Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46670 * 2 1 4 4 N 1.46902 * 109.46815 * 240.01072 * 2 1 3 5 5 C 1.46899 * 111.00443 * 84.99485 * 4 2 1 6 6 C 1.52996 * 109.47048 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47458 * 60.00045 * 6 5 4 8 8 O 1.42903 * 109.47405 * 300.00024 * 6 5 4 9 9 C 1.52994 * 109.47262 * 180.02562 * 6 5 4 10 10 N 1.46901 * 109.47572 * 180.46638 * 9 6 5 11 11 C 1.46902 * 111.00073 * 199.85206 * 10 9 6 12 12 C 1.46899 * 111.00148 * 75.89233 * 10 9 6 13 13 C 1.50701 * 109.47133 * 190.00147 * 12 10 9 14 14 H 1.07998 * 120.00007 * 0.02562 * 13 12 10 15 15 C 1.37870 * 120.00204 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99780 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00304 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47102 * 59.99838 * 17 15 13 19 19 H 1.48502 * 109.46998 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46759 * 299.99841 * 17 15 13 21 21 C 1.50693 * 109.47450 * 120.00305 * 2 1 3 22 22 N 1.28332 * 124.90769 * 254.99781 * 21 2 1 23 23 C 1.33487 * 117.84072 * 179.97438 * 22 21 2 24 24 C 1.33875 * 113.17799 * 0.06780 * 23 22 21 25 25 S 1.70752 * 124.90218 * 74.70032 * 21 2 1 26 26 C 1.51714 * 110.88696 * 179.91174 * 24 23 22 27 27 C 1.54307 * 104.81586 * 342.81124 * 26 24 23 28 28 C 1.52614 * 137.15507 * 180.12995 * 23 22 21 29 29 H 1.09007 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47156 * 299.99168 * 1 2 3 31 31 H 1.08998 * 109.47682 * 59.99345 * 1 2 3 32 32 H 1.00902 * 110.99255 * 208.95298 * 4 2 1 33 33 H 1.08991 * 109.47008 * 299.99660 * 5 4 2 34 34 H 1.09002 * 109.46797 * 60.00001 * 5 4 2 35 35 H 0.96695 * 114.00187 * 300.00468 * 8 6 5 36 36 H 1.09007 * 109.47129 * 300.46405 * 9 6 5 37 37 H 1.09000 * 109.47236 * 60.45897 * 9 6 5 38 38 H 1.09003 * 109.47419 * 64.81648 * 11 10 9 39 39 H 1.09001 * 109.46948 * 184.81833 * 11 10 9 40 40 H 1.09007 * 109.46906 * 304.81689 * 11 10 9 41 41 H 1.09005 * 109.47113 * 310.00284 * 12 10 9 42 42 H 1.09000 * 109.46953 * 70.00471 * 12 10 9 43 43 H 0.97003 * 119.99992 * 179.97438 * 16 15 13 44 44 H 1.08996 * 110.37338 * 223.97296 * 26 24 23 45 45 H 1.09000 * 110.46091 * 101.69071 * 26 24 23 46 46 H 1.09002 * 110.96408 * 268.06631 * 27 26 24 47 47 H 1.08998 * 110.97169 * 144.29621 * 27 26 24 48 48 H 1.08991 * 110.32298 * 316.28500 * 28 23 22 49 49 H 1.09002 * 110.31912 * 78.47857 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1996 5 6 2.0823 0.2229 -2.3470 6 6 2.5960 -0.5325 -3.5743 7 1 1.9200 -1.3563 -3.8032 8 8 3.9011 -1.0482 -3.3045 9 6 2.6619 0.4208 -4.7692 10 7 3.1445 -0.3071 -5.9504 11 6 3.6652 0.6203 -6.9638 12 6 2.0883 -1.1605 -6.5108 13 6 2.6793 -2.0689 -7.5580 14 1 3.7341 -2.0176 -7.7844 15 6 1.8737 -2.9661 -8.2265 16 7 0.5893 -3.0288 -7.9505 17 14 2.6063 -4.0925 -9.5241 18 1 3.6549 -4.9432 -8.9062 19 1 1.5386 -4.9552 -10.0907 20 1 3.2077 -3.2740 -10.6075 21 6 2.0324 -0.7104 1.2303 22 7 2.5341 -0.1309 2.2596 23 6 2.9351 -0.8999 3.2743 24 6 2.7460 -2.2064 3.0522 25 16 2.0097 -2.4024 1.4593 26 6 3.2206 -3.0304 4.2343 27 6 4.1310 -2.0788 5.0385 28 6 3.5633 -0.6985 4.6506 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1203 -1.0289 33 1 1.0869 0.6165 -2.5525 34 1 2.7587 1.0465 -2.1182 35 1 4.5562 -0.3693 -3.0925 36 1 1.6680 0.8209 -4.9700 37 1 3.3444 1.2400 -4.5432 38 1 4.5457 1.1296 -6.5721 39 1 3.9365 0.0633 -7.8606 40 1 2.8997 1.3560 -7.2106 41 1 1.6468 -1.7615 -5.7157 42 1 1.3187 -0.5358 -6.9641 43 1 0.0224 -3.6598 -8.4211 44 1 3.7863 -3.8964 3.8906 45 1 2.3733 -3.3483 4.8419 46 1 5.1704 -2.1754 4.7245 47 1 4.0305 -2.2550 6.1094 48 1 4.3643 0.0387 4.5969 49 1 2.8067 -0.3848 5.3698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584346467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = -22.356518 kcal Electronic energy + Delta-G solvation = -26768.813171 eV Core-core repulsion = 23049.519899 eV Total energy + Delta-G solvation = -3719.293271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34534 -39.71081 -38.24951 -37.11907 -36.12768 -34.59102 -32.47919 -30.35028 -29.41445 -29.22994 -28.83142 -27.06882 -25.70946 -24.81003 -22.98122 -22.67284 -21.82537 -21.42968 -19.99127 -18.97044 -18.59198 -17.59754 -17.28796 -16.82629 -16.62956 -16.47643 -16.03764 -15.73733 -15.56900 -15.24226 -14.97848 -14.92178 -14.36047 -14.19116 -14.05520 -13.91977 -13.73470 -13.56244 -13.43973 -13.15455 -12.91963 -12.87960 -12.72077 -12.57887 -12.51067 -12.34614 -12.26925 -12.14043 -12.12444 -12.03404 -11.86376 -11.51377 -11.33128 -10.81122 -10.59389 -10.58658 -10.20229 -9.59371 -9.54034 -8.93292 -8.18712 -6.28025 -0.31238 0.23080 0.85427 1.40435 1.44376 1.51980 1.65659 2.41061 2.48634 2.99249 3.13645 3.40045 3.53828 3.58140 3.69287 3.94635 4.03273 4.11892 4.12832 4.20339 4.24185 4.31999 4.44189 4.50675 4.56465 4.61880 4.62796 4.71803 4.73156 4.78702 4.80577 4.82720 4.85989 4.93966 5.09507 5.09799 5.13945 5.20224 5.23477 5.26403 5.28184 5.32257 5.65868 5.84042 6.08560 6.18033 6.36424 6.66203 6.68178 6.87512 7.02731 7.40938 8.92102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017144 B = 0.002107 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.835310 B =13288.569097 C =13830.671343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 H 0.076 0.924 4 N -0.684 5.684 5 C 0.044 3.956 6 C 0.127 3.873 7 H 0.067 0.933 8 O -0.559 6.559 9 C 0.027 3.973 10 N -0.542 5.542 11 C 0.039 3.961 12 C 0.210 3.790 13 C -0.523 4.523 14 H 0.060 0.940 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.036 3.964 22 N -0.488 5.488 23 C 0.012 3.988 24 C -0.263 4.263 25 S 0.170 5.830 26 C -0.041 4.041 27 C -0.106 4.106 28 C -0.039 4.039 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.347 0.653 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.378 0.622 36 H 0.031 0.969 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.012 0.988 41 H 0.004 0.996 42 H -0.041 1.041 43 H 0.264 0.736 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.082 0.918 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 6.306 27.613 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.054 3.946 3 H 0.093 0.907 4 N -0.318 5.318 5 C -0.086 4.086 6 C 0.067 3.933 7 H 0.085 0.915 8 O -0.364 6.364 9 C -0.103 4.103 10 N -0.266 5.266 11 C -0.109 4.109 12 C 0.084 3.916 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.243 4.243 22 N -0.203 5.203 23 C -0.118 4.118 24 C -0.384 4.384 25 S 0.428 5.572 26 C -0.081 4.081 27 C -0.145 4.145 28 C -0.079 4.079 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.167 0.833 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.225 0.775 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.022 0.978 42 H -0.023 1.023 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.117 0.883 46 H 0.100 0.900 47 H 0.133 0.867 48 H 0.101 0.899 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.951 4.841 26.753 27.473 hybrid contribution 0.398 1.351 -0.371 1.457 sum 4.349 6.193 26.382 27.446 Atomic orbital electron populations 1.21822 0.91756 1.02903 1.02798 1.20031 0.96751 0.95227 0.82634 0.90674 1.60552 1.34607 1.33120 1.03492 1.22574 1.02443 0.93689 0.89915 1.21685 0.84521 0.95781 0.91349 0.91470 1.86656 1.19771 1.37971 1.91987 1.22773 0.99211 0.96299 0.91969 1.61928 1.36210 1.21453 1.07037 1.22244 0.98718 0.94185 0.95769 1.19363 0.88114 0.90966 0.93141 1.21448 0.95202 1.19437 1.20063 0.92147 1.25919 0.95212 0.98975 0.99740 1.70081 1.05697 1.38004 1.43645 0.85457 0.77927 0.78517 0.78841 1.19573 1.20760 1.19098 1.26870 1.03171 0.95241 0.98989 1.65376 1.13354 1.40737 1.00836 1.22289 1.03008 0.88802 0.97682 1.27757 1.08468 1.01354 1.00819 1.84149 1.55977 1.07440 1.09662 1.20862 0.99998 0.97353 0.89863 1.22402 0.99096 0.91219 1.01755 1.21014 0.99825 0.99874 0.87173 0.92213 0.91435 0.90564 0.83306 0.89290 0.92492 0.77480 0.95113 0.88636 0.90114 0.92726 0.96920 0.97807 1.02337 0.92751 0.89501 0.88337 0.90009 0.86700 0.89917 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 71.98 0.68 -2.06 16 2 C 0.17 3.71 3.12 44.17 0.14 3.85 16 3 H 0.08 1.63 7.80 -2.39 -0.02 1.61 16 4 N -0.68 -16.89 6.12 -495.48 -3.03 -19.92 16 5 C 0.04 1.04 5.19 86.30 0.45 1.48 16 6 C 0.13 4.08 3.30 30.59 0.10 4.18 16 7 H 0.07 2.79 6.78 -2.39 -0.02 2.77 16 8 O -0.56 -18.10 12.55 -148.98 -1.87 -19.97 16 9 C 0.03 0.89 4.65 86.30 0.40 1.29 16 10 N -0.54 -23.48 4.56 -927.02 -4.22 -27.71 16 11 C 0.04 1.49 9.37 127.69 1.20 2.68 16 12 C 0.21 11.49 4.55 85.56 0.39 11.87 16 13 C -0.52 -30.60 8.39 25.60 0.21 -30.39 16 14 H 0.06 3.48 7.17 -2.91 -0.02 3.46 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 16 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 17 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 C 0.04 0.88 5.96 88.62 0.53 1.41 16 22 N -0.49 -12.62 10.54 -176.80 -1.86 -14.48 16 23 C 0.01 0.27 7.70 41.93 0.32 0.59 16 24 C -0.26 -5.25 7.42 25.02 0.19 -5.06 16 25 S 0.17 3.87 22.88 -56.49 -1.29 2.58 16 26 C -0.04 -0.49 6.80 30.62 0.21 -0.28 16 27 C -0.11 -0.86 7.12 31.44 0.22 -0.64 16 28 C -0.04 -0.52 6.81 30.87 0.21 -0.31 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.45 7.45 -2.39 -0.02 1.44 16 32 H 0.35 9.02 7.65 -89.69 -0.69 8.33 16 33 H 0.09 2.04 7.43 -2.39 -0.02 2.02 16 34 H 0.06 1.11 8.06 -2.39 -0.02 1.09 16 35 H 0.38 8.81 9.04 -74.06 -0.67 8.14 16 36 H 0.03 1.06 8.00 -2.38 -0.02 1.04 16 37 H 0.10 2.50 7.94 -2.39 -0.02 2.48 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.05 2.31 6.67 -2.39 -0.02 2.29 16 40 H 0.01 0.45 8.13 -2.38 -0.02 0.44 16 41 H 0.00 0.23 6.63 -2.38 -0.02 0.21 16 42 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.49 404.49 -4.67 -78.16 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.40 Total: 21.97 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.71 Total: -10.94 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -8.84 Total: -119.33 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.87 Total: -19.97 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.29 Total: 2.58 kcal Total: -73.49 -4.67 -78.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584346467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.800 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds