Wall clock time and date at job start Tue Mar 31 2020 23:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99964 * 2 1 4 4 C 1.46896 * 110.99957 * 123.95887 * 2 1 3 5 5 C 1.53003 * 109.46942 * 170.00243 * 4 2 1 6 6 N 1.46497 * 109.46983 * 185.38865 * 5 4 2 7 7 C 1.46505 * 119.99797 * 276.19124 * 6 5 4 8 8 C 1.50695 * 109.47592 * 265.55112 * 7 6 5 9 9 C 1.33388 * 125.20004 * 94.77087 * 8 7 6 10 10 C 1.38421 * 114.92120 * 179.97438 * 9 8 7 11 11 C 1.33394 * 114.91962 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20381 * 274.47068 * 8 7 6 13 13 C 1.34773 * 120.00312 * 96.20078 * 6 5 4 14 14 O 1.21284 * 120.00157 * 185.38912 * 13 6 5 15 15 C 1.50700 * 120.00132 * 5.38048 * 13 6 5 16 16 H 1.09007 * 109.46521 * 30.30868 * 15 13 6 17 17 N 1.46902 * 109.47212 * 150.30459 * 15 13 6 18 18 C 1.53000 * 109.47570 * 270.31092 * 15 13 6 19 19 C 1.53002 * 109.46984 * 175.61785 * 18 15 13 20 20 C 1.50709 * 109.46859 * 179.97438 * 19 18 15 21 21 H 1.07999 * 119.99874 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99908 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99951 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00011 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47038 * 90.00291 * 24 22 20 26 26 H 1.48500 * 109.47275 * 210.00203 * 24 22 20 27 27 H 1.48499 * 109.47372 * 330.00314 * 24 22 20 28 28 H 1.09003 * 109.47549 * 296.04167 * 1 2 3 29 29 H 1.09003 * 109.47750 * 56.04173 * 1 2 3 30 30 H 1.08998 * 109.47048 * 176.03961 * 1 2 3 31 31 H 1.08999 * 109.47053 * 183.95413 * 3 2 1 32 32 H 1.08992 * 109.47230 * 303.95964 * 3 2 1 33 33 H 1.09005 * 109.46369 * 63.95737 * 3 2 1 34 34 H 1.08992 * 109.47272 * 50.00188 * 4 2 1 35 35 H 1.08998 * 109.46958 * 289.99966 * 4 2 1 36 36 H 1.09000 * 109.47299 * 65.38290 * 5 4 2 37 37 H 1.09004 * 109.46972 * 305.38517 * 5 4 2 38 38 H 1.09003 * 109.46983 * 25.55632 * 7 6 5 39 39 H 1.09006 * 109.46691 * 145.54975 * 7 6 5 40 40 H 1.08001 * 122.54542 * 359.96053 * 9 8 7 41 41 H 1.08002 * 122.54155 * 180.02562 * 10 9 8 42 42 H 1.08003 * 125.20242 * 180.02562 * 11 10 9 43 43 H 1.00899 * 110.99507 * 60.00691 * 17 15 13 44 44 H 1.00900 * 111.00070 * 183.95634 * 17 15 13 45 45 H 1.08994 * 109.46735 * 295.61869 * 18 15 13 46 46 H 1.09000 * 109.46802 * 55.61909 * 18 15 13 47 47 H 1.09003 * 109.47198 * 299.99662 * 19 18 15 48 48 H 1.08994 * 109.47249 * 59.99914 * 19 18 15 49 49 H 0.96996 * 120.00033 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9553 0.9702 6 7 4.0082 -1.8267 2.0347 7 6 4.3408 -1.2640 3.3459 8 6 5.8112 -0.9377 3.3942 9 6 6.3429 0.2565 3.1288 10 6 7.7213 0.3188 3.2387 11 6 8.3091 -0.8251 3.5929 12 16 7.0881 -2.0712 3.8164 13 6 4.1659 -3.1458 1.8078 14 8 4.4890 -3.8828 2.7152 15 6 3.9405 -3.7050 0.4267 16 1 4.1895 -2.9479 -0.3169 17 7 4.7948 -4.8838 0.2303 18 6 2.4724 -4.1077 0.2727 19 6 2.2191 -4.5732 -1.1626 20 6 0.7733 -4.9704 -1.3140 21 1 0.1021 -4.8976 -0.4710 22 6 0.3073 -5.4266 -2.5288 23 7 -0.9543 -5.7737 -2.6609 24 14 1.4680 -5.5517 -3.9871 25 1 2.0977 -6.8965 -4.0045 26 1 0.7064 -5.3454 -5.2451 27 1 2.5226 -4.5128 -3.8709 28 1 -0.3634 0.4512 0.9233 29 1 -0.3635 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.5090 -1.7407 1.1754 35 1 1.7974 -0.2249 2.0627 36 1 4.0008 0.0134 1.0281 37 1 3.7082 -1.4107 0.0010 38 1 3.7614 -0.3553 3.5089 39 1 4.1041 -1.9903 4.1235 40 1 5.7434 1.1102 2.8491 41 1 8.2787 1.2248 3.0519 42 1 9.3718 -0.9636 3.7270 43 1 4.5831 -5.6007 0.9081 44 1 4.7100 -5.2392 -0.7102 45 1 2.2440 -4.9192 0.9636 46 1 1.8357 -3.2513 0.4947 47 1 2.4476 -3.7616 -1.8534 48 1 2.8560 -5.4294 -1.3846 49 1 -1.2822 -6.0943 -3.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424169125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:09 Heat of formation + Delta-G solvation = 9.491210 kcal Electronic energy + Delta-G solvation = -28388.997295 eV Core-core repulsion = 24671.085044 eV Total energy + Delta-G solvation = -3717.912250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21177 -37.95804 -37.61890 -35.77017 -35.30671 -32.78492 -31.36756 -30.29056 -29.13321 -27.61802 -27.36800 -25.96857 -24.34754 -23.74868 -22.64788 -21.30760 -20.36182 -19.47446 -18.72708 -17.53942 -17.28435 -16.71568 -16.56079 -15.63179 -15.39850 -15.25636 -14.96116 -14.50113 -14.33848 -14.17659 -14.08203 -13.56659 -13.34834 -13.19547 -12.97440 -12.81183 -12.70994 -12.64174 -12.50655 -12.44423 -12.04099 -11.86313 -11.73091 -11.62515 -11.53535 -11.21128 -11.13659 -10.83803 -10.69971 -10.22400 -10.00828 -9.80212 -9.46133 -9.26843 -8.89992 -8.75017 -8.57559 -8.51112 -8.36212 -8.28156 -6.07748 -4.06351 0.84431 1.58944 1.99586 2.51701 2.80961 3.05416 3.28587 3.36790 3.39209 3.99025 4.42020 4.55584 4.68415 4.81759 4.92229 4.93487 5.06707 5.09687 5.12362 5.25962 5.27221 5.30815 5.35108 5.40308 5.43881 5.51621 5.52192 5.60525 5.65448 5.73846 5.76651 5.92426 5.95015 6.09512 6.13995 6.25795 6.32171 6.37993 6.46547 6.73129 6.94902 6.99158 7.15577 7.27127 7.30379 7.49728 7.71106 7.80563 8.31562 8.48782 8.96029 9.54268 11.05546 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003560 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.746006 B = 7862.246119 C = 9372.848232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.020 3.980 4 C 0.034 3.966 5 C 0.110 3.890 6 N -0.611 5.611 7 C 0.186 3.814 8 C -0.195 4.195 9 C -0.132 4.132 10 C -0.140 4.140 11 C -0.227 4.227 12 S 0.146 5.854 13 C 0.532 3.468 14 O -0.529 6.529 15 C 0.071 3.929 16 H 0.097 0.903 17 N -0.831 5.831 18 C -0.131 4.131 19 C -0.008 4.008 20 C -0.518 4.518 21 H 0.070 0.930 22 C 0.068 3.932 23 N -0.902 5.902 24 Si 0.879 3.121 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.090 0.910 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.160 0.840 43 H 0.348 0.652 44 H 0.351 0.649 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.020 0.980 48 H 0.009 0.991 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.004 16.256 10.728 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.128 4.128 4 C -0.095 4.095 5 C -0.014 4.014 6 N -0.345 5.345 7 C 0.062 3.938 8 C -0.315 4.315 9 C -0.164 4.164 10 C -0.171 4.171 11 C -0.363 4.363 12 S 0.411 5.589 13 C 0.320 3.680 14 O -0.404 6.404 15 C -0.044 4.044 16 H 0.115 0.885 17 N -0.364 5.364 18 C -0.170 4.170 19 C -0.046 4.046 20 C -0.556 4.556 21 H 0.088 0.912 22 C -0.133 4.133 23 N -0.541 5.541 24 Si 0.706 3.294 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.178 0.822 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.038 0.962 48 H 0.027 0.973 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.860 14.488 11.232 22.982 hybrid contribution -0.728 1.469 -0.804 1.826 sum 13.132 15.957 10.428 23.148 Atomic orbital electron populations 1.22406 0.86340 1.03525 0.99975 1.61838 1.08603 1.13263 1.42517 1.22471 1.00780 0.89205 1.00344 1.22686 0.95730 0.99749 0.91374 1.21668 0.93233 0.94904 0.91592 1.47959 1.65773 1.07845 1.12901 1.19743 0.87904 0.99803 0.86397 1.24971 1.00169 0.97212 1.09113 1.20073 0.94838 0.97553 1.03969 1.20099 0.94296 0.98804 1.03915 1.25809 1.03521 0.97411 1.09604 1.84838 0.95725 1.12682 1.65669 1.20869 0.75014 0.80971 0.91108 1.90632 1.46353 1.57715 1.45681 1.21599 0.94521 0.95099 0.93157 0.88492 1.58785 1.57735 1.10190 1.09659 1.22273 0.92357 1.01449 1.00920 1.19546 0.97884 0.95755 0.91366 1.21022 0.93262 1.43458 0.97837 0.91201 1.25010 0.94942 0.94683 0.98686 1.69908 1.14342 1.44606 1.25254 0.86796 0.81408 0.78915 0.82281 1.20345 1.21405 1.18863 0.96043 0.91240 0.90186 0.91372 0.91329 0.95951 0.89173 0.94866 0.90731 0.88285 0.88902 0.88922 0.84688 0.84694 0.82234 0.83868 0.83464 0.92223 0.91481 0.96183 0.97283 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.57 60.06 0.57 0.88 16 2 N -0.54 -6.53 5.02 -251.26 -1.26 -7.79 16 3 C 0.02 0.19 9.32 60.07 0.56 0.75 16 4 C 0.03 0.40 5.14 -3.82 -0.02 0.38 16 5 C 0.11 1.24 5.11 -4.04 -0.02 1.22 16 6 N -0.61 -7.81 2.47 -175.05 -0.43 -8.24 16 7 C 0.19 2.08 5.92 -5.19 -0.03 2.05 16 8 C -0.20 -2.23 6.06 -36.01 -0.22 -2.45 16 9 C -0.13 -1.31 10.05 -41.21 -0.41 -1.72 16 10 C -0.14 -1.33 10.18 -41.21 -0.42 -1.75 16 11 C -0.23 -2.28 11.23 29.04 0.33 -1.96 16 12 S 0.15 1.78 23.33 -107.50 -2.51 -0.72 16 13 C 0.53 8.48 6.81 -10.99 -0.07 8.40 16 14 O -0.53 -9.68 15.97 5.55 0.09 -9.59 16 15 C 0.07 1.16 2.52 -68.86 -0.17 0.99 16 16 H 0.10 1.53 5.97 -51.93 -0.31 1.21 16 17 N -0.83 -13.58 9.02 -5.65 -0.05 -13.63 16 18 C -0.13 -2.47 4.78 -26.73 -0.13 -2.60 16 19 C -0.01 -0.18 3.80 -27.88 -0.11 -0.29 16 20 C -0.52 -14.24 9.66 -34.44 -0.33 -14.57 16 21 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 22 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 23 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 24 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 31 H 0.07 0.57 6.59 -51.93 -0.34 0.23 16 32 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 1.29 5.49 -51.93 -0.28 1.00 16 35 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 36 H 0.07 0.70 6.79 -51.93 -0.35 0.35 16 37 H 0.10 1.26 5.52 -51.93 -0.29 0.97 16 38 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 39 H 0.09 1.15 7.49 -51.93 -0.39 0.76 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.35 5.79 8.55 -39.29 -0.34 5.45 16 44 H 0.35 5.56 7.53 -39.29 -0.30 5.26 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.07 1.25 5.33 -51.93 -0.28 0.97 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 48 H 0.01 0.20 6.28 -51.93 -0.33 -0.13 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -31.94 401.75 -10.38 -42.32 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.80 Total: 10.43 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.57 Total: -8.82 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.97 Total: -56.21 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.51 Total: -0.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.94 -10.38 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424169125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.806 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds