Wall clock time and date at job start Tue Mar 31 2020 22:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47175 * 2 1 4 4 N 1.46902 * 109.47190 * 120.00618 * 2 1 3 5 5 C 1.46904 * 110.99534 * 274.99858 * 4 2 1 6 6 C 1.53000 * 109.47085 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47253 * 305.00344 * 6 5 4 8 8 O 1.42900 * 109.47194 * 64.99751 * 6 5 4 9 9 C 1.52998 * 109.47107 * 184.99848 * 6 5 4 10 10 N 1.46899 * 109.46858 * 175.04575 * 9 6 5 11 11 C 1.46903 * 110.99991 * 163.94840 * 10 9 6 12 12 C 1.46902 * 111.00138 * 287.89426 * 10 9 6 13 13 C 1.50702 * 109.47206 * 170.00004 * 12 10 9 14 14 H 1.07990 * 119.99891 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99588 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00136 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.46844 * 90.00277 * 17 15 13 19 19 H 1.48497 * 109.47088 * 210.00471 * 17 15 13 20 20 H 1.48503 * 109.46723 * 330.00198 * 17 15 13 21 21 C 1.50702 * 109.46798 * 239.99884 * 2 1 3 22 22 N 1.28333 * 124.90932 * 284.69885 * 21 2 1 23 23 C 1.33484 * 117.84235 * 179.75945 * 22 21 2 24 24 C 1.33879 * 113.17838 * 0.55159 * 23 22 21 25 25 S 1.70748 * 124.90204 * 105.00168 * 21 2 1 26 26 C 1.51707 * 110.89106 * 179.65520 * 24 23 22 27 27 C 1.54295 * 104.81176 * 342.77844 * 26 24 23 28 28 C 1.52616 * 137.15884 * 180.20649 * 23 22 21 29 29 H 1.09007 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47089 * 299.99658 * 1 2 3 31 31 H 1.08999 * 109.47450 * 59.99825 * 1 2 3 32 32 H 1.00901 * 111.00190 * 151.04523 * 4 2 1 33 33 H 1.08996 * 109.47355 * 59.99871 * 5 4 2 34 34 H 1.09001 * 109.46826 * 299.99768 * 5 4 2 35 35 H 0.96698 * 114.00266 * 60.00042 * 8 6 5 36 36 H 1.08997 * 109.47560 * 55.04389 * 9 6 5 37 37 H 1.08998 * 109.46907 * 295.04026 * 9 6 5 38 38 H 1.08998 * 109.47439 * 189.27288 * 11 10 9 39 39 H 1.08994 * 109.47470 * 69.26701 * 11 10 9 40 40 H 1.09004 * 109.46549 * 309.26905 * 11 10 9 41 41 H 1.08997 * 109.47475 * 290.00611 * 12 10 9 42 42 H 1.09000 * 109.46537 * 50.00068 * 12 10 9 43 43 H 0.97003 * 119.99947 * 179.97438 * 16 15 13 44 44 H 1.09008 * 110.37226 * 101.60948 * 26 24 23 45 45 H 1.09005 * 110.37116 * 223.93919 * 26 24 23 46 46 H 1.09004 * 110.97135 * 268.07559 * 27 26 24 47 47 H 1.09002 * 111.00834 * 144.31962 * 27 26 24 48 48 H 1.09002 * 110.31564 * 316.64522 * 28 23 22 49 49 H 1.09001 * 110.31798 * 78.84086 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9710 -1.4085 3.7500 8 8 3.9446 -0.9486 3.3477 9 6 2.5440 0.3850 4.7969 10 7 2.9243 -0.3741 5.9957 11 6 3.2553 0.5278 7.1070 12 6 1.8649 -1.3163 6.3803 13 6 2.3805 -2.2420 7.4519 14 1 3.3937 -2.1402 7.8116 15 6 1.5583 -3.2180 7.9738 16 7 0.3243 -3.3415 7.5361 17 14 2.1972 -4.3650 9.3026 18 1 1.9281 -3.7739 10.6380 19 1 1.5116 -5.6778 9.1950 20 1 3.6600 -4.5550 9.1310 21 6 2.0322 -0.7105 -1.2305 22 7 2.0252 -1.9828 -1.3982 23 6 2.5015 -2.4625 -2.5492 24 6 2.9398 -1.5063 -3.3775 25 16 2.6996 0.0608 -2.5999 26 6 3.4761 -2.1079 -4.6627 27 6 3.7105 -3.5970 -4.3334 28 6 2.6954 -3.8309 -3.1964 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9173 -1.1206 1.0286 33 1 1.0871 0.6162 2.5525 34 1 2.7589 1.0460 2.1182 35 1 4.5585 -0.2197 3.1837 36 1 1.5323 0.7721 4.9178 37 1 3.2365 1.2152 4.6578 38 1 3.6889 -0.0474 7.9250 39 1 2.3496 1.0257 7.4530 40 1 3.9732 1.2744 6.7674 41 1 1.0066 -0.7625 6.7606 42 1 1.5641 -1.8997 5.5100 43 1 -0.2540 -4.0285 7.9030 44 1 2.7435 -2.0072 -5.4635 45 1 4.4143 -1.6291 -4.9433 46 1 4.7303 -3.7640 -3.9864 47 1 3.4850 -4.2276 -5.1935 48 1 3.0960 -4.5392 -2.4712 49 1 1.7512 -4.1954 -3.6011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584346468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:22 Heat of formation + Delta-G solvation = 5.067337 kcal Electronic energy + Delta-G solvation = -26857.767764 eV Core-core repulsion = 23139.663680 eV Total energy + Delta-G solvation = -3718.104084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59460 -38.42699 -37.18312 -35.76310 -34.97553 -32.42881 -31.39130 -28.96331 -28.79246 -28.07731 -27.24131 -25.70062 -24.66286 -23.31961 -21.98290 -21.44051 -21.03919 -19.99997 -18.82331 -18.25595 -16.65519 -16.32363 -16.16616 -15.92335 -15.25008 -14.98551 -14.72086 -14.46705 -14.35713 -14.24963 -13.75842 -13.54998 -13.31581 -13.17836 -13.16274 -12.84996 -12.50918 -12.42738 -11.99433 -11.91755 -11.84680 -11.61118 -11.45951 -11.41515 -11.34711 -11.25112 -11.10771 -10.89120 -10.64825 -10.61082 -10.29394 -9.70712 -9.67746 -9.54495 -9.43151 -9.07659 -8.78885 -8.44975 -8.35319 -7.15521 -5.94940 -3.95315 0.49062 0.94677 1.53603 2.56221 3.37296 3.43402 3.44171 3.48678 4.00181 4.15519 4.27955 4.49589 4.56699 4.62710 4.76717 4.85546 4.97536 5.05701 5.14392 5.20658 5.27404 5.30481 5.39199 5.39625 5.43484 5.48345 5.50704 5.61650 5.68520 5.70927 5.73912 5.76702 5.84462 5.96249 6.07491 6.11328 6.19625 6.38319 6.59000 6.74363 6.92509 7.33799 7.37315 7.37608 7.60088 7.86663 8.10364 8.17465 8.26938 8.62220 9.11632 9.68198 11.16166 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.002211 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.383777 B =12660.914089 C =13592.237295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.060 0.940 4 N -0.662 5.662 5 C 0.028 3.972 6 C 0.115 3.885 7 H 0.116 0.884 8 O -0.542 6.542 9 C 0.028 3.972 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.057 3.943 22 N -0.437 5.437 23 C 0.049 3.951 24 C -0.253 4.253 25 S 0.122 5.878 26 C -0.037 4.037 27 C -0.116 4.116 28 C -0.042 4.042 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.354 0.646 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.358 0.642 36 H 0.032 0.968 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.011 0.989 40 H 0.041 0.959 41 H -0.012 1.012 42 H 0.034 0.966 43 H 0.260 0.740 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 8.803 -26.478 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.078 0.922 4 N -0.296 5.296 5 C -0.102 4.102 6 C 0.055 3.945 7 H 0.134 0.866 8 O -0.344 6.344 9 C -0.102 4.102 10 N -0.256 5.256 11 C -0.107 4.107 12 C 0.067 3.933 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.209 1.209 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.224 4.224 22 N -0.149 5.149 23 C -0.082 4.082 24 C -0.374 4.374 25 S 0.379 5.621 26 C -0.077 4.077 27 C -0.155 4.155 28 C -0.082 4.082 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.174 0.826 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.203 0.797 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.006 0.994 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.115 8.326 -26.122 27.723 hybrid contribution 0.346 0.189 0.528 0.659 sum 4.461 8.515 -25.593 27.339 Atomic orbital electron populations 1.21807 0.92272 1.03771 1.01607 1.20133 0.96879 0.93579 0.84063 0.92182 1.60413 1.35058 1.31839 1.02263 1.22817 1.01524 0.93802 0.92029 1.22020 0.83786 0.98741 0.89954 0.86637 1.86726 1.18085 1.35986 1.93626 1.22660 0.98705 0.95572 0.93278 1.62054 1.44259 1.16421 1.02890 1.22183 0.98244 0.95135 0.95175 1.19800 0.87127 0.90073 0.96325 1.21141 0.98691 1.14787 1.19610 0.91957 1.24985 0.94892 0.97575 0.97239 1.69957 1.06502 1.34259 1.43162 0.86511 0.79087 0.80167 0.81744 1.20861 1.21262 1.19771 1.26915 1.03118 0.91655 1.00690 1.65298 1.16561 1.12179 1.20843 1.21738 0.99615 0.98149 0.88685 1.27032 1.10816 0.95201 1.04365 1.83694 1.58155 1.08043 1.12162 1.20649 1.00745 0.94573 0.91690 1.22365 0.99807 0.95035 0.98301 1.20878 1.00170 0.90878 0.96269 0.90786 0.91318 0.92626 0.82581 0.89988 0.95296 0.79749 0.95035 0.92292 0.90968 0.97016 0.94022 0.99384 0.94840 0.92994 0.89838 0.90451 0.90259 0.89474 0.89648 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.40 37.16 0.35 -1.13 16 2 C 0.17 1.91 3.11 -68.86 -0.21 1.69 16 3 H 0.06 0.58 7.80 -51.93 -0.40 0.18 16 4 N -0.66 -9.05 6.27 -107.95 -0.68 -9.72 16 5 C 0.03 0.37 5.16 -3.82 -0.02 0.35 16 6 C 0.11 1.93 3.26 -26.73 -0.09 1.84 16 7 H 0.12 2.42 6.46 -51.93 -0.34 2.09 16 8 O -0.54 -9.24 12.80 -35.23 -0.45 -9.69 16 9 C 0.03 0.48 4.61 -3.83 -0.02 0.47 16 10 N -0.53 -11.73 4.66 -244.37 -1.14 -12.87 16 11 C 0.04 0.82 9.32 60.07 0.56 1.38 16 12 C 0.19 5.13 4.57 -4.97 -0.02 5.11 16 13 C -0.50 -14.65 8.58 -34.44 -0.30 -14.94 16 14 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 17 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.06 0.69 5.88 -13.74 -0.08 0.61 16 22 N -0.44 -6.10 10.49 -7.23 -0.08 -6.18 16 23 C 0.05 0.57 7.70 -82.45 -0.63 -0.06 16 24 C -0.25 -2.53 7.42 -35.34 -0.26 -2.79 16 25 S 0.12 1.18 23.18 -107.50 -2.49 -1.31 16 26 C -0.04 -0.24 6.80 -26.71 -0.18 -0.42 16 27 C -0.12 -0.67 7.12 -25.42 -0.18 -0.85 16 28 C -0.04 -0.36 6.81 -26.30 -0.18 -0.53 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.35 5.18 7.91 -39.29 -0.31 4.87 16 33 H 0.08 1.03 7.44 -51.93 -0.39 0.64 16 34 H 0.03 0.32 8.06 -51.93 -0.42 -0.10 16 35 H 0.36 4.55 9.05 45.56 0.41 4.96 16 36 H 0.03 0.55 8.05 -51.93 -0.42 0.14 16 37 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 38 H 0.07 1.52 7.02 -51.93 -0.36 1.15 16 39 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 40 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 41 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 42 H 0.03 0.96 6.34 -51.93 -0.33 0.63 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -34.08 404.69 -11.87 -45.94 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.48 Total: 4.94 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.36 Total: -7.81 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -1.15 Total: -55.50 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.45 Total: -9.69 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.08 -11.87 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584346468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.012 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds