Wall clock time and date at job start Tue Mar 31 2020 23:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34631 * 116.99996 * 2 1 4 4 O 1.21509 * 120.00451 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99612 * 180.02562 * 3 2 1 6 6 C 1.46918 * 120.63156 * 359.97438 * 5 3 2 7 7 C 1.53193 * 108.77733 * 126.41622 * 6 5 3 8 8 C 1.53039 * 109.34231 * 54.61575 * 7 6 5 9 9 C 1.53048 * 109.53756 * 298.68910 * 8 7 6 10 10 H 1.08994 * 109.49790 * 301.34554 * 9 8 7 11 11 C 1.50695 * 109.49424 * 181.27951 * 9 8 7 12 12 O 1.20825 * 120.00224 * 0.06405 * 11 9 8 13 13 O 1.34232 * 119.99727 * 180.02562 * 11 9 8 14 14 C 1.45206 * 116.99878 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47129 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.41369 * 54.99577 * 15 14 13 17 17 C 1.52954 * 109.41435 * 174.85755 * 15 14 13 18 18 C 1.53230 * 109.40642 * 183.69945 * 17 15 14 19 19 C 1.51264 * 108.53529 * 305.37824 * 18 17 15 20 20 C 1.37878 * 120.84537 * 231.36332 * 19 18 17 21 21 N 1.31516 * 120.00353 * 0.02562 * 20 19 18 22 22 Si 1.86797 * 120.00121 * 180.02562 * 20 19 18 23 23 H 1.48497 * 109.47251 * 90.00112 * 22 20 19 24 24 H 1.48502 * 109.47457 * 210.00315 * 22 20 19 25 25 H 1.48500 * 109.47340 * 329.99924 * 22 20 19 26 26 C 1.51261 * 118.30700 * 51.34340 * 19 18 17 27 27 C 1.52962 * 109.40901 * 295.14064 * 15 14 13 28 28 C 1.46928 * 120.62860 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.46927 * 300.00289 * 1 2 3 30 30 H 1.09006 * 109.46969 * 59.99715 * 1 2 3 31 31 H 1.08992 * 109.47527 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.58756 * 246.20078 * 6 5 3 33 33 H 1.09001 * 109.58628 * 6.62739 * 6 5 3 34 34 H 1.08997 * 109.50232 * 174.58823 * 7 6 5 35 35 H 1.09009 * 109.49329 * 294.65061 * 7 6 5 36 36 H 1.08990 * 109.48830 * 178.65099 * 8 7 6 37 37 H 1.09005 * 109.42509 * 58.68825 * 8 7 6 38 38 H 1.09004 * 109.47122 * 299.99817 * 14 13 11 39 39 H 1.09000 * 109.47070 * 59.99842 * 14 13 11 40 40 H 1.09000 * 109.48302 * 303.68612 * 17 15 14 41 41 H 1.09006 * 109.48343 * 63.72310 * 17 15 14 42 42 H 1.09002 * 109.61849 * 65.08923 * 18 17 15 43 43 H 1.08991 * 109.62428 * 185.65434 * 18 17 15 44 44 H 0.96995 * 120.00576 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.62670 * 68.36759 * 26 19 18 46 46 H 1.08997 * 109.63192 * 188.74439 * 26 19 18 47 47 H 1.09002 * 109.48498 * 296.26986 * 27 15 14 48 48 H 1.08997 * 109.48568 * 56.31825 * 27 15 14 49 49 H 1.08993 * 109.59048 * 113.79972 * 28 5 3 50 50 H 1.09001 * 109.70384 * 353.43792 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2125 0.1127 -1.1681 8 6 6.0235 1.4069 -1.0726 9 6 5.0816 2.6094 -1.1682 10 1 4.5353 2.5696 -2.1105 11 6 5.8844 3.8832 -1.1056 12 8 7.0868 3.8349 -0.9970 13 8 5.2637 5.0716 -1.1714 14 6 6.1001 6.2567 -1.1056 15 6 5.2218 7.5064 -1.1945 16 1 4.4586 7.4688 -0.4173 17 6 6.0879 8.7516 -0.9967 18 6 5.1954 9.9971 -0.9935 19 6 4.3747 10.0040 -2.2641 20 6 4.3375 11.1180 -3.0756 21 7 5.0215 12.1927 -2.7491 22 14 3.3154 11.1008 -4.6391 23 1 1.9426 11.5804 -4.3384 24 1 3.9408 11.9918 -5.6492 25 1 3.2503 9.7166 -5.1728 26 6 3.5962 8.7574 -2.6218 27 6 4.5480 7.5577 -2.5667 28 6 4.0907 2.5717 0.0000 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.7706 -0.0278 0.9389 33 1 3.5758 -0.8225 -0.1186 34 1 5.8861 -0.7430 -1.1229 35 1 4.6648 0.0952 -2.1105 36 1 6.7450 1.4450 -1.8887 37 1 6.5518 1.4342 -0.1195 38 1 6.6469 6.2637 -0.1627 39 1 6.8069 6.2491 -1.9354 40 1 6.6157 8.6800 -0.0458 41 1 6.8107 8.8245 -1.8094 42 1 4.5319 9.9697 -0.1291 43 1 5.8162 10.8921 -0.9536 44 1 4.9951 12.9765 -3.3198 45 1 2.7846 8.6152 -1.9083 46 1 3.1866 8.8573 -3.6269 47 1 5.3081 7.6595 -3.3414 48 1 3.9837 6.6394 -2.7292 49 1 4.6277 2.7027 0.9394 50 1 3.3579 3.3702 -0.1164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496514397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:16 Heat of formation + Delta-G solvation = -206.848176 kcal Electronic energy + Delta-G solvation = -30299.366922 eV Core-core repulsion = 26097.027870 eV Total energy + Delta-G solvation = -4202.339052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05299 -41.43944 -39.41556 -38.76363 -37.45904 -37.23151 -34.55761 -34.19555 -32.62814 -31.63139 -30.93355 -28.75172 -27.12729 -26.26418 -25.44102 -23.56830 -23.05968 -22.73956 -21.79760 -20.93131 -20.75208 -19.32701 -18.56459 -18.21278 -18.01762 -17.70073 -17.41306 -17.25634 -16.41846 -15.84851 -15.78523 -15.42137 -15.18754 -15.09799 -14.91943 -14.60545 -14.52400 -14.44490 -14.28025 -13.89871 -13.88784 -13.58162 -13.38595 -12.96186 -12.87499 -12.71256 -12.60131 -12.52777 -12.39491 -12.13653 -12.05312 -11.86950 -11.81023 -11.79572 -11.69257 -11.59399 -11.45576 -11.44302 -11.24773 -10.71228 -10.53828 -10.41277 -9.93677 -8.16172 -6.09650 0.88858 1.18839 1.38038 1.40353 1.48734 1.61604 1.68373 2.41099 2.87010 3.09933 3.44022 3.56313 3.63698 3.88751 3.96211 3.96694 4.06545 4.09899 4.18658 4.35861 4.37946 4.43188 4.47395 4.49593 4.54832 4.62021 4.71454 4.72110 4.73301 4.77801 4.85696 4.99569 5.00852 5.05720 5.11094 5.15164 5.23358 5.27806 5.29325 5.32695 5.34481 5.45676 5.49033 5.61510 5.66194 5.79050 5.88881 6.16693 6.38113 6.65633 6.96997 7.12340 7.48017 8.94783 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.002514 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.392377 B =11135.502684 C =12342.839608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.644 3.356 4 O -0.607 6.607 5 N -0.589 5.589 6 C 0.104 3.896 7 C -0.125 4.125 8 C -0.103 4.103 9 C -0.087 4.087 10 H 0.118 0.882 11 C 0.467 3.533 12 O -0.528 6.528 13 O -0.356 6.356 14 C 0.081 3.919 15 C -0.066 4.066 16 H 0.069 0.931 17 C -0.092 4.092 18 C 0.006 3.994 19 C -0.497 4.497 20 C 0.018 3.982 21 N -0.934 5.934 22 Si 0.939 3.061 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.250 1.250 26 C -0.025 4.025 27 C -0.095 4.095 28 C 0.140 3.860 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.000 1.000 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.018 0.982 46 H 0.033 0.967 47 H 0.044 0.956 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -31.807 5.061 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.279 6.279 3 C 0.399 3.601 4 O -0.498 6.498 5 N -0.330 5.330 6 C -0.016 4.016 7 C -0.163 4.163 8 C -0.140 4.140 9 C -0.107 4.107 10 H 0.136 0.864 11 C 0.311 3.689 12 O -0.417 6.417 13 O -0.272 6.272 14 C 0.007 3.993 15 C -0.084 4.084 16 H 0.087 0.913 17 C -0.130 4.130 18 C -0.032 4.032 19 C -0.516 4.516 20 C -0.179 4.179 21 N -0.574 5.574 22 Si 0.765 3.235 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.174 1.174 26 C -0.062 4.062 27 C -0.133 4.133 28 C 0.018 3.982 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.109 0.891 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.128 -31.352 5.045 31.827 hybrid contribution -0.402 1.258 -0.821 1.555 sum -2.530 -30.094 4.224 30.494 Atomic orbital electron populations 1.23504 0.72901 1.05688 1.02408 1.86222 1.25545 1.29451 1.86696 1.18244 0.83528 0.82309 0.75979 1.91023 1.65158 1.36354 1.57310 1.46914 1.01680 1.08971 1.75387 1.22104 0.93937 0.85299 1.00293 1.21936 0.98042 0.97701 0.98594 1.21489 0.96675 0.91491 1.04359 1.21520 0.97168 0.89417 1.02622 0.86374 1.23911 0.87334 0.85929 0.71752 1.90650 1.16792 1.88193 1.46039 1.86536 1.42661 1.15292 1.82712 1.23217 0.92536 0.81199 1.02330 1.20944 0.97348 0.91364 0.98771 0.91251 1.21443 0.97388 0.94629 0.99576 1.19345 0.94820 0.94388 0.94639 1.20697 1.26710 0.97253 1.06933 1.25628 0.96566 0.94994 1.00749 1.69972 1.43229 1.04410 1.39795 0.85832 0.79035 0.78363 0.80241 1.20147 1.21889 1.17399 1.19856 0.95316 0.93958 0.97092 1.21476 0.98503 0.97598 0.95743 1.21411 0.94614 0.84596 0.97581 0.92299 0.92406 0.84248 0.89121 0.87490 0.86898 0.91101 0.90499 0.90322 0.90577 0.91494 0.92550 0.93775 0.98135 0.95469 0.92908 0.96318 0.94883 0.93762 0.92497 0.89141 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.77 16 2 O -0.37 -6.10 9.20 -55.40 -0.51 -6.61 16 3 C 0.64 14.25 8.43 129.79 1.09 15.34 16 4 O -0.61 -18.45 15.55 19.81 0.31 -18.14 16 5 N -0.59 -10.06 2.97 -949.18 -2.82 -12.88 16 6 C 0.10 0.96 6.45 86.36 0.56 1.52 16 7 C -0.12 -0.96 6.08 30.67 0.19 -0.78 16 8 C -0.10 -1.34 4.46 30.62 0.14 -1.20 16 9 C -0.09 -1.59 2.78 -11.45 -0.03 -1.62 16 10 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 11 C 0.47 12.00 7.26 71.23 0.52 12.52 16 12 O -0.53 -15.71 15.73 21.97 0.35 -15.36 16 13 O -0.36 -10.57 9.62 -51.44 -0.49 -11.07 16 14 C 0.08 2.55 4.84 71.98 0.35 2.90 16 15 C -0.07 -2.45 2.33 -10.82 -0.03 -2.48 16 16 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 17 C -0.09 -3.84 5.21 30.66 0.16 -3.68 16 18 C 0.01 0.28 5.97 30.10 0.18 0.46 16 19 C -0.50 -26.69 5.51 -16.18 -0.09 -26.78 16 20 C 0.02 1.03 5.46 84.65 0.46 1.49 16 21 N -0.93 -55.95 12.73 21.45 0.27 -55.67 16 22 Si 0.94 44.18 27.53 68.60 1.89 46.07 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.25 -11.04 6.11 99.48 0.61 -10.43 16 26 C -0.02 -1.16 5.60 30.11 0.17 -0.99 16 27 C -0.10 -3.84 5.15 30.66 0.16 -3.68 16 28 C 0.14 2.67 5.65 86.38 0.49 3.16 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 0.79 6.93 -2.39 -0.02 0.78 16 34 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.08 1.09 8.07 -2.39 -0.02 1.07 16 37 H 0.08 1.04 8.13 -2.38 -0.02 1.02 16 38 H 0.08 2.24 8.13 -2.38 -0.02 2.23 16 39 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.03 1.53 7.07 -2.39 -0.02 1.51 16 44 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.03 1.52 4.59 -2.39 -0.01 1.51 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.06 2.08 7.72 -2.39 -0.02 2.06 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.09 2.20 7.01 -2.39 -0.02 2.18 16 Total: -1.00 -71.63 393.45 5.32 -66.31 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.82 Total: 9.41 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.51 Total: -2.06 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -2.55 Total: -68.55 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.35 Total: -51.17 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.89 Total: 46.07 kcal Total: -71.63 5.32 -66.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496514397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.534 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds