Wall clock time and date at job start Tue Mar 31 2020 23:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34229 * 116.99932 * 2 1 4 4 O 1.20829 * 119.99912 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00024 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.43597 * 302.54018 * 5 3 2 7 7 C 1.54811 * 110.48841 * 65.23362 * 5 3 2 8 8 C 1.54998 * 102.09542 * 139.55840 * 7 5 3 9 9 O 1.44381 * 103.48783 * 322.97472 * 8 7 5 10 10 C 1.43753 * 106.97723 * 40.05894 * 9 8 7 11 11 H 1.08999 * 110.00562 * 213.99345 * 10 9 8 12 12 C 1.53002 * 109.87448 * 92.91138 * 10 9 8 13 13 C 1.53039 * 109.45600 * 176.72377 * 12 10 9 14 14 C 1.53200 * 109.33703 * 178.59839 * 13 12 10 15 15 N 1.46990 * 108.73909 * 54.62077 * 14 13 12 16 16 C 1.34773 * 120.61683 * 126.38447 * 15 14 13 17 17 O 1.21277 * 120.00273 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.99828 * 0.02838 * 16 15 14 19 19 C 1.53003 * 109.47089 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46939 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99948 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00009 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00304 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00272 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47139 * 89.99372 * 24 22 20 26 26 H 1.48498 * 109.47365 * 209.99967 * 24 22 20 27 27 H 1.48501 * 109.46397 * 329.99943 * 24 22 20 28 28 C 1.46935 * 118.75619 * 306.41171 * 15 14 13 29 29 C 1.53040 * 109.46189 * 56.65350 * 12 10 9 30 30 H 1.09004 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47439 * 300.00239 * 1 2 3 32 32 H 1.09002 * 109.46534 * 60.00352 * 1 2 3 33 33 H 1.08999 * 110.90394 * 257.75372 * 7 5 3 34 34 H 1.08995 * 110.90510 * 21.31996 * 7 5 3 35 35 H 1.08994 * 110.61650 * 81.47108 * 8 7 5 36 36 H 1.08999 * 110.61693 * 204.47468 * 8 7 5 37 37 H 1.09003 * 109.44674 * 296.68836 * 12 10 9 38 38 H 1.08997 * 109.50038 * 298.56299 * 13 12 10 39 39 H 1.08996 * 109.49937 * 58.63123 * 13 12 10 40 40 H 1.08996 * 109.58343 * 174.44251 * 14 13 12 41 41 H 1.08999 * 109.58296 * 294.86515 * 14 13 12 42 42 H 1.09000 * 109.46711 * 299.99378 * 18 16 15 43 43 H 1.08999 * 109.47308 * 59.99433 * 18 16 15 44 44 H 1.09000 * 109.47127 * 299.99479 * 19 18 16 45 45 H 1.08999 * 109.47218 * 59.99733 * 19 18 16 46 46 H 0.97000 * 120.00114 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.58013 * 293.81744 * 28 15 14 48 48 H 1.09000 * 109.58769 * 173.39580 * 28 15 14 49 49 H 1.08996 * 109.49703 * 301.33977 * 29 12 10 50 50 H 1.08997 * 109.49507 * 61.40349 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9748 0.7464 0.8619 7 6 4.1398 0.6963 -1.3159 8 6 5.2835 1.6918 -1.6371 9 8 4.7454 2.9670 -1.2260 10 6 4.0293 2.7447 0.0005 11 1 3.1643 3.4058 0.0523 12 6 4.9512 2.9999 1.1946 13 6 4.1585 2.8403 2.4939 14 6 5.0920 3.0619 3.6882 15 7 5.7490 4.3682 3.5380 16 6 5.6965 5.2809 4.5283 17 8 6.2423 6.3554 4.3923 18 6 4.9597 4.9662 5.8047 19 6 5.0532 6.1613 6.7554 20 6 4.3159 5.8469 8.0315 21 1 3.8296 4.8901 8.1525 22 6 4.2630 6.7801 9.0450 23 7 3.6191 6.5059 10.1585 24 14 5.1046 8.4347 8.8361 25 1 4.1526 9.4016 8.2326 26 1 5.5459 8.9365 10.1622 27 1 6.2843 8.2811 7.9472 28 6 6.4636 4.6605 2.2878 29 6 5.5143 4.4204 1.1097 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8901 33 1 4.5313 -0.3090 -1.1608 34 1 3.3864 0.7011 -2.1035 35 1 6.1768 1.4488 -1.0618 36 1 5.5021 1.6937 -2.7050 37 1 5.7718 2.2825 1.1794 38 1 3.3527 3.5739 2.5209 39 1 3.7378 1.8360 2.5424 40 1 4.5134 3.0471 4.6118 41 1 5.8455 2.2748 3.7139 42 1 3.9131 4.7620 5.5791 43 1 5.4072 4.0913 6.2763 44 1 6.1000 6.3651 6.9810 45 1 4.6060 7.0365 6.2840 46 1 3.5815 7.1626 10.8714 47 1 7.3290 4.0036 2.1995 48 1 6.7900 5.7004 2.2880 49 1 6.0590 4.5405 0.1732 50 1 4.6958 5.1391 1.1492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358620457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:55 Heat of formation + Delta-G solvation = -202.630874 kcal Electronic energy + Delta-G solvation = -30510.108549 eV Core-core repulsion = 26307.952373 eV Total energy + Delta-G solvation = -4202.156176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15908 -41.19147 -40.26237 -38.22009 -37.58178 -35.60501 -34.46928 -33.72877 -33.27197 -31.95625 -30.06220 -28.84076 -28.14052 -26.35660 -24.42713 -24.01328 -23.17713 -22.75728 -21.43144 -21.11358 -19.99862 -19.21804 -18.76936 -18.02484 -17.87125 -17.61042 -16.95601 -16.74963 -16.66314 -16.51649 -16.25200 -15.67180 -15.20524 -15.09795 -14.85841 -14.67541 -14.65558 -14.37624 -14.24895 -14.01835 -13.78323 -13.48323 -13.36855 -13.22989 -13.00279 -12.94152 -12.92463 -12.40891 -12.30803 -12.22962 -12.01504 -11.98732 -11.89168 -11.86040 -11.78816 -11.66853 -11.50840 -11.38405 -11.31098 -10.79421 -10.69396 -10.54867 -9.62089 -8.32876 -6.35494 1.05522 1.31605 1.33310 1.48812 1.60963 1.65796 2.06193 2.33749 2.82999 3.02706 3.33328 3.48129 3.59174 3.64441 3.80094 3.91347 4.05745 4.09218 4.17525 4.20291 4.27703 4.29754 4.31012 4.34434 4.38677 4.42288 4.47658 4.57201 4.64005 4.69752 4.78894 4.85508 4.87221 4.87582 4.91183 4.95248 5.01583 5.06229 5.09309 5.15341 5.30176 5.31140 5.41555 5.42949 5.59110 5.65677 5.91688 6.22008 6.39906 6.61196 6.70289 7.22867 7.29921 8.82695 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.002475 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.808331 B =11309.373595 C =12602.005128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.468 3.532 4 O -0.537 6.537 5 C -0.113 4.113 6 H 0.154 0.846 7 C -0.133 4.133 8 C 0.037 3.963 9 O -0.385 6.385 10 C 0.092 3.908 11 H 0.084 0.916 12 C -0.093 4.093 13 C -0.129 4.129 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.511 3.489 17 O -0.590 6.590 18 C -0.113 4.113 19 C 0.006 3.994 20 C -0.528 4.528 21 H 0.052 0.948 22 C 0.015 3.985 23 N -0.942 5.942 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.263 1.263 28 C 0.110 3.890 29 C -0.113 4.113 30 H 0.134 0.866 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.010 0.990 45 H 0.004 0.996 46 H 0.268 0.732 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -21.595 -28.652 35.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.132 4.132 6 H 0.171 0.829 7 C -0.171 4.171 8 C -0.038 4.038 9 O -0.304 6.304 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.111 4.111 13 C -0.167 4.167 14 C -0.019 4.019 15 N -0.346 5.346 16 C 0.301 3.699 17 O -0.471 6.471 18 C -0.153 4.153 19 C -0.032 4.032 20 C -0.566 4.566 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.583 5.583 24 Si 0.761 3.239 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.187 1.187 28 C -0.012 4.012 29 C -0.152 4.152 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.028 0.972 45 H 0.022 0.978 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.397 -20.495 -28.677 35.275 hybrid contribution -0.513 1.186 0.522 1.394 sum 0.884 -19.309 -28.155 34.151 Atomic orbital electron populations 1.23560 0.74913 1.05807 1.02358 1.86493 1.24759 1.32333 1.83533 1.23861 0.92520 0.81243 0.71114 1.90697 1.67838 1.37555 1.46579 1.22630 0.86918 0.98963 1.04685 0.82901 1.23162 0.98413 1.01935 0.93591 1.23879 0.96169 0.81362 1.02431 1.88971 1.70782 1.31428 1.39208 1.22716 0.94500 0.94151 0.85264 0.89836 1.21564 0.98617 0.97823 0.93106 1.21966 0.97818 1.03227 0.93661 1.22027 0.96677 0.83626 0.99602 1.48288 1.53925 1.16525 1.15828 1.21254 0.79507 0.83245 0.85878 1.90615 1.48583 1.25893 1.81959 1.21499 1.01041 1.01037 0.91727 1.19220 0.96018 0.94493 0.93491 1.21406 1.33240 1.02293 0.99617 0.92974 1.25773 0.95579 1.02094 0.94824 1.70016 1.44274 1.37049 1.06930 0.85862 0.80029 0.80306 0.77726 1.19579 1.20086 1.18706 1.21654 0.95064 1.02028 0.82469 1.21749 0.98805 0.96556 0.98050 0.84787 0.92278 0.92180 0.85647 0.90892 0.89469 0.87382 0.87499 0.93284 0.88212 0.89083 0.88076 0.88507 0.87790 0.97193 0.97764 0.92339 0.89142 0.91753 0.89084 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -4.97 10.57 -51.40 -0.54 -5.51 16 3 C 0.47 7.98 7.14 71.23 0.51 8.48 16 4 O -0.54 -13.44 15.01 21.95 0.33 -13.11 16 5 C -0.11 -1.24 2.66 -10.55 -0.03 -1.26 16 6 H 0.15 0.82 6.69 -2.39 -0.02 0.81 16 7 C -0.13 -0.89 6.70 31.90 0.21 -0.68 16 8 C 0.04 0.30 7.67 72.67 0.56 0.86 16 9 O -0.38 -6.47 10.38 -148.98 -1.55 -8.01 16 10 C 0.09 1.48 2.62 30.97 0.08 1.56 16 11 H 0.08 1.95 6.45 -2.39 -0.02 1.93 16 12 C -0.09 -1.34 1.70 -10.77 -0.02 -1.35 16 13 C -0.13 -2.05 5.18 30.67 0.16 -1.89 16 14 C 0.10 1.89 6.34 86.35 0.55 2.44 16 15 N -0.61 -16.64 2.97 -818.71 -2.43 -19.07 16 16 C 0.51 19.37 7.70 87.66 0.67 20.04 16 17 O -0.59 -27.58 15.39 -3.02 -0.05 -27.62 16 18 C -0.11 -4.48 3.99 29.85 0.12 -4.36 16 19 C 0.01 0.30 3.33 29.85 0.10 0.40 16 20 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 21 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 22 C 0.02 0.91 5.47 84.65 0.46 1.37 16 23 N -0.94 -59.54 13.96 21.45 0.30 -59.25 16 24 Si 0.94 47.78 27.47 68.60 1.88 49.66 16 25 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.26 -13.40 6.54 99.48 0.65 -12.75 16 28 C 0.11 2.57 6.43 86.36 0.56 3.13 16 29 C -0.11 -2.26 5.21 30.67 0.16 -2.10 16 30 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 32 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 33 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.07 0.64 7.86 -2.39 -0.02 0.62 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.06 6.76 -2.39 -0.02 1.05 16 40 H 0.09 1.80 5.94 -2.39 -0.01 1.78 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 3.56 7.69 -2.39 -0.02 3.54 16 43 H 0.10 3.68 7.94 -2.39 -0.02 3.66 16 44 H 0.01 0.52 7.16 -2.39 -0.02 0.51 16 45 H 0.00 0.21 7.53 -2.39 -0.02 0.20 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.06 1.89 7.00 -2.39 -0.02 1.88 16 49 H 0.09 1.65 7.57 -2.39 -0.02 1.63 16 50 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -83.41 393.30 4.35 -79.06 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.87 Total: 6.45 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.54 Total: -2.60 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.14 Total: -78.32 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -1.81 Total: -54.25 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.88 Total: 49.66 kcal Total: -83.41 4.35 -79.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358620457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.566 kcal (2) G-P(sol) polarization free energy of solvation -83.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds