Wall clock time and date at job start Tue Mar 31 2020 23:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47243 * 2 1 4 4 C 1.76199 * 102.99885 * 180.02562 * 3 2 1 5 5 C 1.39210 * 119.71050 * 180.25336 * 4 3 2 6 6 C 1.38266 * 119.09411 * 180.24593 * 5 4 3 7 7 C 1.50692 * 120.74308 * 179.77880 * 6 5 4 8 8 N 1.46898 * 109.47322 * 269.71849 * 7 6 5 9 9 C 1.46900 * 110.99985 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46945 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47076 * 60.00021 * 10 9 8 12 12 O 1.42901 * 109.46988 * 300.00078 * 10 9 8 13 13 C 1.53001 * 109.47020 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47094 * 180.46532 * 13 10 9 15 15 C 1.46897 * 111.00257 * 199.84917 * 14 13 10 16 16 C 1.46903 * 111.00263 * 75.89387 * 14 13 10 17 17 C 1.50698 * 109.47127 * 190.00388 * 16 14 13 18 18 H 1.08006 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00036 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47272 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47351 * 120.00232 * 21 19 17 24 24 H 1.48506 * 109.47157 * 240.00060 * 21 19 17 25 25 C 1.38910 * 118.51079 * 359.50488 * 6 5 4 26 26 C 1.38032 * 119.34026 * 0.25070 * 25 6 5 27 27 N 1.31956 * 120.86133 * 0.02562 * 26 25 6 28 28 H 1.08996 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47175 * 300.00135 * 1 2 3 30 30 H 1.09002 * 109.47258 * 59.99938 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99865 * 2 1 3 32 32 H 1.09002 * 109.47258 * 120.00062 * 2 1 3 33 33 H 1.08001 * 120.44810 * 0.02562 * 5 4 3 34 34 H 1.09001 * 109.47271 * 149.71828 * 7 6 5 35 35 H 1.09003 * 109.47521 * 29.72512 * 7 6 5 36 36 H 1.00903 * 110.99864 * 56.04502 * 8 7 6 37 37 H 1.08998 * 109.47445 * 299.99997 * 9 8 7 38 38 H 1.09001 * 109.47216 * 60.00183 * 9 8 7 39 39 H 0.96701 * 114.00160 * 299.99950 * 12 10 9 40 40 H 1.09001 * 109.47110 * 300.46064 * 13 10 9 41 41 H 1.08994 * 109.47309 * 60.45921 * 13 10 9 42 42 H 1.08998 * 109.47057 * 64.81426 * 15 14 13 43 43 H 1.08998 * 109.47318 * 184.81746 * 15 14 13 44 44 H 1.09005 * 109.46716 * 304.82181 * 15 14 13 45 45 H 1.09007 * 109.46775 * 310.00046 * 16 14 13 46 46 H 1.08996 * 109.47473 * 69.99941 * 16 14 13 47 47 H 0.96999 * 119.99906 * 179.97438 * 20 19 17 48 48 H 1.08005 * 120.33262 * 180.23039 * 25 6 5 49 49 H 1.07999 * 119.56868 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.8854 1.5116 -0.0008 5 6 4.7073 2.6352 0.0044 6 6 6.0794 2.4645 -0.0015 7 6 7.0037 3.6547 -0.0012 8 7 7.3040 4.0418 -1.3860 9 6 8.2052 5.2013 -1.4249 10 6 8.4938 5.5743 -2.8804 11 1 7.5596 5.8232 -3.3838 12 8 9.1115 4.4685 -3.5420 13 6 9.4329 6.7815 -2.9209 14 7 9.7012 7.1466 -4.3183 15 6 10.9212 7.9576 -4.4257 16 6 8.5517 7.8440 -4.9102 17 6 8.7597 7.9837 -6.3962 18 1 9.6564 7.5938 -6.8550 19 6 7.8053 8.6092 -7.1702 20 7 6.7133 9.0835 -6.6115 21 14 8.0635 8.7830 -9.0120 22 1 9.3624 8.1702 -9.3898 23 1 6.9633 8.0941 -9.7333 24 1 8.0698 10.2224 -9.3774 25 6 6.5867 1.1714 -0.0018 26 6 5.7136 0.1023 -0.0016 27 7 4.4081 0.2945 -0.0015 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2789 3.6266 0.0093 34 1 7.9294 3.3957 0.5126 35 1 6.5237 4.4875 0.5130 36 1 6.4566 4.2246 -1.9023 37 1 7.7339 6.0449 -0.9206 38 1 9.1393 4.9525 -0.9211 39 1 9.9496 4.1919 -3.1468 40 1 8.9656 7.6227 -2.4090 41 1 10.3702 6.5296 -2.4248 42 1 11.7820 7.3607 -4.1241 43 1 11.0499 8.2856 -5.4572 44 1 10.8371 8.8283 -3.7753 45 1 7.6434 7.2712 -4.7227 46 1 8.4565 8.8330 -4.4621 47 1 6.0420 9.5239 -7.1559 48 1 7.6537 1.0041 -0.0025 49 1 6.1041 -0.9046 -0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581939536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:25 Heat of formation + Delta-G solvation = -42.492519 kcal Electronic energy + Delta-G solvation = -26076.733892 eV Core-core repulsion = 22356.567458 eV Total energy + Delta-G solvation = -3720.166434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11494 -39.49828 -37.56260 -36.42215 -34.60060 -33.92278 -33.51022 -32.28100 -30.99317 -29.33773 -27.92962 -26.15723 -25.28072 -24.83568 -23.85788 -22.90572 -22.82583 -21.66331 -18.61498 -18.55873 -17.78815 -17.39241 -17.08906 -16.86715 -16.64860 -16.33359 -16.12436 -15.95975 -15.76409 -15.62795 -15.28325 -15.06134 -14.92288 -14.70696 -14.39141 -13.97089 -13.69413 -13.41120 -13.28012 -13.15093 -13.01348 -12.94098 -12.76753 -12.56270 -12.52408 -12.42316 -12.30616 -12.25566 -12.13765 -11.51031 -11.37981 -11.29864 -10.93834 -10.77743 -10.68440 -10.62068 -10.55810 -9.40954 -8.92634 -8.61735 -8.21304 -6.30287 -0.01372 0.15437 0.43360 1.26123 1.38933 1.40630 1.53915 2.39795 2.58729 3.03413 3.11633 3.43292 3.55565 3.65471 3.80259 3.94435 3.99220 4.00630 4.01529 4.10202 4.18249 4.25128 4.37344 4.47673 4.50270 4.54911 4.56858 4.60811 4.63783 4.74541 4.77913 4.79773 4.86579 4.87197 4.87593 5.09324 5.13360 5.18921 5.24843 5.30639 5.31745 5.60640 5.64982 5.94257 6.07339 6.22024 6.35962 6.66710 6.71546 6.86211 7.17884 7.39064 8.89981 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002019 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.407692 B =13862.155204 C =15534.953952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.108 6.108 4 C 0.103 3.897 5 C -0.157 4.157 6 C -0.025 4.025 7 C 0.101 3.899 8 N -0.681 5.681 9 C 0.043 3.957 10 C 0.126 3.874 11 H 0.055 0.945 12 O -0.552 6.552 13 C 0.026 3.974 14 N -0.542 5.542 15 C 0.039 3.961 16 C 0.210 3.790 17 C -0.521 4.521 18 H 0.061 0.939 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.276 1.276 25 C -0.153 4.153 26 C 0.104 3.896 27 N -0.510 5.510 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.337 0.663 37 H 0.042 0.958 38 H 0.101 0.899 39 H 0.378 0.622 40 H 0.027 0.973 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.012 0.988 45 H 0.002 0.998 46 H -0.041 1.041 47 H 0.264 0.736 48 H 0.161 0.839 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -17.800 20.340 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.236 4.236 3 S 0.132 5.868 4 C -0.145 4.145 5 C -0.183 4.183 6 C -0.035 4.035 7 C -0.027 4.027 8 N -0.311 5.311 9 C -0.087 4.087 10 C 0.065 3.935 11 H 0.073 0.927 12 O -0.357 6.357 13 C -0.103 4.103 14 N -0.266 5.266 15 C -0.109 4.109 16 C 0.083 3.917 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.205 1.205 24 H -0.202 1.202 25 C -0.176 4.176 26 C -0.055 4.055 27 N -0.224 5.224 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.154 0.846 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.226 0.774 40 H 0.045 0.955 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.020 0.980 46 H -0.024 1.024 47 H 0.072 0.928 48 H 0.179 0.821 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.495 -18.310 19.598 27.194 hybrid contribution 0.661 1.572 -0.005 1.705 sum -3.833 -16.738 19.592 26.052 Atomic orbital electron populations 1.21594 0.90532 1.04221 1.03199 1.23409 1.00485 0.93482 1.06177 1.85650 0.94599 1.14880 1.91695 1.23094 0.99113 0.91945 1.00369 1.21702 0.93774 0.99089 1.03773 1.20268 0.92851 0.96221 0.94113 1.20954 0.98418 0.93284 0.90083 1.60402 1.19801 1.38477 1.12462 1.22559 0.98549 0.91610 0.95969 1.21642 0.94792 0.85451 0.91603 0.92660 1.86645 1.40644 1.49725 1.58674 1.22796 1.00578 0.97198 0.89689 1.61922 1.04428 1.44260 1.16005 1.22246 0.92361 0.95200 1.01107 1.19369 0.88731 0.89470 0.94099 1.21524 1.05040 1.35938 0.93456 0.92091 1.25926 0.94783 0.95240 1.03968 1.70087 1.09893 1.40024 1.37576 0.85346 0.78454 0.77848 0.79053 1.18755 1.20548 1.20193 1.22278 1.02778 0.91961 1.00595 1.23212 0.87571 1.01079 0.93675 1.68007 1.16256 1.22589 1.15530 0.88770 0.91370 0.91793 0.89737 0.89200 0.84427 0.87659 0.93275 0.84598 0.93937 0.88036 0.77390 0.95507 0.88292 0.89948 0.92821 0.96944 0.97962 1.02365 0.92756 0.82101 0.79739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.92 71.98 0.71 -0.83 16 2 C -0.09 -1.40 5.92 71.98 0.43 -0.97 16 3 S -0.11 -2.25 21.91 -56.49 -1.24 -3.49 16 4 C 0.10 2.39 7.00 84.83 0.59 2.98 16 5 C -0.16 -3.39 9.54 22.51 0.21 -3.18 16 6 C -0.02 -0.47 5.43 -19.70 -0.11 -0.58 16 7 C 0.10 1.68 5.86 85.55 0.50 2.18 16 8 N -0.68 -14.95 6.36 -517.94 -3.29 -18.24 16 9 C 0.04 0.93 5.35 86.30 0.46 1.39 16 10 C 0.13 3.94 3.24 30.60 0.10 4.03 16 11 H 0.06 2.22 6.78 -2.39 -0.02 2.20 16 12 O -0.55 -18.17 13.08 -148.98 -1.95 -20.11 16 13 C 0.03 0.86 4.66 86.30 0.40 1.27 16 14 N -0.54 -23.26 4.56 -927.06 -4.22 -27.48 16 15 C 0.04 1.47 9.37 127.69 1.20 2.66 16 16 C 0.21 11.38 4.55 85.56 0.39 11.77 16 17 C -0.52 -30.44 8.39 25.60 0.21 -30.22 16 18 H 0.06 3.52 7.17 -2.91 -0.02 3.50 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 21 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.15 -2.56 9.81 22.38 0.22 -2.34 16 26 C 0.10 1.84 11.17 84.63 0.95 2.79 16 27 N -0.51 -11.45 9.43 -192.21 -1.81 -13.26 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 36 H 0.34 8.57 8.72 -89.69 -0.78 7.79 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.38 9.01 9.04 -74.06 -0.67 8.34 16 40 H 0.03 0.90 8.00 -2.39 -0.02 0.89 16 41 H 0.10 2.48 7.94 -2.39 -0.02 2.46 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.05 2.25 6.66 -2.39 -0.02 2.23 16 44 H 0.01 0.44 8.13 -2.38 -0.02 0.42 16 45 H 0.00 0.14 6.63 -2.38 -0.02 0.12 16 46 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 47 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 49 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -73.36 416.15 -3.98 -77.34 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.51 Total: 23.51 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 6.73 Total: -8.67 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -9.04 Total: -116.13 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.95 Total: -20.11 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -1.24 Total: -3.49 kcal Total: -73.36 -3.98 -77.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581939536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.852 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds