Wall clock time and date at job start Tue Mar 31 2020 23:18:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46904 * 110.99494 * 2 1
4 4 C 1.46888 * 111.00297 * 123.95776 * 2 1 3
5 5 C 1.53005 * 109.47119 * 170.00085 * 4 2 1
6 6 N 1.46507 * 109.46969 * 180.02562 * 5 4 2
7 7 C 1.46500 * 120.00007 * 90.00298 * 6 5 4
8 8 C 1.50702 * 109.46801 * 269.99555 * 7 6 5
9 9 C 1.33381 * 125.20534 * 90.00074 * 8 7 6
10 10 C 1.38427 * 114.92374 * 180.02562 * 9 8 7
11 11 C 1.33387 * 114.91991 * 0.25034 * 10 9 8
12 12 S 1.75886 * 109.59194 * 359.63459 * 11 10 9
13 13 C 1.34779 * 119.99619 * 269.99615 * 6 5 4
14 14 O 1.21282 * 120.00234 * 0.02562 * 13 6 5
15 15 C 1.50702 * 119.99578 * 180.02562 * 13 6 5
16 16 H 1.08988 * 109.47548 * 320.00180 * 15 13 6
17 17 N 1.46905 * 109.46781 * 199.99772 * 15 13 6
18 18 C 1.53005 * 109.46724 * 80.00468 * 15 13 6
19 19 C 1.53000 * 109.46644 * 184.99520 * 18 15 13
20 20 C 1.50702 * 109.46954 * 179.97438 * 19 18 15
21 21 H 1.07991 * 120.00105 * 0.02562 * 20 19 18
22 22 C 1.37878 * 119.99944 * 180.02562 * 20 19 18
23 23 N 1.31516 * 120.00020 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 119.99967 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47087 * 359.97438 * 24 22 20
26 26 H 1.48497 * 109.47271 * 119.99957 * 24 22 20
27 27 H 1.48504 * 109.46729 * 239.99675 * 24 22 20
28 28 H 1.09001 * 109.46505 * 296.03952 * 1 2 3
29 29 H 1.08997 * 109.47479 * 56.04232 * 1 2 3
30 30 H 1.09004 * 109.46502 * 176.04676 * 1 2 3
31 31 H 1.09005 * 109.46878 * 183.95736 * 3 2 1
32 32 H 1.08994 * 109.47356 * 303.95599 * 3 2 1
33 33 H 1.09003 * 109.46932 * 63.96294 * 3 2 1
34 34 H 1.09000 * 109.47168 * 50.00055 * 4 2 1
35 35 H 1.08998 * 109.47790 * 289.99733 * 4 2 1
36 36 H 1.09000 * 109.47125 * 59.99943 * 5 4 2
37 37 H 1.08995 * 109.47037 * 299.99679 * 5 4 2
38 38 H 1.09000 * 109.46999 * 149.99795 * 7 6 5
39 39 H 1.08995 * 109.47363 * 29.99713 * 7 6 5
40 40 H 1.08001 * 122.53741 * 0.05729 * 9 8 7
41 41 H 1.08002 * 122.53759 * 179.97438 * 10 9 8
42 42 H 1.08002 * 125.20431 * 179.75072 * 11 10 9
43 43 H 1.00897 * 110.99608 * 176.05021 * 17 15 13
44 44 H 1.00900 * 111.00080 * 300.00290 * 17 15 13
45 45 H 1.08999 * 109.47004 * 304.99604 * 18 15 13
46 46 H 1.08997 * 109.47221 * 65.00086 * 18 15 13
47 47 H 1.08999 * 109.47489 * 299.99787 * 19 18 15
48 48 H 1.09002 * 109.47155 * 59.99973 * 19 18 15
49 49 H 0.97003 * 119.99763 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9955 -0.7660 1.1374
5 6 3.5046 -0.9553 0.9701
6 7 4.0295 -1.7198 2.1043
7 6 4.0864 -3.1822 2.0384
8 6 2.7996 -3.7593 2.5695
9 6 1.7164 -4.0252 1.8380
10 6 0.6499 -4.5528 2.5455
11 6 0.8652 -4.7104 3.8524
12 16 2.4960 -4.1845 4.2490
13 6 4.4603 -1.0776 3.2082
14 8 4.4129 0.1330 3.2628
15 6 5.0008 -1.8640 4.3746
16 1 4.3965 -2.7592 4.5206
17 7 4.9518 -1.0368 5.5876
18 6 6.4492 -2.2671 4.0904
19 6 6.9576 -3.1695 5.2166
20 6 8.3840 -3.5671 4.9364
21 1 8.8785 -3.2114 4.0447
22 6 9.0577 -4.3849 5.8187
23 7 8.4556 -4.8176 6.9049
24 14 10.8259 -4.8772 5.4718
25 1 11.2696 -4.2622 4.1950
26 1 11.6971 -4.4056 6.5780
27 1 10.9165 -6.3557 5.3663
28 1 -0.3632 0.4512 0.9234
29 1 -0.3634 0.5740 -0.8524
30 1 -0.3632 -1.0253 -0.0709
31 1 3.0828 1.3434 -0.0709
32 1 1.5897 1.9164 -0.8524
33 1 1.7044 1.8723 0.9234
34 1 1.5091 -1.7407 1.1754
35 1 1.7977 -0.2249 2.0627
36 1 3.9910 0.0194 0.9321
37 1 3.7025 -1.4964 0.0449
38 1 4.9213 -3.5408 2.6405
39 1 4.2246 -3.4942 1.0032
40 1 1.6748 -3.8432 0.7743
41 1 -0.2872 -4.8127 2.0756
42 1 0.1485 -5.1028 4.5586
43 1 5.2487 -1.5625 6.3960
44 1 5.5049 -0.2001 5.4773
45 1 6.4975 -2.8052 3.1437
46 1 7.0704 -1.3734 4.0325
47 1 6.9093 -2.6314 6.1632
48 1 6.3364 -4.0632 5.2745
49 1 8.9295 -5.3934 7.5254
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424169130.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:18:11
Heat of formation + Delta-G solvation = -18.445824 kcal
Electronic energy + Delta-G solvation = -28363.233699 eV
Core-core repulsion = 24644.110008 eV
Total energy + Delta-G solvation = -3719.123691 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.172 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.44636 -38.97477 -38.41793 -37.16358 -36.57855 -34.86337 -32.02337 -31.73703
-30.59004 -28.51983 -28.21445 -27.04433 -26.16120 -24.51533 -24.03772 -22.45224
-21.88277 -20.45609 -20.15295 -18.83508 -18.36674 -18.18957 -17.26008 -16.71606
-16.54664 -16.40385 -16.16918 -16.05898 -15.74526 -15.55176 -15.20134 -14.76797
-14.55917 -14.30515 -14.18571 -14.05146 -13.85539 -13.75031 -13.46308 -13.42353
-13.28382 -12.94193 -12.84653 -12.73781 -12.63811 -12.55466 -12.49903 -12.44859
-11.84525 -11.79520 -11.75042 -11.48402 -11.27736 -10.74088 -10.56325 -10.00386
-9.69580 -9.59692 -9.42294 -9.38944 -8.20824 -6.31328 0.04952 0.72596
1.13734 1.39147 1.40716 1.48002 1.52785 1.71657 2.04624 2.40257
3.05162 3.12931 3.42954 3.67885 3.78060 3.94490 3.98489 4.05249
4.13261 4.18188 4.26229 4.28538 4.42130 4.48432 4.53005 4.59531
4.60733 4.69475 4.71921 4.74548 4.77666 4.84815 4.92663 4.99715
5.03633 5.04320 5.18847 5.36621 5.41467 5.45898 5.61769 5.64298
5.79640 5.95840 5.97380 6.01651 6.19653 6.24060 6.42364 6.83539
7.05784 7.37862 8.90124
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.012541 B = 0.003375 C = 0.002943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2232.098607 B = 8295.530869 C = 9513.385930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.543 5.543
3 C 0.020 3.980
4 C 0.048 3.952
5 C 0.120 3.880
6 N -0.599 5.599
7 C 0.167 3.833
8 C -0.211 4.211
9 C -0.112 4.112
10 C -0.139 4.139
11 C -0.213 4.213
12 S 0.055 5.945
13 C 0.528 3.472
14 O -0.563 6.563
15 C 0.079 3.921
16 H 0.100 0.900
17 N -0.829 5.829
18 C -0.126 4.126
19 C 0.034 3.966
20 C -0.542 4.542
21 H 0.056 0.944
22 C 0.006 3.994
23 N -0.925 5.925
24 Si 0.958 3.042
25 H -0.264 1.264
26 H -0.281 1.281
27 H -0.277 1.277
28 H 0.015 0.985
29 H 0.084 0.916
30 H 0.079 0.921
31 H 0.067 0.933
32 H 0.086 0.914
33 H 0.011 0.989
34 H 0.093 0.907
35 H 0.003 0.997
36 H 0.068 0.932
37 H 0.113 0.887
38 H 0.086 0.914
39 H 0.136 0.864
40 H 0.165 0.835
41 H 0.167 0.833
42 H 0.179 0.821
43 H 0.352 0.648
44 H 0.345 0.655
45 H 0.069 0.931
46 H 0.048 0.952
47 H 0.001 0.999
48 H 0.000 1.000
49 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.224 2.588 -15.201 23.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.267 5.267
3 C -0.128 4.128
4 C -0.081 4.081
5 C -0.002 4.002
6 N -0.331 5.331
7 C 0.043 3.957
8 C -0.330 4.330
9 C -0.144 4.144
10 C -0.169 4.169
11 C -0.349 4.349
12 S 0.318 5.682
13 C 0.316 3.684
14 O -0.441 6.441
15 C -0.036 4.036
16 H 0.117 0.883
17 N -0.360 5.360
18 C -0.165 4.165
19 C -0.003 4.003
20 C -0.580 4.580
21 H 0.075 0.925
22 C -0.192 4.192
23 N -0.565 5.565
24 Si 0.784 3.216
25 H -0.188 1.188
26 H -0.207 1.207
27 H -0.203 1.203
28 H 0.033 0.967
29 H 0.103 0.897
30 H 0.098 0.902
31 H 0.085 0.915
32 H 0.105 0.895
33 H 0.030 0.970
34 H 0.111 0.889
35 H 0.021 0.979
36 H 0.086 0.914
37 H 0.131 0.869
38 H 0.104 0.896
39 H 0.154 0.846
40 H 0.182 0.818
41 H 0.184 0.816
42 H 0.197 0.803
43 H 0.167 0.833
44 H 0.158 0.842
45 H 0.087 0.913
46 H 0.067 0.933
47 H 0.019 0.981
48 H 0.018 0.982
49 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -18.012 3.024 -14.257 23.170
hybrid contribution 0.891 -0.158 0.290 0.950
sum -17.121 2.867 -13.967 22.281
Atomic orbital electron populations
1.22453 0.86060 1.03215 1.00660 1.62036 1.08986 1.13998 1.41707
1.22476 1.01077 0.88741 1.00495 1.22472 0.95933 0.99050 0.90664
1.21535 0.92972 0.97242 0.88483 1.47943 1.62204 1.06908 1.16024
1.20381 0.92713 0.77927 1.04665 1.24937 1.01955 1.10105 0.95971
1.20403 0.91536 1.00300 1.02171 1.20480 1.01264 1.02196 0.92980
1.26040 0.99329 1.08604 1.00921 1.85169 1.11465 1.61643 1.09890
1.20769 0.76191 0.87688 0.83752 1.90605 1.56726 1.15448 1.81365
1.21513 0.96519 0.95794 0.89794 0.88269 1.58737 1.63447 1.09853
1.03981 1.22238 0.93591 0.99837 1.00874 1.18923 0.94929 0.93478
0.92961 1.21603 0.99032 1.29984 1.07398 0.92545 1.25856 1.02493
0.96030 0.94846 1.70076 1.38749 1.35239 1.12462 0.85495 0.79667
0.78095 0.78382 1.18844 1.20682 1.20274 0.96665 0.89735 0.90191
0.91466 0.89494 0.97012 0.88890 0.97899 0.91403 0.86894 0.89602
0.84574 0.81757 0.81596 0.80336 0.83280 0.84201 0.91261 0.93318
0.98099 0.98154 0.92759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.36 9.57 127.69 1.22 1.58 16
2 N -0.54 -10.16 5.02 -948.84 -4.76 -14.92 16
3 C 0.02 0.38 9.32 127.69 1.19 1.57 16
4 C 0.05 1.05 5.28 86.31 0.46 1.51 16
5 C 0.12 2.71 5.37 86.38 0.46 3.17 16
6 N -0.60 -15.91 2.46 -826.13 -2.03 -17.93 16
7 C 0.17 3.82 5.52 85.63 0.47 4.29 16
8 C -0.21 -4.80 5.92 24.59 0.15 -4.66 16
9 C -0.11 -1.98 8.12 21.22 0.17 -1.81 16
10 C -0.14 -2.34 10.18 21.22 0.22 -2.12 16
11 C -0.21 -4.28 11.23 66.72 0.75 -3.53 16
12 S 0.05 1.45 20.89 -56.49 -1.18 0.27 16
13 C 0.53 18.23 6.92 87.66 0.61 18.83 16
14 O -0.56 -22.68 15.83 -3.03 -0.05 -22.73 16
15 C 0.08 2.85 2.37 44.17 0.10 2.95 16
16 H 0.10 3.50 4.43 -2.47 -0.01 3.49 16
17 N -0.83 -30.44 8.94 -171.79 -1.54 -31.98 16
18 C -0.13 -5.04 4.45 30.60 0.14 -4.90 16
19 C 0.03 1.70 4.74 29.85 0.14 1.84 16
20 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16
21 H 0.06 3.01 7.74 -2.92 -0.02 2.98 16
22 C 0.01 0.35 5.46 84.65 0.46 0.82 16
23 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16
24 Si 0.96 43.25 29.54 68.60 2.03 45.27 16
25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16
26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
28 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16
29 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16
30 H 0.08 1.00 8.12 -2.39 -0.02 0.99 16
31 H 0.07 1.32 6.47 -2.38 -0.02 1.30 16
32 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16
33 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16
34 H 0.09 1.82 5.46 -2.39 -0.01 1.81 16
35 H 0.00 0.08 8.12 -2.39 -0.02 0.06 16
36 H 0.07 1.79 5.83 -2.39 -0.01 1.78 16
37 H 0.11 1.91 7.89 -2.39 -0.02 1.89 16
38 H 0.09 2.33 4.83 -2.39 -0.01 2.32 16
39 H 0.14 2.14 7.89 -2.39 -0.02 2.12 16
40 H 0.17 2.04 7.75 -2.91 -0.02 2.02 16
41 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16
42 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16
43 H 0.35 13.07 7.55 -89.70 -0.68 12.39 16
44 H 0.34 12.70 8.58 -89.69 -0.77 11.93 16
45 H 0.07 2.59 6.43 -2.39 -0.02 2.58 16
46 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
47 H 0.00 0.04 6.87 -2.39 -0.02 0.02 16
48 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
49 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16
Total: -1.00 -68.21 398.05 -0.95 -69.15
By element:
Atomic # 1 Polarization: 37.16 SS G_CDS: -0.48 Total: 36.68 kcal
Atomic # 6 Polarization: -16.66 SS G_CDS: 6.77 Total: -9.88 kcal
Atomic # 7 Polarization: -110.73 SS G_CDS: -8.04 Total: -118.77 kcal
Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.73 kcal
Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal
Atomic # 16 Polarization: 1.45 SS G_CDS: -1.18 Total: 0.27 kcal
Total: -68.21 -0.95 -69.15 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424169130.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.707 kcal
(2) G-P(sol) polarization free energy of solvation -68.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.446 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds