Wall clock time and date at job start Tue Mar 31 2020 23:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99964 * 2 1 4 4 C 1.46896 * 110.99957 * 123.95887 * 2 1 3 5 5 C 1.53003 * 109.46942 * 170.00243 * 4 2 1 6 6 N 1.46497 * 109.46983 * 185.38865 * 5 4 2 7 7 C 1.46505 * 119.99797 * 276.19124 * 6 5 4 8 8 C 1.50695 * 109.47592 * 265.55112 * 7 6 5 9 9 C 1.33388 * 125.20004 * 94.77087 * 8 7 6 10 10 C 1.38421 * 114.92120 * 179.97438 * 9 8 7 11 11 C 1.33394 * 114.91962 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20381 * 274.47068 * 8 7 6 13 13 C 1.34773 * 120.00312 * 96.20078 * 6 5 4 14 14 O 1.21284 * 120.00157 * 185.38912 * 13 6 5 15 15 C 1.50700 * 120.00132 * 5.38048 * 13 6 5 16 16 H 1.09007 * 109.46521 * 30.30868 * 15 13 6 17 17 N 1.46902 * 109.47212 * 150.30459 * 15 13 6 18 18 C 1.53000 * 109.47570 * 270.31092 * 15 13 6 19 19 C 1.53002 * 109.46984 * 175.61785 * 18 15 13 20 20 C 1.50709 * 109.46859 * 179.97438 * 19 18 15 21 21 H 1.07999 * 119.99874 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99908 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99951 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00011 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47038 * 90.00291 * 24 22 20 26 26 H 1.48500 * 109.47275 * 210.00203 * 24 22 20 27 27 H 1.48499 * 109.47372 * 330.00314 * 24 22 20 28 28 H 1.09003 * 109.47549 * 296.04167 * 1 2 3 29 29 H 1.09003 * 109.47750 * 56.04173 * 1 2 3 30 30 H 1.08998 * 109.47048 * 176.03961 * 1 2 3 31 31 H 1.08999 * 109.47053 * 183.95413 * 3 2 1 32 32 H 1.08992 * 109.47230 * 303.95964 * 3 2 1 33 33 H 1.09005 * 109.46369 * 63.95737 * 3 2 1 34 34 H 1.08992 * 109.47272 * 50.00188 * 4 2 1 35 35 H 1.08998 * 109.46958 * 289.99966 * 4 2 1 36 36 H 1.09000 * 109.47299 * 65.38290 * 5 4 2 37 37 H 1.09004 * 109.46972 * 305.38517 * 5 4 2 38 38 H 1.09003 * 109.46983 * 25.55632 * 7 6 5 39 39 H 1.09006 * 109.46691 * 145.54975 * 7 6 5 40 40 H 1.08001 * 122.54542 * 359.96053 * 9 8 7 41 41 H 1.08002 * 122.54155 * 180.02562 * 10 9 8 42 42 H 1.08003 * 125.20242 * 180.02562 * 11 10 9 43 43 H 1.00899 * 110.99507 * 60.00691 * 17 15 13 44 44 H 1.00900 * 111.00070 * 183.95634 * 17 15 13 45 45 H 1.08994 * 109.46735 * 295.61869 * 18 15 13 46 46 H 1.09000 * 109.46802 * 55.61909 * 18 15 13 47 47 H 1.09003 * 109.47198 * 299.99662 * 19 18 15 48 48 H 1.08994 * 109.47249 * 59.99914 * 19 18 15 49 49 H 0.96996 * 120.00033 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9553 0.9702 6 7 4.0082 -1.8267 2.0347 7 6 4.3408 -1.2640 3.3459 8 6 5.8112 -0.9377 3.3942 9 6 6.3429 0.2565 3.1288 10 6 7.7213 0.3188 3.2387 11 6 8.3091 -0.8251 3.5929 12 16 7.0881 -2.0712 3.8164 13 6 4.1659 -3.1458 1.8078 14 8 4.4890 -3.8828 2.7152 15 6 3.9405 -3.7050 0.4267 16 1 4.1895 -2.9479 -0.3169 17 7 4.7948 -4.8838 0.2303 18 6 2.4724 -4.1077 0.2727 19 6 2.2191 -4.5732 -1.1626 20 6 0.7733 -4.9704 -1.3140 21 1 0.1021 -4.8976 -0.4710 22 6 0.3073 -5.4266 -2.5288 23 7 -0.9543 -5.7737 -2.6609 24 14 1.4680 -5.5517 -3.9871 25 1 2.0977 -6.8965 -4.0045 26 1 0.7064 -5.3454 -5.2451 27 1 2.5226 -4.5128 -3.8709 28 1 -0.3634 0.4512 0.9233 29 1 -0.3635 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.5090 -1.7407 1.1754 35 1 1.7974 -0.2249 2.0627 36 1 4.0008 0.0134 1.0281 37 1 3.7082 -1.4107 0.0010 38 1 3.7614 -0.3553 3.5089 39 1 4.1041 -1.9903 4.1235 40 1 5.7434 1.1102 2.8491 41 1 8.2787 1.2248 3.0519 42 1 9.3718 -0.9636 3.7270 43 1 4.5831 -5.6007 0.9081 44 1 4.7100 -5.2392 -0.7102 45 1 2.2440 -4.9192 0.9636 46 1 1.8357 -3.2513 0.4947 47 1 2.4476 -3.7616 -1.8534 48 1 2.8560 -5.4294 -1.3846 49 1 -1.2822 -6.0943 -3.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424169125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:08 Heat of formation + Delta-G solvation = -12.918619 kcal Electronic energy + Delta-G solvation = -28389.969058 eV Core-core repulsion = 24671.085044 eV Total energy + Delta-G solvation = -3718.884013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37497 -38.82587 -38.52183 -37.19876 -36.40848 -34.80656 -32.25689 -32.07300 -30.09832 -28.72516 -28.38822 -27.19804 -25.53261 -24.87548 -23.75827 -22.27067 -22.01295 -20.32022 -19.87289 -18.97658 -18.53216 -18.14360 -17.59664 -16.60860 -16.33982 -16.28606 -16.15796 -15.99246 -15.64484 -15.59049 -15.22416 -14.88896 -14.59831 -14.35290 -14.20180 -13.97252 -13.85579 -13.57334 -13.52200 -13.38188 -13.29931 -13.06413 -12.85675 -12.68279 -12.54633 -12.48445 -12.34309 -12.18226 -11.95665 -11.77547 -11.49936 -11.48588 -11.38227 -10.77604 -10.73821 -9.92207 -9.67546 -9.57965 -9.37945 -9.23656 -8.27412 -6.31700 0.06053 0.78244 1.22347 1.38629 1.40385 1.51796 1.56057 1.71212 2.11246 2.37903 3.05934 3.08568 3.52799 3.71222 3.81169 3.86457 4.03942 4.09612 4.16396 4.19410 4.26553 4.31219 4.40577 4.49256 4.53044 4.58863 4.67813 4.71449 4.72144 4.75314 4.78427 4.84915 4.91831 5.02784 5.08712 5.12726 5.21156 5.38617 5.40368 5.47648 5.49106 5.64376 5.64881 5.99981 6.06182 6.14776 6.27465 6.32252 6.47136 6.75249 7.11979 7.32583 8.89389 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011818 B = 0.003560 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.746006 B = 7862.246119 C = 9372.848232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.557 5.557 3 C 0.021 3.979 4 C 0.040 3.960 5 C 0.113 3.887 6 N -0.601 5.601 7 C 0.186 3.814 8 C -0.207 4.207 9 C -0.120 4.120 10 C -0.142 4.142 11 C -0.220 4.220 12 S 0.071 5.929 13 C 0.528 3.472 14 O -0.558 6.558 15 C 0.080 3.920 16 H 0.111 0.889 17 N -0.830 5.830 18 C -0.118 4.118 19 C 0.000 4.000 20 C -0.526 4.526 21 H 0.025 0.975 22 C 0.006 3.994 23 N -0.952 5.952 24 Si 0.949 3.051 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.239 1.239 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.074 0.926 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.179 0.821 43 H 0.345 0.655 44 H 0.354 0.646 45 H 0.038 0.962 46 H 0.066 0.934 47 H 0.028 0.972 48 H 0.020 0.980 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.554 19.397 9.917 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.282 5.282 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.010 4.010 6 N -0.334 5.334 7 C 0.062 3.938 8 C -0.326 4.326 9 C -0.152 4.152 10 C -0.172 4.172 11 C -0.356 4.356 12 S 0.335 5.665 13 C 0.317 3.683 14 O -0.436 6.436 15 C -0.035 4.035 16 H 0.129 0.871 17 N -0.362 5.362 18 C -0.157 4.157 19 C -0.038 4.038 20 C -0.564 4.564 21 H 0.044 0.956 22 C -0.191 4.191 23 N -0.593 5.593 24 Si 0.772 3.228 25 H -0.194 1.194 26 H -0.213 1.213 27 H -0.162 1.162 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.092 0.908 40 H 0.182 0.818 41 H 0.182 0.818 42 H 0.196 0.804 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.046 0.954 48 H 0.038 0.962 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.424 17.673 10.434 26.286 hybrid contribution -1.581 0.578 -0.468 1.747 sum 14.843 18.251 9.966 25.549 Atomic orbital electron populations 1.22319 0.86918 1.01669 1.01064 1.61817 1.08346 1.15275 1.42759 1.22537 1.01529 0.87429 1.01204 1.22550 0.95712 0.98424 0.92225 1.21739 0.92984 0.95799 0.90462 1.47940 1.64529 1.06931 1.13977 1.19873 0.88674 1.00447 0.84776 1.24912 0.99476 0.97310 1.10892 1.20443 0.95330 0.97529 1.01861 1.20486 0.94432 0.99472 1.02853 1.26044 1.03842 0.96507 1.09236 1.85128 0.98449 1.15490 1.67478 1.20746 0.75114 0.82078 0.90392 1.90625 1.47928 1.58760 1.46254 1.21492 0.92230 0.95476 0.94322 0.87124 1.58803 1.57390 1.10180 1.09781 1.22068 0.94732 1.00667 0.98278 1.19434 0.94560 0.96214 0.93589 1.21345 0.95355 1.43127 0.96565 0.95617 1.25992 0.96660 0.94282 1.02145 1.70073 1.16744 1.46209 1.26258 0.85677 0.79468 0.79902 0.77736 1.19377 1.21311 1.16246 0.94705 0.90415 0.93486 0.89930 0.90922 0.94692 0.92459 0.93254 0.87520 0.89425 0.85613 0.90806 0.81806 0.81849 0.80377 0.84188 0.83105 0.94336 0.91512 0.95384 0.96211 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.57 127.69 1.22 1.90 16 2 N -0.56 -12.56 5.02 -948.86 -4.76 -17.32 16 3 C 0.02 0.31 9.32 127.69 1.19 1.50 16 4 C 0.04 0.89 5.14 86.31 0.44 1.33 16 5 C 0.11 2.27 5.11 86.38 0.44 2.71 16 6 N -0.60 -14.45 2.47 -826.14 -2.04 -16.49 16 7 C 0.19 3.83 5.92 85.63 0.51 4.34 16 8 C -0.21 -4.29 6.06 24.59 0.15 -4.14 16 9 C -0.12 -1.89 10.05 21.22 0.21 -1.68 16 10 C -0.14 -2.16 10.18 21.22 0.22 -1.95 16 11 C -0.22 -3.93 11.23 66.72 0.75 -3.18 16 12 S 0.07 1.70 23.33 -56.49 -1.32 0.38 16 13 C 0.53 16.69 6.81 87.66 0.60 17.29 16 14 O -0.56 -20.81 15.97 -3.04 -0.05 -20.85 16 15 C 0.08 2.56 2.52 44.17 0.11 2.67 16 16 H 0.11 3.28 5.97 -2.38 -0.01 3.26 16 17 N -0.83 -26.55 9.02 -171.79 -1.55 -28.10 16 18 C -0.12 -4.54 4.78 30.59 0.15 -4.39 16 19 C 0.00 -0.02 3.80 29.85 0.11 0.09 16 20 C -0.53 -29.83 9.66 25.60 0.25 -29.59 16 21 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 22 C 0.01 0.34 5.47 84.65 0.46 0.80 16 23 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 24 Si 0.95 43.33 27.47 68.60 1.88 45.22 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 30 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.08 1.01 6.59 -2.39 -0.02 0.99 16 32 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 33 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.06 1.66 5.49 -2.39 -0.01 1.65 16 35 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.11 1.50 6.79 -2.39 -0.02 1.49 16 37 H 0.09 2.01 5.52 -2.38 -0.01 2.00 16 38 H 0.13 1.72 8.03 -2.39 -0.02 1.70 16 39 H 0.07 1.82 7.49 -2.38 -0.02 1.80 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.34 11.54 8.55 -89.69 -0.77 10.77 16 44 H 0.35 10.73 7.53 -89.69 -0.68 10.05 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 2.57 5.33 -2.39 -0.01 2.56 16 47 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 48 H 0.02 0.84 6.28 -2.39 -0.02 0.83 16 49 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.30 401.75 -1.26 -73.56 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.53 Total: 35.09 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 6.81 Total: -12.30 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -8.05 Total: -121.10 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.32 Total: 0.38 kcal Total: -72.30 -1.26 -73.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424169125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.642 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds