Wall clock time and date at job start Tue Mar 31 2020 23:18:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46904 * 110.99494 * 2 1
4 4 C 1.46888 * 111.00297 * 123.95776 * 2 1 3
5 5 C 1.53005 * 109.47119 * 170.00085 * 4 2 1
6 6 N 1.46507 * 109.46969 * 180.02562 * 5 4 2
7 7 C 1.46500 * 120.00007 * 90.00298 * 6 5 4
8 8 C 1.50702 * 109.46801 * 269.99555 * 7 6 5
9 9 C 1.33381 * 125.20534 * 90.00074 * 8 7 6
10 10 C 1.38427 * 114.92374 * 180.02562 * 9 8 7
11 11 C 1.33387 * 114.91991 * 0.25034 * 10 9 8
12 12 S 1.75886 * 109.59194 * 359.63459 * 11 10 9
13 13 C 1.34779 * 119.99619 * 269.99615 * 6 5 4
14 14 O 1.21282 * 120.00234 * 0.02562 * 13 6 5
15 15 C 1.50702 * 119.99578 * 180.02562 * 13 6 5
16 16 H 1.08988 * 109.47548 * 320.00180 * 15 13 6
17 17 N 1.46905 * 109.46781 * 199.99772 * 15 13 6
18 18 C 1.53005 * 109.46724 * 80.00468 * 15 13 6
19 19 C 1.53000 * 109.46644 * 184.99520 * 18 15 13
20 20 C 1.50702 * 109.46954 * 179.97438 * 19 18 15
21 21 H 1.07991 * 120.00105 * 0.02562 * 20 19 18
22 22 C 1.37878 * 119.99944 * 180.02562 * 20 19 18
23 23 N 1.31516 * 120.00020 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 119.99967 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47087 * 359.97438 * 24 22 20
26 26 H 1.48497 * 109.47271 * 119.99957 * 24 22 20
27 27 H 1.48504 * 109.46729 * 239.99675 * 24 22 20
28 28 H 1.09001 * 109.46505 * 296.03952 * 1 2 3
29 29 H 1.08997 * 109.47479 * 56.04232 * 1 2 3
30 30 H 1.09004 * 109.46502 * 176.04676 * 1 2 3
31 31 H 1.09005 * 109.46878 * 183.95736 * 3 2 1
32 32 H 1.08994 * 109.47356 * 303.95599 * 3 2 1
33 33 H 1.09003 * 109.46932 * 63.96294 * 3 2 1
34 34 H 1.09000 * 109.47168 * 50.00055 * 4 2 1
35 35 H 1.08998 * 109.47790 * 289.99733 * 4 2 1
36 36 H 1.09000 * 109.47125 * 59.99943 * 5 4 2
37 37 H 1.08995 * 109.47037 * 299.99679 * 5 4 2
38 38 H 1.09000 * 109.46999 * 149.99795 * 7 6 5
39 39 H 1.08995 * 109.47363 * 29.99713 * 7 6 5
40 40 H 1.08001 * 122.53741 * 0.05729 * 9 8 7
41 41 H 1.08002 * 122.53759 * 179.97438 * 10 9 8
42 42 H 1.08002 * 125.20431 * 179.75072 * 11 10 9
43 43 H 1.00897 * 110.99608 * 176.05021 * 17 15 13
44 44 H 1.00900 * 111.00080 * 300.00290 * 17 15 13
45 45 H 1.08999 * 109.47004 * 304.99604 * 18 15 13
46 46 H 1.08997 * 109.47221 * 65.00086 * 18 15 13
47 47 H 1.08999 * 109.47489 * 299.99787 * 19 18 15
48 48 H 1.09002 * 109.47155 * 59.99973 * 19 18 15
49 49 H 0.97003 * 119.99763 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9955 -0.7660 1.1374
5 6 3.5046 -0.9553 0.9701
6 7 4.0295 -1.7198 2.1043
7 6 4.0864 -3.1822 2.0384
8 6 2.7996 -3.7593 2.5695
9 6 1.7164 -4.0252 1.8380
10 6 0.6499 -4.5528 2.5455
11 6 0.8652 -4.7104 3.8524
12 16 2.4960 -4.1845 4.2490
13 6 4.4603 -1.0776 3.2082
14 8 4.4129 0.1330 3.2628
15 6 5.0008 -1.8640 4.3746
16 1 4.3965 -2.7592 4.5206
17 7 4.9518 -1.0368 5.5876
18 6 6.4492 -2.2671 4.0904
19 6 6.9576 -3.1695 5.2166
20 6 8.3840 -3.5671 4.9364
21 1 8.8785 -3.2114 4.0447
22 6 9.0577 -4.3849 5.8187
23 7 8.4556 -4.8176 6.9049
24 14 10.8259 -4.8772 5.4718
25 1 11.2696 -4.2622 4.1950
26 1 11.6971 -4.4056 6.5780
27 1 10.9165 -6.3557 5.3663
28 1 -0.3632 0.4512 0.9234
29 1 -0.3634 0.5740 -0.8524
30 1 -0.3632 -1.0253 -0.0709
31 1 3.0828 1.3434 -0.0709
32 1 1.5897 1.9164 -0.8524
33 1 1.7044 1.8723 0.9234
34 1 1.5091 -1.7407 1.1754
35 1 1.7977 -0.2249 2.0627
36 1 3.9910 0.0194 0.9321
37 1 3.7025 -1.4964 0.0449
38 1 4.9213 -3.5408 2.6405
39 1 4.2246 -3.4942 1.0032
40 1 1.6748 -3.8432 0.7743
41 1 -0.2872 -4.8127 2.0756
42 1 0.1485 -5.1028 4.5586
43 1 5.2487 -1.5625 6.3960
44 1 5.5049 -0.2001 5.4773
45 1 6.4975 -2.8052 3.1437
46 1 7.0704 -1.3734 4.0325
47 1 6.9093 -2.6314 6.1632
48 1 6.3364 -4.0632 5.2745
49 1 8.9295 -5.3934 7.5254
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424169130.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:18:12
Heat of formation + Delta-G solvation = 2.346567 kcal
Electronic energy + Delta-G solvation = -28362.332073 eV
Core-core repulsion = 24644.110008 eV
Total energy + Delta-G solvation = -3718.222065 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.19387 -37.99556 -37.56457 -35.59154 -35.47032 -32.88270 -31.08254 -29.95517
-29.55158 -27.76233 -26.66735 -26.07119 -24.69058 -23.37367 -22.92137 -21.30547
-20.43690 -19.45815 -18.97920 -17.50818 -17.28124 -16.36071 -16.10911 -15.74068
-15.47872 -15.25590 -14.99651 -14.58280 -14.44676 -14.26627 -13.95584 -13.40970
-13.36287 -13.23560 -13.05827 -12.85328 -12.68146 -12.56778 -12.48726 -12.15624
-12.01017 -11.92665 -11.84521 -11.69370 -11.49026 -11.10838 -10.97565 -10.87898
-10.68830 -10.55123 -9.99427 -9.92937 -9.28901 -9.21209 -8.92131 -8.68168
-8.53799 -8.45844 -8.42226 -8.20133 -6.09884 -4.13095 0.92593 1.63799
2.01738 2.59618 2.84626 3.07290 3.25366 3.33644 3.37302 3.91053
4.38122 4.60408 4.72111 4.87486 4.96154 4.98289 5.02705 5.10462
5.15711 5.21947 5.26433 5.33555 5.39042 5.45047 5.48963 5.51115
5.54514 5.57283 5.62692 5.69746 5.74530 5.78705 5.94723 6.01955
6.21592 6.22528 6.36715 6.47169 6.50222 6.79972 6.82219 6.84416
7.30577 7.48753 7.55039 7.60242 7.86753 7.88838 8.28663 8.36413
8.92817 9.52042 11.00913
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.012541 B = 0.003375 C = 0.002943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2232.098607 B = 8295.530869 C = 9513.385930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.544 5.544
3 C 0.020 3.980
4 C 0.035 3.965
5 C 0.121 3.879
6 N -0.609 5.609
7 C 0.170 3.830
8 C -0.202 4.202
9 C -0.127 4.127
10 C -0.142 4.142
11 C -0.221 4.221
12 S 0.138 5.862
13 C 0.529 3.471
14 O -0.531 6.531
15 C 0.074 3.926
16 H 0.093 0.907
17 N -0.828 5.828
18 C -0.142 4.142
19 C 0.025 3.975
20 C -0.523 4.523
21 H 0.055 0.945
22 C 0.059 3.941
23 N -0.891 5.891
24 Si 0.891 3.109
25 H -0.273 1.273
26 H -0.284 1.284
27 H -0.283 1.283
28 H 0.024 0.976
29 H 0.067 0.933
30 H 0.067 0.933
31 H 0.072 0.928
32 H 0.066 0.934
33 H 0.027 0.973
34 H 0.083 0.917
35 H 0.038 0.962
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.105 0.895
39 H 0.101 0.899
40 H 0.138 0.862
41 H 0.135 0.865
42 H 0.161 0.839
43 H 0.355 0.645
44 H 0.346 0.654
45 H 0.058 0.942
46 H 0.058 0.942
47 H 0.018 0.982
48 H 0.019 0.981
49 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.167 3.349 -12.332 21.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.269 5.269
3 C -0.128 4.128
4 C -0.094 4.094
5 C -0.003 4.003
6 N -0.343 5.343
7 C 0.045 3.955
8 C -0.321 4.321
9 C -0.159 4.159
10 C -0.172 4.172
11 C -0.357 4.357
12 S 0.403 5.597
13 C 0.317 3.683
14 O -0.406 6.406
15 C -0.041 4.041
16 H 0.110 0.890
17 N -0.361 5.361
18 C -0.182 4.182
19 C -0.012 4.012
20 C -0.562 4.562
21 H 0.074 0.926
22 C -0.142 4.142
23 N -0.530 5.530
24 Si 0.719 3.281
25 H -0.197 1.197
26 H -0.210 1.210
27 H -0.209 1.209
28 H 0.043 0.957
29 H 0.086 0.914
30 H 0.086 0.914
31 H 0.090 0.910
32 H 0.085 0.915
33 H 0.046 0.954
34 H 0.101 0.899
35 H 0.056 0.944
36 H 0.102 0.898
37 H 0.101 0.899
38 H 0.123 0.877
39 H 0.119 0.881
40 H 0.156 0.844
41 H 0.153 0.847
42 H 0.178 0.822
43 H 0.170 0.830
44 H 0.159 0.841
45 H 0.076 0.924
46 H 0.076 0.924
47 H 0.037 0.963
48 H 0.037 0.963
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -16.934 3.802 -11.353 20.739
hybrid contribution 0.679 -0.367 -0.557 0.952
sum -16.255 3.435 -11.910 20.442
Atomic orbital electron populations
1.22357 0.87314 1.02165 1.00392 1.61975 1.07859 1.14065 1.42977
1.22453 1.01209 0.88725 1.00424 1.22633 0.96162 0.98908 0.91648
1.21389 0.92901 0.97704 0.88271 1.47951 1.63541 1.06019 1.16787
1.20238 0.93051 0.79253 1.02977 1.25031 1.01324 1.08553 0.97219
1.20061 0.92440 1.02309 1.01063 1.20092 1.00293 1.03414 0.93423
1.25831 1.01072 1.08793 0.99988 1.84872 1.08180 1.59487 1.07140
1.20944 0.75952 0.88221 0.83144 1.90623 1.55036 1.14302 1.80665
1.21583 0.97778 0.95313 0.89409 0.88972 1.58730 1.63614 1.09880
1.03848 1.22485 0.92414 1.01210 1.02080 1.19103 0.96167 0.93735
0.92195 1.21193 0.97633 1.29970 1.07363 0.92634 1.25004 0.98194
0.95992 0.95054 1.69959 1.36992 1.34541 1.11532 0.86544 0.84899
0.78304 0.78325 1.19738 1.20967 1.20934 0.95728 0.91402 0.91399
0.90972 0.91548 0.95413 0.89886 0.94383 0.89838 0.89861 0.87675
0.88105 0.84440 0.84705 0.82164 0.83003 0.84089 0.92375 0.92354
0.96334 0.96291 0.92925
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 9.57 60.07 0.57 0.80 16
2 N -0.54 -5.68 5.02 -251.26 -1.26 -6.94 16
3 C 0.02 0.20 9.32 60.07 0.56 0.76 16
4 C 0.04 0.42 5.28 -3.83 -0.02 0.40 16
5 C 0.12 1.46 5.37 -4.04 -0.02 1.44 16
6 N -0.61 -8.35 2.46 -175.05 -0.43 -8.78 16
7 C 0.17 2.06 5.52 -5.19 -0.03 2.04 16
8 C -0.20 -2.45 5.92 -36.00 -0.21 -2.66 16
9 C -0.13 -1.33 8.12 -41.21 -0.33 -1.66 16
10 C -0.14 -1.42 10.18 -41.21 -0.42 -1.84 16
11 C -0.22 -2.40 11.23 29.04 0.33 -2.07 16
12 S 0.14 1.82 20.89 -107.50 -2.25 -0.42 16
13 C 0.53 9.00 6.92 -10.98 -0.08 8.92 16
14 O -0.53 -10.42 15.83 5.56 0.09 -10.34 16
15 C 0.07 1.30 2.37 -68.86 -0.16 1.13 16
16 H 0.09 1.56 4.43 -51.82 -0.23 1.33 16
17 N -0.83 -14.51 8.94 -5.65 -0.05 -14.56 16
18 C -0.14 -2.78 4.45 -26.73 -0.12 -2.89 16
19 C 0.03 0.60 4.74 -27.88 -0.13 0.47 16
20 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16
21 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16
22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
23 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16
24 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16
25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
28 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16
29 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16
30 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16
31 H 0.07 0.74 6.47 -51.93 -0.34 0.40 16
32 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16
33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16
34 H 0.08 0.93 5.46 -51.93 -0.28 0.65 16
35 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16
36 H 0.08 1.13 5.83 -51.93 -0.30 0.82 16
37 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16
38 H 0.11 1.44 4.83 -51.93 -0.25 1.19 16
39 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16
40 H 0.14 1.20 7.75 -52.49 -0.41 0.79 16
41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16
42 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16
43 H 0.35 6.19 7.55 -39.29 -0.30 5.89 16
44 H 0.35 6.07 8.58 -39.29 -0.34 5.74 16
45 H 0.06 1.08 6.43 -51.93 -0.33 0.74 16
46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
47 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16
48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
49 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 398.05 15.07 6.00 6.00
Total: -1.00 -30.94 398.05 -10.38 -41.32
By element:
Atomic # 1 Polarization: 18.36 SS G_CDS: -7.72 Total: 10.64 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: -0.48 Total: -8.05 kcal
Atomic # 7 Polarization: -54.17 SS G_CDS: -1.00 Total: -55.17 kcal
Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.34 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Atomic # 16 Polarization: 1.82 SS G_CDS: -2.25 Total: -0.42 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -30.94 -10.38 -41.32 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424169130.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.669 kcal
(2) G-P(sol) polarization free energy of solvation -30.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds