Wall clock time and date at job start Tue Mar 31 2020 23:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34631 * 116.99996 * 2 1 4 4 O 1.21509 * 120.00451 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99612 * 180.02562 * 3 2 1 6 6 C 1.46918 * 120.63156 * 359.97438 * 5 3 2 7 7 C 1.53193 * 108.77733 * 126.41622 * 6 5 3 8 8 C 1.53039 * 109.34231 * 54.61575 * 7 6 5 9 9 C 1.53048 * 109.53756 * 298.68910 * 8 7 6 10 10 H 1.08994 * 109.49790 * 301.34554 * 9 8 7 11 11 C 1.50695 * 109.49424 * 181.27951 * 9 8 7 12 12 O 1.20825 * 120.00224 * 0.06405 * 11 9 8 13 13 O 1.34232 * 119.99727 * 180.02562 * 11 9 8 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.41369 * 54.99577 * 15 14 13 17 17 C 1.52954 * 109.41435 * 174.85755 * 15 14 13 18 18 C 1.53230 * 109.40642 * 183.69945 * 17 15 14 19 19 C 1.51264 * 108.53529 * 305.37824 * 18 17 15 20 20 C 1.37878 * 120.84537 * 231.36332 * 19 18 17 21 21 N 1.31516 * 120.00353 * 0.02562 * 20 19 18 22 22 Si 1.86797 * 120.00121 * 180.02562 * 20 19 18 23 23 H 1.48497 * 109.47251 * 90.00112 * 22 20 19 24 24 H 1.48502 * 109.47457 * 210.00315 * 22 20 19 25 25 H 1.48500 * 109.47340 * 329.99924 * 22 20 19 26 26 C 1.51261 * 118.30700 * 51.34340 * 19 18 17 27 27 C 1.52962 * 109.40901 * 295.14064 * 15 14 13 28 28 C 1.46928 * 120.62860 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46927 * 300.00289 * 1 2 3 30 30 H 1.09006 * 109.46969 * 59.99715 * 1 2 3 31 31 H 1.08992 * 109.47527 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.58756 * 246.20078 * 6 5 3 33 33 H 1.09001 * 109.58628 * 6.62739 * 6 5 3 34 34 H 1.08997 * 109.50232 * 174.58823 * 7 6 5 35 35 H 1.09009 * 109.49329 * 294.65061 * 7 6 5 36 36 H 1.08990 * 109.48830 * 178.65099 * 8 7 6 37 37 H 1.09005 * 109.42509 * 58.68825 * 8 7 6 38 38 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 39 39 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 40 40 H 1.09000 * 109.48302 * 303.68612 * 17 15 14 41 41 H 1.09006 * 109.48343 * 63.72310 * 17 15 14 42 42 H 1.09002 * 109.61849 * 65.08923 * 18 17 15 43 43 H 1.08991 * 109.62428 * 185.65434 * 18 17 15 44 44 H 0.96995 * 120.00576 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.62670 * 68.36759 * 26 19 18 46 46 H 1.08997 * 109.63192 * 188.74439 * 26 19 18 47 47 H 1.09002 * 109.48498 * 296.26986 * 27 15 14 48 48 H 1.08997 * 109.48568 * 56.31825 * 27 15 14 49 49 H 1.08993 * 109.59048 * 113.79972 * 28 5 3 50 50 H 1.09001 * 109.70384 * 353.43792 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2125 0.1127 -1.1681 8 6 6.0235 1.4069 -1.0726 9 6 5.0816 2.6094 -1.1682 10 1 4.5353 2.5696 -2.1105 11 6 5.8844 3.8832 -1.1056 12 8 7.0868 3.8349 -0.9970 13 8 5.2637 5.0716 -1.1714 14 6 6.1001 6.2567 -1.1056 15 6 5.2218 7.5064 -1.1945 16 1 4.4586 7.4688 -0.4173 17 6 6.0879 8.7516 -0.9967 18 6 5.1954 9.9971 -0.9935 19 6 4.3747 10.0040 -2.2641 20 6 4.3375 11.1180 -3.0756 21 7 5.0215 12.1927 -2.7491 22 14 3.3154 11.1008 -4.6391 23 1 1.9426 11.5804 -4.3384 24 1 3.9408 11.9918 -5.6492 25 1 3.2503 9.7166 -5.1728 26 6 3.5962 8.7574 -2.6218 27 6 4.5480 7.5577 -2.5667 28 6 4.0907 2.5717 0.0000 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.7706 -0.0278 0.9389 33 1 3.5758 -0.8225 -0.1186 34 1 5.8861 -0.7430 -1.1229 35 1 4.6648 0.0952 -2.1105 36 1 6.7450 1.4450 -1.8887 37 1 6.5518 1.4342 -0.1195 38 1 6.6469 6.2637 -0.1627 39 1 6.8069 6.2491 -1.9354 40 1 6.6157 8.6800 -0.0458 41 1 6.8107 8.8245 -1.8094 42 1 4.5319 9.9697 -0.1291 43 1 5.8162 10.8921 -0.9536 44 1 4.9951 12.9765 -3.3198 45 1 2.7846 8.6152 -1.9083 46 1 3.1866 8.8573 -3.6269 47 1 5.3081 7.6595 -3.3414 48 1 3.9837 6.6394 -2.7292 49 1 4.6277 2.7027 0.9394 50 1 3.3579 3.3702 -0.1164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496514397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:17 Heat of formation + Delta-G solvation = -188.820191 kcal Electronic energy + Delta-G solvation = -30298.585170 eV Core-core repulsion = 26097.027870 eV Total energy + Delta-G solvation = -4201.557300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16118 -40.42526 -38.49807 -37.33568 -36.51290 -35.96368 -33.45755 -32.61844 -31.89965 -29.82129 -29.14220 -28.14926 -25.87595 -25.43111 -24.37131 -22.40907 -21.59023 -21.10267 -20.79094 -20.01469 -19.16810 -18.53815 -17.45235 -17.38810 -16.87954 -16.42423 -16.22939 -16.00598 -15.15623 -14.97376 -14.50965 -14.43182 -14.40623 -13.89998 -13.78272 -13.50250 -13.29348 -13.14187 -12.83921 -12.73076 -12.53298 -12.38651 -12.03200 -11.93737 -11.69954 -11.49314 -11.43287 -11.17600 -11.08564 -11.04473 -10.85554 -10.79503 -10.75740 -10.67793 -10.29349 -10.22890 -9.97569 -9.79472 -9.37581 -9.20717 -8.80881 -8.55511 -8.41029 -6.05958 -3.96078 1.69361 2.19639 2.50016 2.73129 3.30413 3.38447 3.39696 3.50528 4.21201 4.33890 4.40650 4.42127 4.49733 4.73961 4.82047 4.90108 4.91213 4.98117 5.10275 5.16627 5.20708 5.30277 5.35355 5.36409 5.39951 5.42134 5.49165 5.69510 5.69854 5.87232 5.89954 5.97259 6.02014 6.08582 6.34982 6.54660 6.63621 6.73737 6.81380 6.92094 6.97526 7.07110 7.16381 7.22829 7.48688 7.70571 7.76221 7.80418 7.87432 7.93485 8.44109 9.01570 9.59170 11.03761 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.002514 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.392377 B =11135.502684 C =12342.839608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.562 6.562 5 N -0.594 5.594 6 C 0.109 3.891 7 C -0.135 4.135 8 C -0.106 4.106 9 C -0.097 4.097 10 H 0.114 0.886 11 C 0.466 3.534 12 O -0.508 6.508 13 O -0.347 6.347 14 C 0.072 3.928 15 C -0.073 4.073 16 H 0.071 0.929 17 C -0.101 4.101 18 C 0.011 3.989 19 C -0.485 4.485 20 C 0.074 3.926 21 N -0.893 5.893 22 Si 0.886 3.114 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.264 1.264 26 C -0.022 4.022 27 C -0.100 4.100 28 C 0.138 3.862 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.005 0.995 43 H 0.058 0.942 44 H 0.263 0.737 45 H 0.017 0.983 46 H 0.033 0.967 47 H 0.048 0.952 48 H 0.038 0.962 49 H 0.080 0.920 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -28.156 5.209 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.285 6.285 3 C 0.403 3.597 4 O -0.450 6.450 5 N -0.335 5.335 6 C -0.014 4.014 7 C -0.173 4.173 8 C -0.144 4.144 9 C -0.117 4.117 10 H 0.132 0.868 11 C 0.308 3.692 12 O -0.396 6.396 13 O -0.263 6.263 14 C -0.001 4.001 15 C -0.091 4.091 16 H 0.089 0.911 17 C -0.139 4.139 18 C -0.027 4.027 19 C -0.504 4.504 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.715 3.285 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.059 4.059 27 C -0.138 4.138 28 C 0.016 3.984 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.023 0.977 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.098 0.902 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.090 -27.642 5.192 28.203 hybrid contribution -0.399 0.173 -0.949 1.044 sum -2.489 -27.468 4.243 27.905 Atomic orbital electron populations 1.23222 0.74230 1.03455 1.02999 1.86208 1.24274 1.30940 1.87119 1.17998 0.82993 0.82272 0.76396 1.91054 1.64001 1.34795 1.55177 1.46810 1.02062 1.08215 1.76381 1.21825 0.93918 0.86492 0.99139 1.21961 0.98162 0.98155 0.98989 1.21459 0.96958 0.91546 1.04393 1.21453 0.97156 0.90548 1.02536 0.86818 1.23254 0.87273 0.85843 0.72873 1.90657 1.15802 1.88070 1.45103 1.86539 1.42533 1.14866 1.82352 1.23534 0.93316 0.81610 1.01686 1.21129 0.97458 0.90760 0.99764 0.91078 1.21631 0.98040 0.95689 0.98553 1.19366 0.94677 0.93529 0.95087 1.20077 1.27100 0.96386 1.06840 1.24854 0.95235 0.95116 0.97634 1.69836 1.41119 1.03675 1.38457 0.86688 0.80519 0.77791 0.83523 1.20451 1.21746 1.18939 1.19828 0.94972 0.93951 0.97193 1.21560 0.99035 0.98277 0.94932 1.21533 0.95212 0.84605 0.97049 0.91732 0.91689 0.87953 0.90762 0.88650 0.89603 0.90999 0.90185 0.90452 0.91739 0.91450 0.94940 0.92927 0.97711 0.92340 0.92684 0.96453 0.94884 0.93282 0.94331 0.90174 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.42 9.20 -40.30 -0.37 -3.80 16 3 C 0.65 7.50 8.43 54.06 0.46 7.96 16 4 O -0.56 -8.50 15.55 -19.28 -0.30 -8.80 16 5 N -0.59 -5.61 2.97 -178.54 -0.53 -6.14 16 6 C 0.11 0.67 6.45 -3.71 -0.02 0.65 16 7 C -0.13 -0.76 6.08 -26.61 -0.16 -0.92 16 8 C -0.11 -0.84 4.46 -26.69 -0.12 -0.96 16 9 C -0.10 -0.97 2.78 -91.63 -0.25 -1.23 16 10 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 11 C 0.47 6.37 7.26 36.00 0.26 6.63 16 12 O -0.51 -8.01 15.73 -18.75 -0.29 -8.31 16 13 O -0.35 -5.43 9.62 -39.26 -0.38 -5.81 16 14 C 0.07 1.20 4.84 37.16 0.18 1.37 16 15 C -0.07 -1.40 2.33 -90.66 -0.21 -1.61 16 16 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.10 -2.12 5.21 -26.64 -0.14 -2.26 16 18 C 0.01 0.27 5.97 -27.49 -0.16 0.10 16 19 C -0.48 -12.91 5.51 -98.93 -0.55 -13.46 16 20 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 21 N -0.89 -25.97 12.73 55.43 0.71 -25.26 16 22 Si 0.89 21.40 27.53 -169.99 -4.68 16.72 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.26 -6.18 6.11 56.52 0.35 -5.83 16 26 C -0.02 -0.52 5.60 -27.48 -0.15 -0.68 16 27 C -0.10 -2.08 5.15 -26.62 -0.14 -2.22 16 28 C 0.14 1.40 5.65 -3.69 -0.02 1.38 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.52 6.93 -51.93 -0.36 0.16 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 37 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 38 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 39 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.03 0.78 4.59 -51.93 -0.24 0.55 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.04 0.74 7.72 -51.93 -0.40 0.34 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.11 1.41 7.01 -51.93 -0.36 1.05 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -32.51 393.45 -8.51 -41.02 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.53 Total: -3.71 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.06 Total: -1.86 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.18 Total: -31.40 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.34 Total: -26.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.68 Total: 16.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.51 -8.51 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496514397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.797 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds