -32.98089 -31.62505 -30.74730 -29.41325 -28.20613 -26.54662 -25.32298 -23.56267 -23.03247 -22.51465 -21.33475 -20.54683 -20.26407 -18.77315 -18.12528 -17.39219 -17.26242 -17.02314 -16.40234 -16.28151 -15.91290 -15.43529 -15.24260 -15.03820 -14.47948 -14.22216 -14.02027 -13.88357 -13.65300 -13.61117 -13.38344 -13.04593 -12.82910 -12.55281 -12.50258 -12.37804 -12.31921 -12.27625 -11.77774 -11.65743 -11.45837 -11.35295 -11.30392 -11.24998 -10.95073 -10.93184 -10.71171 -10.54175 -10.10242 -10.00087 -9.94700 -9.75787 -9.19819 -9.10132 -8.50310 -8.44708 -6.01261 -3.99795 1.71954 2.16972 3.12275 3.24217 3.36175 3.40021 3.46375 3.57816 3.84038 4.11090 4.12285 4.47877 4.51795 4.53082 4.58903 4.63946 4.67276 4.69271 4.77192 4.87303 4.97830 5.06589 5.11987 5.18222 5.20149 5.21724 5.30433 5.34419 5.38511 5.40761 5.47874 5.59442 5.66980 5.72653 5.82272 5.91307 5.96428 5.99811 6.08268 6.10790 6.21754 6.43988 6.66220 6.77201 7.25883 7.39423 7.46204 7.67297 7.81807 8.51515 8.66316 9.01611 9.62089 11.11553 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.002475 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.808331 B =11309.373595 C =12602.005128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.496 6.496 5 C -0.117 4.117 6 H 0.126 0.874 7 C -0.141 4.141 8 C 0.044 3.956 9 O -0.359 6.359 10 C 0.088 3.912 11 H 0.118 0.882 12 C -0.101 4.101 13 C -0.133 4.133 14 C 0.111 3.889 15 N -0.623 5.623 16 C 0.513 3.487 17 O -0.540 6.540 18 C -0.121 4.121 19 C 0.001 3.999 20 C -0.524 4.524 21 H 0.072 0.928 22 C 0.069 3.931 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.261 1.261 28 C 0.111 3.889 29 C -0.121 4.121 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.019 0.981 46 H 0.263 0.737 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -18.887 -27.086 33.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.136 4.136 6 H 0.144 0.856 7 C -0.179 4.179 8 C -0.033 4.033 9 O -0.277 6.277 10 C 0.030 3.970 11 H 0.136 0.864 12 C -0.120 4.120 13 C -0.172 4.172 14 C -0.013 4.013 15 N -0.359 5.359 16 C 0.303 3.697 17 O -0.417 6.417 18 C -0.161 4.161 19 C -0.037 4.037 20 C -0.562 4.562 21 H 0.090 0.910 22 C -0.132 4.132 23 N -0.543 5.543 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.185 1.185 28 C -0.012 4.012 29 C -0.160 4.160 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.110 0.890 49 H 0.099 0.901 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.061 -17.714 -27.074 32.354 hybrid contribution -0.019 0.457 0.116 0.472 sum 0.042 -17.257 -26.958 32.008 Atomic orbital electron populations 1.23335 0.75830 1.03933 1.02884 1.86493 1.23790 1.33054 1.84015 1.23341 0.91545 0.81569 0.72358 1.90702 1.66759 1.36201 1.44560 1.22547 0.88556 1.00022 1.02462 0.85643 1.23132 0.98964 1.00673 0.95102 1.23610 0.95529 0.82807 1.01357 1.88992 1.70484 1.29143 1.39122 1.22937 0.95508 0.93378 0.85131 0.86394 1.21614 0.98022 0.98754 0.93639 1.21999 0.98804 1.02369 0.94001 1.21679 0.95640 0.84893 0.99055 1.48279 1.54897 1.16204 1.16521 1.21534 0.79755 0.83151 0.85220 1.90636 1.46277 1.23789 1.80956 1.21686 0.99701 1.02873 0.91826 1.19376 0.97799 0.92629 0.93854 1.21108 1.33642 1.03151 0.98267 0.90971 1.24969 0.94786 0.98510 0.94972 1.69914 1.42778 1.35605 1.06024 0.86799 0.81107 0.84332 0.77353 1.20234 1.21456 1.18509 1.21504 0.93890 1.02814 0.82958 1.21841 0.99993 0.95576 0.98550 0.87869 0.91503 0.91793 0.88644 0.89980 0.91456 0.88415 0.90550 0.90654 0.91069 0.88684 0.91573 0.89717 0.89697 0.95846 0.96301 0.92741 0.92147 0.89011 0.90098 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.83 10.57 -39.25 -0.41 -3.24 16 3 C 0.47 4.28 7.14 36.00 0.26 4.54 16 4 O -0.50 -6.08 15.01 -18.75 -0.28 -6.36 16 5 C -0.12 -0.80 2.66 -90.24 -0.24 -1.04 16 6 H 0.13 0.64 6.69 -51.93 -0.35 0.29 16 7 C -0.14 -0.71 6.70 -24.72 -0.17 -0.88 16 8 C 0.04 0.25 7.67 38.21 0.29 0.54 16 9 O -0.36 -3.32 10.38 -35.23 -0.37 -3.69 16 10 C 0.09 0.78 2.62 -26.15 -0.07 0.71 16 11 H 0.12 1.33 6.45 -51.93 -0.33 0.99 16 12 C -0.10 -0.87 1.70 -90.58 -0.15 -1.02 16 13 C -0.13 -1.23 5.18 -26.61 -0.14 -1.36 16 14 C 0.11 1.19 6.34 -3.67 -0.02 1.16 16 15 N -0.62 -8.91 2.97 -172.71 -0.51 -9.43 16 16 C 0.51 9.76 7.70 -10.98 -0.08 9.68 16 17 O -0.54 -12.38 15.39 5.56 0.09 -12.29 16 18 C -0.12 -2.41 3.99 -27.88 -0.11 -2.52 16 19 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 20 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 21 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 22 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 24 Si 0.88 22.92 27.47 -169.99 -4.67 18.25 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 28 C 0.11 1.38 6.43 -3.71 -0.02 1.36 16 29 C -0.12 -1.27 5.21 -26.61 -0.14 -1.41 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.51 6.76 -51.93 -0.35 0.16 16 40 H 0.09 1.06 5.94 -51.93 -0.31 0.75 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 43 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 44 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 45 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 49 H 0.08 0.79 7.57 -51.93 -0.39 0.40 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -36.83 393.30 -7.83 -44.66 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -8.32 Total: -3.77 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.05 Total: -2.57 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.26 Total: -36.91 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.98 Total: -25.58 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.67 Total: 18.25 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.83 -7.83 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358620457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.665 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds