Wall clock time and date at job start Tue Mar 31 2020 23:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39952 * 125.81537 * 2 1 4 4 C 1.35279 * 107.97040 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.19371 * 179.97438 * 4 3 2 6 6 N 1.35838 * 107.61195 * 0.26057 * 4 3 2 7 7 C 1.39818 * 126.10328 * 179.74044 * 6 4 3 8 8 C 1.38944 * 119.68743 * 154.72868 * 7 6 4 9 9 C 1.38423 * 119.10306 * 179.72791 * 8 7 6 10 10 C 1.38802 * 118.48236 * 0.53229 * 9 8 7 11 11 C 1.50694 * 120.34922 * 179.75203 * 10 9 8 12 12 N 1.46902 * 109.46970 * 269.97207 * 11 10 9 13 13 C 1.46900 * 110.99976 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47482 * 179.97438 * 13 12 11 15 15 H 1.09004 * 109.46947 * 305.00484 * 14 13 12 16 16 C 1.47203 * 109.46895 * 64.99824 * 14 13 12 17 17 N 9.47189 * 119.26425 * 327.27727 * 4 1 2 18 18 C 1.53001 * 109.47278 * 185.00090 * 14 13 12 19 19 C 1.50701 * 109.46755 * 175.00205 * 18 14 13 20 20 H 1.08002 * 120.00084 * 0.02562 * 19 18 14 21 21 C 1.37872 * 119.99830 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00116 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46988 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47241 * 120.00067 * 23 21 19 26 26 H 1.48501 * 109.46741 * 240.00133 * 23 21 19 27 27 C 1.38122 * 119.29329 * 359.72589 * 10 9 8 28 28 N 1.31897 * 120.84116 * 0.02562 * 27 10 9 29 29 N 1.30813 * 125.81579 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47003 * 90.00317 * 1 2 3 31 31 H 1.09002 * 109.46960 * 210.00599 * 1 2 3 32 32 H 1.09004 * 109.46789 * 330.00676 * 1 2 3 33 33 H 1.08004 * 126.01842 * 0.03182 * 3 2 1 34 34 H 1.09002 * 109.47152 * 90.02378 * 5 4 3 35 35 H 1.09001 * 109.46980 * 330.02479 * 5 4 3 36 36 H 1.09004 * 109.47113 * 210.02460 * 5 4 3 37 37 H 1.08001 * 120.45120 * 359.97244 * 8 7 6 38 38 H 1.07999 * 120.75610 * 180.23461 * 9 8 7 39 39 H 1.08998 * 109.47493 * 29.97667 * 11 10 9 40 40 H 1.09002 * 109.47142 * 149.97630 * 11 10 9 41 41 H 1.00898 * 110.99891 * 303.95636 * 12 11 10 42 42 H 1.09003 * 109.47487 * 300.00126 * 13 12 11 43 43 H 1.09007 * 109.47062 * 60.00105 * 13 12 11 44 44 H 1.08995 * 109.47109 * 294.99705 * 18 14 13 45 45 H 1.08994 * 109.47087 * 55.00047 * 18 14 13 46 46 H 0.97007 * 119.99736 * 180.02562 * 22 21 19 47 47 H 1.08002 * 119.57441 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3260 1.1349 0.0000 4 6 3.6137 0.7203 -0.0006 5 6 4.8335 1.6053 -0.0013 6 7 3.6082 -0.6380 -0.0068 7 6 4.7345 -1.4665 -0.0146 8 6 4.6439 -2.7559 0.4951 9 6 5.7650 -3.5676 0.4762 10 6 6.9451 -3.0545 -0.0440 11 6 8.1922 -3.8996 -0.0800 12 7 8.9493 -3.7084 1.1643 13 6 10.1749 -4.5183 1.1645 14 6 10.9351 -4.2927 2.4730 15 1 11.1185 -3.2267 2.6075 16 6 10.1338 -4.7986 3.5994 17 7 9.5136 -5.1885 4.4709 18 6 12.2706 -5.0376 2.4219 19 6 13.0721 -4.7169 3.6571 20 1 12.6691 -4.0490 4.4041 21 6 14.3199 -5.2762 3.8336 22 7 14.8104 -6.0899 2.9243 23 14 15.3132 -4.8793 5.3651 24 1 14.5434 -3.9461 6.2263 25 1 15.5894 -6.1314 6.1143 26 1 16.5967 -4.2444 4.9717 27 6 6.9639 -1.7613 -0.5288 28 7 5.8779 -1.0132 -0.5020 29 7 2.2725 -1.0608 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9893 2.1611 0.0005 34 1 5.1284 1.8185 1.0262 35 1 4.6046 2.5391 -0.5148 36 1 5.6499 1.0984 -0.5159 37 1 3.7104 -3.1212 0.8969 38 1 5.7236 -4.5755 0.8619 39 1 7.9170 -4.9495 -0.1803 40 1 8.8079 -3.6027 -0.9291 41 1 9.1607 -2.7331 1.3127 42 1 9.9138 -5.5726 1.0727 43 1 10.8042 -4.2253 0.3240 44 1 12.0864 -6.1109 2.3768 45 1 12.8263 -4.7268 1.5373 46 1 15.6882 -6.4837 3.0487 47 1 7.8798 -1.3573 -0.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567678541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:56 Heat of formation + Delta-G solvation = 113.398436 kcal Electronic energy + Delta-G solvation = -27041.494123 eV Core-core repulsion = 23224.936428 eV Total energy + Delta-G solvation = -3816.557695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70126 -41.12747 -38.75242 -36.88538 -35.60603 -35.03639 -33.84559 -33.66279 -32.79060 -31.48374 -29.44908 -28.17257 -28.00103 -26.00303 -24.95351 -24.06570 -23.44043 -22.83076 -21.42420 -20.83232 -18.75425 -18.69312 -18.34307 -17.68370 -16.79000 -16.65627 -16.51433 -15.86944 -15.80242 -15.66023 -15.26235 -15.00978 -14.80229 -14.59708 -14.49116 -14.24064 -14.20376 -14.05970 -13.90921 -13.72299 -13.47717 -13.29927 -13.22793 -13.15576 -13.01291 -12.91549 -12.77527 -12.55430 -12.47460 -12.27943 -11.87256 -11.70053 -11.41659 -11.19235 -10.99063 -10.94946 -10.59216 -10.54370 -9.93500 -9.38607 -9.19228 -8.18852 -6.26228 -0.40809 0.12981 0.90116 1.12427 1.38897 1.42789 1.52347 1.67426 2.08756 2.15367 2.41904 2.57821 3.16998 3.24098 3.31896 3.41405 3.42683 3.69245 3.77132 3.87704 3.92379 4.06416 4.20248 4.24490 4.43319 4.47631 4.52098 4.67594 4.68536 4.71020 4.73279 4.78019 4.81658 4.82977 4.90564 4.94376 5.02381 5.07252 5.11415 5.23090 5.30479 5.42110 5.50026 5.63798 5.65763 5.81229 6.00785 6.08273 6.23338 6.38919 6.52207 6.81990 6.85597 6.96483 7.42422 8.91923 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.001709 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.382331 B =16384.035504 C =16502.922552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.082 3.918 3 C -0.273 4.273 4 C 0.094 3.906 5 C -0.101 4.101 6 N -0.341 5.341 7 C 0.342 3.658 8 C -0.173 4.173 9 C -0.034 4.034 10 C -0.134 4.134 11 C 0.109 3.891 12 N -0.701 5.701 13 C 0.080 3.920 14 C 0.019 3.981 15 H 0.120 0.880 16 C 0.265 3.735 17 N -0.520 5.520 18 C 0.037 3.963 19 C -0.538 4.538 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.922 5.922 23 Si 0.945 3.055 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.137 3.863 28 N -0.509 5.509 29 N -0.327 5.327 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.351 0.649 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.001 0.999 45 H 0.040 0.960 46 H 0.263 0.737 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.092 15.517 -13.402 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.301 4.301 4 C -0.029 4.029 5 C -0.159 4.159 6 N -0.120 5.120 7 C 0.117 3.883 8 C -0.195 4.195 9 C -0.061 4.061 10 C -0.137 4.137 11 C -0.020 4.020 12 N -0.333 5.333 13 C -0.050 4.050 14 C -0.002 4.002 15 H 0.138 0.862 16 C -0.051 4.051 17 N -0.198 5.198 18 C -0.002 4.002 19 C -0.576 4.576 20 H 0.071 0.929 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.772 3.228 24 H -0.195 1.195 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.021 4.021 28 N -0.222 5.222 29 N -0.148 5.148 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.198 0.802 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.170 0.830 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.019 0.981 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -24.114 13.912 -12.102 30.356 hybrid contribution 1.387 0.301 0.508 1.507 sum -22.727 14.213 -11.594 29.205 Atomic orbital electron populations 1.20389 0.83450 1.04716 1.04375 1.23254 0.98860 0.90387 0.96087 1.21648 0.90330 1.01158 1.16970 1.22104 0.99160 0.83484 0.98138 1.20778 0.93048 0.98084 1.03983 1.45786 1.03688 1.04373 1.58158 1.17936 0.85085 0.88670 0.96652 1.21694 1.01344 0.93518 1.02972 1.21649 0.90736 1.00472 0.93211 1.20943 0.96393 0.96234 1.00093 1.20781 0.90431 0.99390 0.91415 1.60458 1.22461 1.13935 1.36467 1.21889 0.89657 0.98926 0.94539 1.19227 0.92275 1.01818 0.86928 0.86208 1.29581 0.90749 0.91363 0.93408 1.81102 1.14037 1.11704 1.12919 1.19003 0.89457 0.94712 0.97025 1.21606 1.01792 1.27857 1.06361 0.92922 1.25672 0.99007 0.95049 0.98949 1.70030 1.18517 1.31859 1.35787 0.85690 0.79065 0.77878 0.80196 1.19541 1.21302 1.19809 1.23011 0.95350 0.89573 0.94178 1.66995 0.98842 1.38600 1.17722 1.77377 0.85156 1.24061 1.28168 0.88901 0.90767 0.87777 0.80160 0.90191 0.87691 0.88784 0.84536 0.82767 0.89507 0.90915 0.83024 0.90875 0.90552 0.98061 0.94224 0.92779 0.78691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.44 71.24 0.74 -0.01 16 2 C 0.08 1.62 7.21 43.13 0.31 1.93 16 3 C -0.27 -4.92 10.65 22.00 0.23 -4.69 16 4 C 0.09 1.99 6.89 41.26 0.28 2.28 16 5 C -0.10 -1.57 9.98 71.24 0.71 -0.86 16 6 N -0.34 -8.76 3.78 -180.43 -0.68 -9.45 16 7 C 0.34 8.46 7.36 132.76 0.98 9.44 16 8 C -0.17 -3.96 9.74 22.48 0.22 -3.74 16 9 C -0.03 -0.66 9.85 22.45 0.22 -0.44 16 10 C -0.13 -2.23 5.41 -19.76 -0.11 -2.33 16 11 C 0.11 1.60 5.83 85.55 0.50 2.10 16 12 N -0.70 -13.79 6.19 -517.92 -3.21 -17.00 16 13 C 0.08 1.87 5.05 86.30 0.44 2.30 16 14 C 0.02 0.63 2.35 -12.60 -0.03 0.60 16 15 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 16 C 0.26 10.49 13.68 89.41 1.22 11.71 16 17 N -0.52 -23.09 18.55 20.04 0.37 -22.72 16 18 C 0.04 1.61 4.42 29.85 0.13 1.74 16 19 C -0.54 -27.72 8.60 25.60 0.22 -27.50 16 20 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 21 C 0.01 0.66 5.46 84.65 0.46 1.12 16 22 N -0.92 -51.80 13.29 21.45 0.28 -51.51 16 23 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.14 2.23 10.85 84.66 0.92 3.15 16 28 N -0.51 -10.88 7.65 -192.80 -1.47 -12.35 16 29 N -0.33 -8.45 12.10 -47.34 -0.57 -9.02 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.65 5.85 -2.38 -0.01 1.64 16 37 H 0.14 3.18 7.91 -2.91 -0.02 3.16 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.09 1.30 8.09 -2.39 -0.02 1.29 16 40 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 41 H 0.35 6.05 8.72 -89.70 -0.78 5.26 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 47 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -72.43 406.36 4.41 -68.03 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.21 Total: 12.35 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 7.46 Total: -3.21 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -5.28 Total: -122.05 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -72.43 4.41 -68.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567678541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.424 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds