Wall clock time and date at job start Tue Mar 31 2020 23:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47243 * 2 1 4 4 C 1.76199 * 102.99885 * 180.02562 * 3 2 1 5 5 C 1.39210 * 119.71050 * 180.25336 * 4 3 2 6 6 C 1.38266 * 119.09411 * 180.24593 * 5 4 3 7 7 C 1.50692 * 120.74308 * 179.77880 * 6 5 4 8 8 N 1.46898 * 109.47322 * 269.71849 * 7 6 5 9 9 C 1.46900 * 110.99985 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46945 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47076 * 60.00021 * 10 9 8 12 12 O 1.42901 * 109.46988 * 300.00078 * 10 9 8 13 13 C 1.53001 * 109.47020 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47094 * 180.46532 * 13 10 9 15 15 C 1.46897 * 111.00257 * 199.84917 * 14 13 10 16 16 C 1.46903 * 111.00263 * 75.89387 * 14 13 10 17 17 C 1.50698 * 109.47127 * 190.00388 * 16 14 13 18 18 H 1.08006 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00036 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47272 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47351 * 120.00232 * 21 19 17 24 24 H 1.48506 * 109.47157 * 240.00060 * 21 19 17 25 25 C 1.38910 * 118.51079 * 359.50488 * 6 5 4 26 26 C 1.38032 * 119.34026 * 0.25070 * 25 6 5 27 27 N 1.31956 * 120.86133 * 0.02562 * 26 25 6 28 28 H 1.08996 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47175 * 300.00135 * 1 2 3 30 30 H 1.09002 * 109.47258 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99865 * 2 1 3 32 32 H 1.09002 * 109.47258 * 120.00062 * 2 1 3 33 33 H 1.08001 * 120.44810 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.47271 * 149.71828 * 7 6 5 35 35 H 1.09003 * 109.47521 * 29.72512 * 7 6 5 36 36 H 1.00903 * 110.99864 * 56.04502 * 8 7 6 37 37 H 1.08998 * 109.47445 * 299.99997 * 9 8 7 38 38 H 1.09001 * 109.47216 * 60.00183 * 9 8 7 39 39 H 0.96701 * 114.00160 * 299.99950 * 12 10 9 40 40 H 1.09001 * 109.47110 * 300.46064 * 13 10 9 41 41 H 1.08994 * 109.47309 * 60.45921 * 13 10 9 42 42 H 1.08998 * 109.47057 * 64.81426 * 15 14 13 43 43 H 1.08998 * 109.47318 * 184.81746 * 15 14 13 44 44 H 1.09005 * 109.46716 * 304.82181 * 15 14 13 45 45 H 1.09007 * 109.46775 * 310.00046 * 16 14 13 46 46 H 1.08996 * 109.47473 * 69.99941 * 16 14 13 47 47 H 0.96999 * 119.99906 * 179.97438 * 20 19 17 48 48 H 1.08005 * 120.33262 * 180.23039 * 25 6 5 49 49 H 1.07999 * 119.56868 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.8854 1.5116 -0.0008 5 6 4.7073 2.6352 0.0044 6 6 6.0794 2.4645 -0.0015 7 6 7.0037 3.6547 -0.0012 8 7 7.3040 4.0418 -1.3860 9 6 8.2052 5.2013 -1.4249 10 6 8.4938 5.5743 -2.8804 11 1 7.5596 5.8232 -3.3838 12 8 9.1115 4.4685 -3.5420 13 6 9.4329 6.7815 -2.9209 14 7 9.7012 7.1466 -4.3183 15 6 10.9212 7.9576 -4.4257 16 6 8.5517 7.8440 -4.9102 17 6 8.7597 7.9837 -6.3962 18 1 9.6564 7.5938 -6.8550 19 6 7.8053 8.6092 -7.1702 20 7 6.7133 9.0835 -6.6115 21 14 8.0635 8.7830 -9.0120 22 1 9.3624 8.1702 -9.3898 23 1 6.9633 8.0941 -9.7333 24 1 8.0698 10.2224 -9.3774 25 6 6.5867 1.1714 -0.0018 26 6 5.7136 0.1023 -0.0016 27 7 4.4081 0.2945 -0.0015 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2789 3.6266 0.0093 34 1 7.9294 3.3957 0.5126 35 1 6.5237 4.4875 0.5130 36 1 6.4566 4.2246 -1.9023 37 1 7.7339 6.0449 -0.9206 38 1 9.1393 4.9525 -0.9211 39 1 9.9496 4.1919 -3.1468 40 1 8.9656 7.6227 -2.4090 41 1 10.3702 6.5296 -2.4248 42 1 11.7820 7.3607 -4.1241 43 1 11.0499 8.2856 -5.4572 44 1 10.8371 8.8283 -3.7753 45 1 7.6434 7.2712 -4.7227 46 1 8.4565 8.8330 -4.4621 47 1 6.0420 9.5239 -7.1559 48 1 7.6537 1.0041 -0.0025 49 1 6.1041 -0.9046 -0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581939536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:26 Heat of formation + Delta-G solvation = -17.620082 kcal Electronic energy + Delta-G solvation = -26075.655343 eV Core-core repulsion = 22356.567458 eV Total energy + Delta-G solvation = -3719.087884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35657 -38.18932 -36.29392 -35.14825 -33.25458 -32.72261 -32.45759 -31.53612 -29.72936 -27.37425 -26.81065 -24.76805 -24.58635 -23.25146 -23.20602 -22.12776 -21.52508 -20.02866 -17.76912 -16.97272 -16.51186 -16.40670 -16.17128 -15.61387 -15.53683 -15.26456 -15.06317 -14.77226 -14.66922 -14.52571 -14.20229 -14.04064 -13.60428 -13.36559 -13.10151 -12.80101 -12.66787 -12.43458 -12.22959 -11.97172 -11.89321 -11.85073 -11.58773 -11.40630 -11.14063 -10.88982 -10.68477 -10.66174 -10.61741 -10.34466 -10.15954 -9.94345 -9.89036 -9.75716 -9.48810 -9.10016 -8.52936 -8.41236 -7.83438 -7.19157 -6.00784 -4.00964 0.75586 0.92230 1.17464 1.97169 3.33224 3.37450 3.40611 3.45994 4.00737 4.25573 4.38912 4.45683 4.59625 4.59967 4.69763 4.81206 4.83615 4.90559 4.95565 5.02965 5.21131 5.24432 5.30693 5.34684 5.39758 5.42121 5.43550 5.47110 5.59168 5.61791 5.68652 5.68981 5.72036 6.02987 6.05934 6.13909 6.31809 6.32240 6.47712 6.72848 6.79937 7.19582 7.28464 7.32134 7.47790 7.82511 8.09919 8.18841 8.27458 8.57384 9.06681 9.62943 11.10415 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002019 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.407692 B =13862.155204 C =15534.953952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 S -0.084 6.084 4 C 0.121 3.879 5 C -0.144 4.144 6 C -0.018 4.018 7 C 0.096 3.904 8 N -0.672 5.672 9 C 0.028 3.972 10 C 0.119 3.881 11 H 0.099 0.901 12 O -0.529 6.529 13 C 0.026 3.974 14 N -0.530 5.530 15 C 0.038 3.962 16 C 0.192 3.808 17 C -0.503 4.503 18 H 0.064 0.936 19 C 0.053 3.947 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.286 1.286 25 C -0.154 4.154 26 C 0.112 3.888 27 N -0.494 5.494 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.347 0.653 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.361 0.639 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.007 0.993 45 H 0.030 0.970 46 H -0.012 1.012 47 H 0.260 0.740 48 H 0.139 0.861 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.726 -16.610 19.673 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.245 4.245 3 S 0.156 5.844 4 C -0.127 4.127 5 C -0.171 4.171 6 C -0.028 4.028 7 C -0.033 4.033 8 N -0.304 5.304 9 C -0.102 4.102 10 C 0.058 3.942 11 H 0.117 0.883 12 O -0.332 6.332 13 C -0.104 4.104 14 N -0.254 5.254 15 C -0.111 4.111 16 C 0.067 3.933 17 C -0.542 4.542 18 H 0.082 0.918 19 C -0.148 4.148 20 N -0.540 5.540 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.212 1.212 25 C -0.178 4.178 26 C -0.048 4.048 27 N -0.207 5.207 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.154 0.846 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.166 0.834 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.205 0.795 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.005 0.995 47 H 0.070 0.930 48 H 0.157 0.843 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.171 -17.113 18.902 26.234 hybrid contribution 1.136 1.268 0.151 1.709 sum -5.036 -15.845 19.053 25.287 Atomic orbital electron populations 1.21576 0.92187 1.03016 1.03158 1.23377 0.99260 0.95304 1.06597 1.85645 0.94501 1.12618 1.91623 1.22925 0.98638 0.91550 0.99598 1.21558 0.93135 0.99069 1.03322 1.20105 0.93079 0.95440 0.94154 1.20924 0.97639 0.93418 0.91358 1.60384 1.20198 1.38706 1.11063 1.22757 0.97209 0.91201 0.99045 1.21850 0.96918 0.85871 0.89528 0.88289 1.86693 1.39326 1.49590 1.57563 1.22665 0.98443 0.97039 0.92208 1.62010 1.05514 1.44892 1.12997 1.22226 0.92148 0.94449 1.02262 1.19768 0.87672 0.91094 0.94737 1.21200 1.05067 1.35850 0.92047 0.91776 1.24995 0.95161 0.95718 0.98887 1.69965 1.09032 1.39379 1.35654 0.86441 0.78283 0.77484 0.85220 1.19635 1.20987 1.21198 1.21989 1.01650 0.92458 1.01672 1.22685 0.88056 0.99553 0.94487 1.67993 1.15187 1.22573 1.14945 0.90665 0.91708 0.91550 0.89041 0.89192 0.84557 0.89601 0.93901 0.83421 0.94420 0.90785 0.79454 0.95152 0.92154 0.93735 0.90452 0.97461 0.95206 0.99451 0.93042 0.84316 0.82421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.92 37.16 0.37 -0.48 16 2 C -0.10 -0.78 5.92 37.16 0.22 -0.56 16 3 S -0.08 -0.85 21.91 -107.50 -2.36 -3.20 16 4 C 0.12 1.39 7.00 -16.92 -0.12 1.27 16 5 C -0.14 -1.55 9.54 -39.21 -0.37 -1.92 16 6 C -0.02 -0.18 5.43 -104.37 -0.57 -0.75 16 7 C 0.10 0.89 5.86 -4.98 -0.03 0.86 16 8 N -0.67 -7.79 6.36 -115.06 -0.73 -8.53 16 9 C 0.03 0.33 5.35 -3.82 -0.02 0.31 16 10 C 0.12 1.88 3.24 -26.73 -0.09 1.80 16 11 H 0.10 1.88 6.78 -51.93 -0.35 1.53 16 12 O -0.53 -8.99 13.08 -35.23 -0.46 -9.45 16 13 C 0.03 0.45 4.66 -3.82 -0.02 0.43 16 14 N -0.53 -11.41 4.56 -244.37 -1.11 -12.52 16 15 C 0.04 0.73 9.37 60.06 0.56 1.30 16 16 C 0.19 5.04 4.55 -4.98 -0.02 5.02 16 17 C -0.50 -14.37 8.39 -34.44 -0.29 -14.66 16 18 H 0.06 1.83 7.17 -52.48 -0.38 1.45 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 21 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C -0.15 -1.44 9.81 -39.41 -0.39 -1.82 16 26 C 0.11 1.07 11.17 -17.57 -0.20 0.87 16 27 N -0.49 -5.62 9.43 -12.11 -0.11 -5.74 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 36 H 0.35 4.37 8.72 -39.29 -0.34 4.02 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.36 4.74 9.04 45.56 0.41 5.15 16 40 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 41 H 0.06 0.87 7.94 -51.93 -0.41 0.45 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.63 6.66 -51.93 -0.35 1.29 16 44 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 45 H 0.03 0.83 6.63 -51.92 -0.34 0.49 16 46 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 49 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 416.15 15.07 6.27 6.27 Total: -1.00 -33.01 416.15 -11.49 -44.49 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.65 Total: 4.84 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.05 Total: -6.90 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -1.22 Total: -53.05 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.46 Total: -9.45 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.36 Total: -3.20 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.01 -11.49 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581939536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.875 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds