Wall clock time and date at job start Tue Mar 31 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46670 * 2 1 4 4 N 1.46902 * 109.46815 * 240.01072 * 2 1 3 5 5 C 1.46899 * 111.00443 * 84.99485 * 4 2 1 6 6 C 1.52996 * 109.47048 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47458 * 60.00045 * 6 5 4 8 8 O 1.42903 * 109.47405 * 300.00024 * 6 5 4 9 9 C 1.52994 * 109.47262 * 180.02562 * 6 5 4 10 10 N 1.46901 * 109.47572 * 180.46638 * 9 6 5 11 11 C 1.46902 * 111.00073 * 199.85206 * 10 9 6 12 12 C 1.46899 * 111.00148 * 75.89233 * 10 9 6 13 13 C 1.50701 * 109.47133 * 190.00147 * 12 10 9 14 14 H 1.07998 * 120.00007 * 0.02562 * 13 12 10 15 15 C 1.37870 * 120.00204 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99780 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00304 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47102 * 59.99838 * 17 15 13 19 19 H 1.48502 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46759 * 299.99841 * 17 15 13 21 21 C 1.50693 * 109.47450 * 120.00305 * 2 1 3 22 22 N 1.28332 * 124.90769 * 254.99781 * 21 2 1 23 23 C 1.33487 * 117.84072 * 179.97438 * 22 21 2 24 24 C 1.33875 * 113.17799 * 0.06780 * 23 22 21 25 25 S 1.70752 * 124.90218 * 74.70032 * 21 2 1 26 26 C 1.51714 * 110.88696 * 179.91174 * 24 23 22 27 27 C 1.54307 * 104.81586 * 342.81124 * 26 24 23 28 28 C 1.52614 * 137.15507 * 180.12995 * 23 22 21 29 29 H 1.09007 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47156 * 299.99168 * 1 2 3 31 31 H 1.08998 * 109.47682 * 59.99345 * 1 2 3 32 32 H 1.00902 * 110.99255 * 208.95298 * 4 2 1 33 33 H 1.08991 * 109.47008 * 299.99660 * 5 4 2 34 34 H 1.09002 * 109.46797 * 60.00001 * 5 4 2 35 35 H 0.96695 * 114.00187 * 300.00468 * 8 6 5 36 36 H 1.09007 * 109.47129 * 300.46405 * 9 6 5 37 37 H 1.09000 * 109.47236 * 60.45897 * 9 6 5 38 38 H 1.09003 * 109.47419 * 64.81648 * 11 10 9 39 39 H 1.09001 * 109.46948 * 184.81833 * 11 10 9 40 40 H 1.09007 * 109.46906 * 304.81689 * 11 10 9 41 41 H 1.09005 * 109.47113 * 310.00284 * 12 10 9 42 42 H 1.09000 * 109.46953 * 70.00471 * 12 10 9 43 43 H 0.97003 * 119.99992 * 179.97438 * 16 15 13 44 44 H 1.08996 * 110.37338 * 223.97296 * 26 24 23 45 45 H 1.09000 * 110.46091 * 101.69071 * 26 24 23 46 46 H 1.09002 * 110.96408 * 268.06631 * 27 26 24 47 47 H 1.08998 * 110.97169 * 144.29621 * 27 26 24 48 48 H 1.08991 * 110.32298 * 316.28500 * 28 23 22 49 49 H 1.09002 * 110.31912 * 78.47857 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0823 0.2229 -2.3470 6 6 2.5960 -0.5325 -3.5743 7 1 1.9200 -1.3563 -3.8032 8 8 3.9011 -1.0482 -3.3045 9 6 2.6619 0.4208 -4.7692 10 7 3.1445 -0.3071 -5.9504 11 6 3.6652 0.6203 -6.9638 12 6 2.0883 -1.1605 -6.5108 13 6 2.6793 -2.0689 -7.5580 14 1 3.7341 -2.0176 -7.7844 15 6 1.8737 -2.9661 -8.2265 16 7 0.5893 -3.0288 -7.9505 17 14 2.6063 -4.0925 -9.5241 18 1 3.6549 -4.9432 -8.9062 19 1 1.5386 -4.9552 -10.0907 20 1 3.2077 -3.2740 -10.6075 21 6 2.0324 -0.7104 1.2303 22 7 2.5341 -0.1309 2.2596 23 6 2.9351 -0.8999 3.2743 24 6 2.7460 -2.2064 3.0522 25 16 2.0097 -2.4024 1.4593 26 6 3.2206 -3.0304 4.2343 27 6 4.1310 -2.0788 5.0385 28 6 3.5633 -0.6985 4.6506 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1203 -1.0289 33 1 1.0869 0.6165 -2.5525 34 1 2.7587 1.0465 -2.1182 35 1 4.5562 -0.3693 -3.0925 36 1 1.6680 0.8209 -4.9700 37 1 3.3444 1.2400 -4.5432 38 1 4.5457 1.1296 -6.5721 39 1 3.9365 0.0633 -7.8606 40 1 2.8997 1.3560 -7.2106 41 1 1.6468 -1.7615 -5.7157 42 1 1.3187 -0.5358 -6.9641 43 1 0.0224 -3.6598 -8.4211 44 1 3.7863 -3.8964 3.8906 45 1 2.3733 -3.3483 4.8419 46 1 5.1704 -2.1754 4.7245 47 1 4.0305 -2.2550 6.1094 48 1 4.3643 0.0387 4.5969 49 1 2.8067 -0.3848 5.3698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584346467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:19 Heat of formation + Delta-G solvation = 2.926599 kcal Electronic energy + Delta-G solvation = -26767.716812 eV Core-core repulsion = 23049.519899 eV Total energy + Delta-G solvation = -3718.196913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56656 -38.47918 -37.17685 -35.85135 -35.04710 -32.45474 -31.41647 -29.04542 -28.80601 -28.12111 -27.25034 -25.81841 -24.44205 -23.27201 -22.11535 -21.49445 -20.86745 -20.00094 -19.15973 -18.16781 -16.69182 -16.33238 -16.17842 -15.99125 -15.28707 -14.94991 -14.75916 -14.50248 -14.34813 -14.20451 -13.80349 -13.52340 -13.32339 -13.29402 -13.16004 -12.77092 -12.53273 -12.51275 -12.05046 -11.97417 -11.88082 -11.62970 -11.51351 -11.40126 -11.37162 -11.19089 -11.12256 -10.86455 -10.70381 -10.61376 -10.31940 -9.74826 -9.71103 -9.61601 -9.34560 -9.11629 -8.76651 -8.62282 -8.38033 -7.17785 -5.97725 -3.98194 0.52516 1.04769 1.69265 2.49769 3.31036 3.37366 3.41018 3.44676 3.96890 4.15484 4.29734 4.46874 4.54458 4.63774 4.75117 4.87417 5.03161 5.09199 5.10351 5.22506 5.26447 5.27480 5.35124 5.36186 5.39586 5.45670 5.49404 5.59485 5.63713 5.68656 5.70544 5.72290 5.79465 5.92944 6.04628 6.05685 6.14834 6.33706 6.52912 6.73725 6.80105 7.17939 7.32054 7.35432 7.53937 7.83738 8.07662 8.14544 8.24760 8.59606 9.08575 9.65331 11.13258 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017144 B = 0.002107 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.835310 B =13288.569097 C =13830.671343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.161 3.839 3 H 0.073 0.927 4 N -0.675 5.675 5 C 0.030 3.970 6 C 0.117 3.883 7 H 0.113 0.887 8 O -0.540 6.540 9 C 0.026 3.974 10 N -0.531 5.531 11 C 0.038 3.962 12 C 0.193 3.807 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.046 3.954 22 N -0.467 5.467 23 C 0.039 3.961 24 C -0.264 4.264 25 S 0.190 5.810 26 C -0.038 4.038 27 C -0.116 4.116 28 C -0.039 4.039 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.351 0.649 33 H 0.083 0.917 34 H 0.033 0.967 35 H 0.359 0.641 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.007 0.993 41 H 0.032 0.968 42 H -0.012 1.012 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 5.841 26.223 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 H 0.091 0.909 4 N -0.310 5.310 5 C -0.100 4.100 6 C 0.057 3.943 7 H 0.130 0.870 8 O -0.343 6.343 9 C -0.103 4.103 10 N -0.255 5.255 11 C -0.111 4.111 12 C 0.068 3.932 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.233 4.233 22 N -0.181 5.181 23 C -0.092 4.092 24 C -0.385 4.385 25 S 0.448 5.552 26 C -0.078 4.078 27 C -0.155 4.155 28 C -0.079 4.079 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.204 0.796 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.099 0.901 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.389 4.343 25.348 25.828 hybrid contribution 0.853 1.468 -0.013 1.698 sum 3.242 5.811 25.335 26.195 Atomic orbital electron populations 1.21845 0.92325 1.03253 1.02201 1.20059 0.96413 0.95432 0.83296 0.90941 1.60581 1.34725 1.32670 1.02983 1.22768 1.01807 0.93819 0.91585 1.21972 0.85074 0.97275 0.89989 0.86978 1.86706 1.19185 1.36496 1.91875 1.22653 0.98536 0.95550 0.93604 1.62020 1.37832 1.20051 1.05584 1.22227 0.97307 0.94754 0.96804 1.19766 0.87745 0.91100 0.94605 1.21111 0.95179 1.18745 1.19295 0.91964 1.24984 0.94836 0.97389 0.97466 1.69949 1.04321 1.37177 1.42458 0.86563 0.78630 0.80635 0.81590 1.20126 1.21405 1.20381 1.26802 1.02700 0.95018 0.98777 1.65358 1.12841 1.39756 1.00099 1.21592 1.02528 0.88484 0.96610 1.27269 1.09571 1.00709 1.00957 1.84145 1.55393 1.07466 1.08187 1.20641 0.99087 0.97158 0.90913 1.22363 0.99530 0.93286 1.00367 1.20832 0.99606 0.98419 0.89005 0.91389 0.92179 0.91081 0.82874 0.89827 0.94922 0.79628 0.94833 0.92344 0.93829 0.90453 0.97419 0.94998 0.99424 0.92937 0.90278 0.89798 0.90320 0.89539 0.90138 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.40 37.16 0.35 -1.06 16 2 C 0.16 1.82 3.12 -68.87 -0.22 1.60 16 3 H 0.07 0.82 7.80 -51.93 -0.40 0.42 16 4 N -0.68 -8.35 6.12 -107.96 -0.66 -9.01 16 5 C 0.03 0.37 5.19 -3.83 -0.02 0.35 16 6 C 0.12 1.87 3.30 -26.74 -0.09 1.78 16 7 H 0.11 2.19 6.78 -51.93 -0.35 1.84 16 8 O -0.54 -8.87 12.55 -35.23 -0.44 -9.31 16 9 C 0.03 0.45 4.65 -3.83 -0.02 0.43 16 10 N -0.53 -11.47 4.56 -244.36 -1.11 -12.59 16 11 C 0.04 0.74 9.37 60.07 0.56 1.30 16 12 C 0.19 5.07 4.55 -4.98 -0.02 5.04 16 13 C -0.50 -14.44 8.39 -34.44 -0.29 -14.72 16 14 H 0.06 1.77 7.17 -52.49 -0.38 1.39 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.05 0.56 5.96 -13.74 -0.08 0.48 16 22 N -0.47 -6.08 10.54 -7.24 -0.08 -6.16 16 23 C 0.04 0.44 7.70 -82.45 -0.63 -0.20 16 24 C -0.26 -2.74 7.42 -35.34 -0.26 -3.00 16 25 S 0.19 2.13 22.88 -107.50 -2.46 -0.33 16 26 C -0.04 -0.27 6.80 -26.70 -0.18 -0.45 16 27 C -0.12 -0.63 7.12 -25.42 -0.18 -0.81 16 28 C -0.04 -0.29 6.81 -26.30 -0.18 -0.47 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 32 H 0.35 4.53 7.65 -39.29 -0.30 4.23 16 33 H 0.08 0.99 7.43 -51.93 -0.39 0.61 16 34 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.36 4.50 9.04 45.56 0.41 4.91 16 36 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 37 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.64 6.67 -51.93 -0.35 1.30 16 40 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 41 H 0.03 0.90 6.63 -51.93 -0.34 0.55 16 42 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -33.00 404.49 -11.82 -44.82 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.52 Total: 3.99 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.36 Total: -8.25 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.11 Total: -54.04 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.44 Total: -9.31 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.46 Total: -0.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.00 -11.82 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584346467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.747 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds