Wall clock time and date at job start Tue Mar 31 2020 23:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39952 * 125.81537 * 2 1 4 4 C 1.35279 * 107.97040 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.19371 * 179.97438 * 4 3 2 6 6 N 1.35838 * 107.61195 * 0.26057 * 4 3 2 7 7 C 1.39818 * 126.10328 * 179.74044 * 6 4 3 8 8 C 1.38944 * 119.68743 * 154.72868 * 7 6 4 9 9 C 1.38423 * 119.10306 * 179.72791 * 8 7 6 10 10 C 1.38802 * 118.48236 * 0.53229 * 9 8 7 11 11 C 1.50694 * 120.34922 * 179.75203 * 10 9 8 12 12 N 1.46902 * 109.46970 * 269.97207 * 11 10 9 13 13 C 1.46900 * 110.99976 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47482 * 179.97438 * 13 12 11 15 15 H 1.09004 * 109.46947 * 305.00484 * 14 13 12 16 16 C 1.47203 * 109.46895 * 64.99824 * 14 13 12 17 17 N 9.47189 * 119.26425 * 327.27727 * 4 1 2 18 18 C 1.53001 * 109.47278 * 185.00090 * 14 13 12 19 19 C 1.50701 * 109.46755 * 175.00205 * 18 14 13 20 20 H 1.08002 * 120.00084 * 0.02562 * 19 18 14 21 21 C 1.37872 * 119.99830 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00116 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46988 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47241 * 120.00067 * 23 21 19 26 26 H 1.48501 * 109.46741 * 240.00133 * 23 21 19 27 27 C 1.38122 * 119.29329 * 359.72589 * 10 9 8 28 28 N 1.31897 * 120.84116 * 0.02562 * 27 10 9 29 29 N 1.30813 * 125.81579 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47003 * 90.00317 * 1 2 3 31 31 H 1.09002 * 109.46960 * 210.00599 * 1 2 3 32 32 H 1.09004 * 109.46789 * 330.00676 * 1 2 3 33 33 H 1.08004 * 126.01842 * 0.03182 * 3 2 1 34 34 H 1.09002 * 109.47152 * 90.02378 * 5 4 3 35 35 H 1.09001 * 109.46980 * 330.02479 * 5 4 3 36 36 H 1.09004 * 109.47113 * 210.02460 * 5 4 3 37 37 H 1.08001 * 120.45120 * 359.97244 * 8 7 6 38 38 H 1.07999 * 120.75610 * 180.23461 * 9 8 7 39 39 H 1.08998 * 109.47493 * 29.97667 * 11 10 9 40 40 H 1.09002 * 109.47142 * 149.97630 * 11 10 9 41 41 H 1.00898 * 110.99891 * 303.95636 * 12 11 10 42 42 H 1.09003 * 109.47487 * 300.00126 * 13 12 11 43 43 H 1.09007 * 109.47062 * 60.00105 * 13 12 11 44 44 H 1.08995 * 109.47109 * 294.99705 * 18 14 13 45 45 H 1.08994 * 109.47087 * 55.00047 * 18 14 13 46 46 H 0.97007 * 119.99736 * 180.02562 * 22 21 19 47 47 H 1.08002 * 119.57441 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3260 1.1349 0.0000 4 6 3.6137 0.7203 -0.0006 5 6 4.8335 1.6053 -0.0013 6 7 3.6082 -0.6380 -0.0068 7 6 4.7345 -1.4665 -0.0146 8 6 4.6439 -2.7559 0.4951 9 6 5.7650 -3.5676 0.4762 10 6 6.9451 -3.0545 -0.0440 11 6 8.1922 -3.8996 -0.0800 12 7 8.9493 -3.7084 1.1643 13 6 10.1749 -4.5183 1.1645 14 6 10.9351 -4.2927 2.4730 15 1 11.1185 -3.2267 2.6075 16 6 10.1338 -4.7986 3.5994 17 7 9.5136 -5.1885 4.4709 18 6 12.2706 -5.0376 2.4219 19 6 13.0721 -4.7169 3.6571 20 1 12.6691 -4.0490 4.4041 21 6 14.3199 -5.2762 3.8336 22 7 14.8104 -6.0899 2.9243 23 14 15.3132 -4.8793 5.3651 24 1 14.5434 -3.9461 6.2263 25 1 15.5894 -6.1314 6.1143 26 1 16.5967 -4.2444 4.9717 27 6 6.9639 -1.7613 -0.5288 28 7 5.8779 -1.0132 -0.5020 29 7 2.2725 -1.0608 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9893 2.1611 0.0005 34 1 5.1284 1.8185 1.0262 35 1 4.6046 2.5391 -0.5148 36 1 5.6499 1.0984 -0.5159 37 1 3.7104 -3.1212 0.8969 38 1 5.7236 -4.5755 0.8619 39 1 7.9170 -4.9495 -0.1803 40 1 8.8079 -3.6027 -0.9291 41 1 9.1607 -2.7331 1.3127 42 1 9.9138 -5.5726 1.0727 43 1 10.8042 -4.2253 0.3240 44 1 12.0864 -6.1109 2.3768 45 1 12.8263 -4.7268 1.5373 46 1 15.6882 -6.4837 3.0487 47 1 7.8798 -1.3573 -0.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567678541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:57 Heat of formation + Delta-G solvation = 131.995078 kcal Electronic energy + Delta-G solvation = -27040.687712 eV Core-core repulsion = 23224.936428 eV Total energy + Delta-G solvation = -3815.751284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95226 -40.37702 -37.49469 -35.70031 -34.41515 -33.59031 -33.00679 -32.61231 -31.63859 -30.58085 -28.61572 -27.34917 -26.73783 -24.94283 -24.20234 -22.78147 -22.18660 -21.69643 -20.68086 -20.11914 -17.98700 -17.38116 -16.83734 -16.46696 -15.91086 -15.70682 -15.16779 -15.07838 -14.73680 -14.50861 -14.22015 -14.16055 -13.97566 -13.82091 -13.55972 -13.44130 -13.29310 -12.97610 -12.75469 -12.62747 -12.49619 -12.40755 -12.14397 -12.03954 -11.93899 -11.66140 -11.23795 -11.09742 -10.96960 -10.74366 -10.57697 -10.34469 -10.29296 -10.17011 -9.84297 -9.60243 -9.26727 -9.15923 -8.59788 -8.49729 -8.39272 -6.13652 -4.16838 0.37156 0.87986 1.66020 1.86105 2.37813 3.25826 3.34278 3.34955 3.39044 3.68279 3.77615 3.96371 4.12426 4.20542 4.33658 4.38800 4.49370 4.59172 4.62949 4.75090 4.84914 4.90193 5.07723 5.19887 5.21462 5.24783 5.27639 5.29761 5.35377 5.35739 5.41767 5.50907 5.52406 5.65316 5.68095 5.70661 5.91660 5.93730 5.99577 6.13188 6.28374 6.29828 6.42413 6.83351 6.91247 7.12851 7.31237 7.37560 7.47872 7.58365 7.81755 8.18668 8.54082 8.88169 9.49081 10.97168 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.001709 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.382331 B =16384.035504 C =16502.922552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.088 3.912 3 C -0.271 4.271 4 C 0.114 3.886 5 C -0.106 4.106 6 N -0.325 5.325 7 C 0.363 3.637 8 C -0.159 4.159 9 C -0.031 4.031 10 C -0.136 4.136 11 C 0.103 3.897 12 N -0.690 5.690 13 C 0.066 3.934 14 C 0.010 3.990 15 H 0.099 0.901 16 C 0.253 3.747 17 N -0.478 5.478 18 C 0.031 3.969 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.134 3.866 28 N -0.500 5.500 29 N -0.287 5.287 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.343 0.657 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.027 0.973 45 H 0.038 0.962 46 H 0.262 0.738 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.983 13.739 -12.562 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.299 4.299 4 C -0.009 4.009 5 C -0.164 4.164 6 N -0.103 5.103 7 C 0.136 3.864 8 C -0.181 4.181 9 C -0.058 4.058 10 C -0.139 4.139 11 C -0.026 4.026 12 N -0.321 5.321 13 C -0.064 4.064 14 C -0.012 4.012 15 H 0.117 0.883 16 C -0.063 4.063 17 N -0.155 5.155 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.024 4.024 28 N -0.213 5.213 29 N -0.107 5.107 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.171 0.829 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.161 0.839 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.987 12.115 -11.261 29.137 hybrid contribution 1.388 0.833 0.260 1.640 sum -22.599 12.948 -11.000 28.273 Atomic orbital electron populations 1.20230 0.86039 1.03636 1.03250 1.22538 0.97197 0.90693 0.97626 1.21231 0.90852 0.99999 1.17850 1.21517 0.97690 0.83662 0.98015 1.20747 0.94270 0.97742 1.03671 1.45600 1.03642 1.03684 1.57400 1.17666 0.84567 0.88194 0.95960 1.21669 1.01046 0.93247 1.02159 1.21476 0.90706 1.00198 0.93372 1.20881 0.96566 0.96079 1.00420 1.20777 0.90821 0.99315 0.91711 1.60572 1.23272 1.13570 1.34691 1.22110 0.88911 0.98750 0.96579 1.19217 0.94521 1.01722 0.85730 0.88275 1.28968 0.91378 0.92379 0.93620 1.81099 1.12516 1.10379 1.11528 1.19176 0.87301 0.95713 0.98550 1.21178 1.01447 1.28593 1.05264 0.92438 1.24952 0.97697 0.94833 0.96486 1.69947 1.18058 1.30726 1.34242 0.86537 0.80021 0.78330 0.83204 1.19685 1.20945 1.20849 1.22473 0.94959 0.89776 0.95185 1.66907 0.98731 1.38185 1.17441 1.77429 0.84571 1.22395 1.26317 0.90192 0.90646 0.90086 0.82900 0.90467 0.89951 0.87842 0.83819 0.83601 0.89618 0.93434 0.83898 0.90270 0.92922 0.95512 0.94386 0.92834 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.44 36.01 0.38 -0.06 16 2 C 0.09 0.88 7.21 -82.38 -0.59 0.29 16 3 C -0.27 -2.58 10.65 -39.99 -0.43 -3.01 16 4 C 0.11 1.24 6.89 -81.87 -0.56 0.67 16 5 C -0.11 -0.88 9.98 36.01 0.36 -0.52 16 6 N -0.33 -4.09 3.78 -8.38 -0.03 -4.12 16 7 C 0.36 4.41 7.36 -154.37 -1.14 3.27 16 8 C -0.16 -1.76 9.74 -39.25 -0.38 -2.15 16 9 C -0.03 -0.30 9.85 -39.30 -0.39 -0.69 16 10 C -0.14 -1.26 5.41 -104.46 -0.57 -1.83 16 11 C 0.10 0.91 5.83 -4.98 -0.03 0.88 16 12 N -0.69 -7.73 6.19 -115.05 -0.71 -8.44 16 13 C 0.07 0.86 5.05 -3.82 -0.02 0.84 16 14 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 15 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.25 5.12 13.68 -20.68 -0.28 4.84 16 17 N -0.48 -10.68 18.55 42.25 0.78 -9.89 16 18 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 19 C -0.53 -13.72 8.60 -34.44 -0.30 -14.02 16 20 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 23 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.13 1.22 10.85 -17.57 -0.19 1.03 16 28 N -0.50 -5.52 7.65 -12.29 -0.09 -5.62 16 29 N -0.29 -3.60 12.10 33.69 0.41 -3.19 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.95 5.85 -51.93 -0.30 0.65 16 37 H 0.14 1.54 7.91 -52.49 -0.42 1.13 16 38 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 41 H 0.34 3.50 8.72 -39.29 -0.34 3.16 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 406.36 15.07 6.12 6.12 Total: -1.00 -33.10 406.36 -9.32 -42.41 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.93 Total: -0.66 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -4.58 Total: -8.32 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 1.09 Total: -55.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.10 -9.32 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567678541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.407 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds