Wall clock time and date at job start Tue Mar 31 2020 22:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47175 * 2 1 4 4 N 1.46902 * 109.47190 * 120.00618 * 2 1 3 5 5 C 1.46904 * 110.99534 * 274.99858 * 4 2 1 6 6 C 1.53000 * 109.47085 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.47253 * 305.00344 * 6 5 4 8 8 O 1.42900 * 109.47194 * 64.99751 * 6 5 4 9 9 C 1.52998 * 109.47107 * 184.99848 * 6 5 4 10 10 N 1.46899 * 109.46858 * 175.04575 * 9 6 5 11 11 C 1.46903 * 110.99991 * 163.94840 * 10 9 6 12 12 C 1.46902 * 111.00138 * 287.89426 * 10 9 6 13 13 C 1.50702 * 109.47206 * 170.00004 * 12 10 9 14 14 H 1.07990 * 119.99891 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99588 * 179.97438 * 13 12 10 16 16 N 1.31512 * 120.00136 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99737 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.46844 * 90.00277 * 17 15 13 19 19 H 1.48497 * 109.47088 * 210.00471 * 17 15 13 20 20 H 1.48503 * 109.46723 * 330.00198 * 17 15 13 21 21 C 1.50702 * 109.46798 * 239.99884 * 2 1 3 22 22 N 1.28333 * 124.90932 * 284.69885 * 21 2 1 23 23 C 1.33484 * 117.84235 * 179.75945 * 22 21 2 24 24 C 1.33879 * 113.17838 * 0.55159 * 23 22 21 25 25 S 1.70748 * 124.90204 * 105.00168 * 21 2 1 26 26 C 1.51707 * 110.89106 * 179.65520 * 24 23 22 27 27 C 1.54295 * 104.81176 * 342.77844 * 26 24 23 28 28 C 1.52616 * 137.15884 * 180.20649 * 23 22 21 29 29 H 1.09007 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47089 * 299.99658 * 1 2 3 31 31 H 1.08999 * 109.47450 * 59.99825 * 1 2 3 32 32 H 1.00901 * 111.00190 * 151.04523 * 4 2 1 33 33 H 1.08996 * 109.47355 * 59.99871 * 5 4 2 34 34 H 1.09001 * 109.46826 * 299.99768 * 5 4 2 35 35 H 0.96698 * 114.00266 * 60.00042 * 8 6 5 36 36 H 1.08997 * 109.47560 * 55.04389 * 9 6 5 37 37 H 1.08998 * 109.46907 * 295.04026 * 9 6 5 38 38 H 1.08998 * 109.47439 * 189.27288 * 11 10 9 39 39 H 1.08994 * 109.47470 * 69.26701 * 11 10 9 40 40 H 1.09004 * 109.46549 * 309.26905 * 11 10 9 41 41 H 1.08997 * 109.47475 * 290.00611 * 12 10 9 42 42 H 1.09000 * 109.46537 * 50.00068 * 12 10 9 43 43 H 0.97003 * 119.99947 * 179.97438 * 16 15 13 44 44 H 1.09008 * 110.37226 * 101.60948 * 26 24 23 45 45 H 1.09005 * 110.37116 * 223.93919 * 26 24 23 46 46 H 1.09004 * 110.97135 * 268.07559 * 27 26 24 47 47 H 1.09002 * 111.00834 * 144.31962 * 27 26 24 48 48 H 1.09002 * 110.31564 * 316.64522 * 28 23 22 49 49 H 1.09001 * 110.31798 * 78.84086 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 1 1.9710 -1.4085 3.7500 8 8 3.9446 -0.9486 3.3477 9 6 2.5440 0.3850 4.7969 10 7 2.9243 -0.3741 5.9957 11 6 3.2553 0.5278 7.1070 12 6 1.8649 -1.3163 6.3803 13 6 2.3805 -2.2420 7.4519 14 1 3.3937 -2.1402 7.8116 15 6 1.5583 -3.2180 7.9738 16 7 0.3243 -3.3415 7.5361 17 14 2.1972 -4.3650 9.3026 18 1 1.9281 -3.7739 10.6380 19 1 1.5116 -5.6778 9.1950 20 1 3.6600 -4.5550 9.1310 21 6 2.0322 -0.7105 -1.2305 22 7 2.0252 -1.9828 -1.3982 23 6 2.5015 -2.4625 -2.5492 24 6 2.9398 -1.5063 -3.3775 25 16 2.6996 0.0608 -2.5999 26 6 3.4761 -2.1079 -4.6627 27 6 3.7105 -3.5970 -4.3334 28 6 2.6954 -3.8309 -3.1964 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9173 -1.1206 1.0286 33 1 1.0871 0.6162 2.5525 34 1 2.7589 1.0460 2.1182 35 1 4.5585 -0.2197 3.1837 36 1 1.5323 0.7721 4.9178 37 1 3.2365 1.2152 4.6578 38 1 3.6889 -0.0474 7.9250 39 1 2.3496 1.0257 7.4530 40 1 3.9732 1.2744 6.7674 41 1 1.0066 -0.7625 6.7606 42 1 1.5641 -1.8997 5.5100 43 1 -0.2540 -4.0285 7.9030 44 1 2.7435 -2.0072 -5.4635 45 1 4.4143 -1.6291 -4.9433 46 1 4.7303 -3.7640 -3.9864 47 1 3.4850 -4.2276 -5.1935 48 1 3.0960 -4.5392 -2.4712 49 1 1.7512 -4.1954 -3.6011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584346468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:21 Heat of formation + Delta-G solvation = -21.899197 kcal Electronic energy + Delta-G solvation = -26858.937121 eV Core-core repulsion = 23139.663680 eV Total energy + Delta-G solvation = -3719.273440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36645 -39.70191 -38.24326 -37.11756 -36.03638 -34.61053 -32.47653 -30.32197 -29.42065 -29.26025 -28.79001 -26.96842 -25.81466 -25.00848 -23.01149 -22.48751 -21.89042 -21.58535 -19.64939 -19.03668 -18.61683 -17.62039 -17.26508 -16.82362 -16.59745 -16.47813 -16.07533 -15.75601 -15.56147 -15.23653 -15.01052 -14.95217 -14.32515 -14.24035 -14.03184 -13.91910 -13.74730 -13.55784 -13.45983 -13.13432 -12.91635 -12.86979 -12.66139 -12.59746 -12.51978 -12.35445 -12.25672 -12.18808 -12.13143 -12.11749 -11.88059 -11.50892 -11.32279 -10.82516 -10.60518 -10.46352 -10.20710 -9.54310 -9.42473 -8.94824 -8.20209 -6.29835 -0.30525 0.19367 0.73255 1.38479 1.41290 1.52774 1.72496 2.40054 2.70864 2.92062 3.12204 3.41100 3.53009 3.57847 3.67531 3.93545 3.96512 4.10752 4.13490 4.16615 4.25094 4.31819 4.44033 4.48784 4.58310 4.60954 4.64403 4.69720 4.73179 4.78002 4.79341 4.86010 4.86270 4.95579 5.07804 5.08954 5.11966 5.20975 5.25285 5.27313 5.30137 5.32100 5.64762 5.96703 6.07358 6.28306 6.35404 6.65700 6.80050 6.86140 7.03607 7.39424 8.91026 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.002211 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.383777 B =12660.914089 C =13592.237295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.168 3.832 3 H 0.086 0.914 4 N -0.683 5.683 5 C 0.042 3.958 6 C 0.124 3.876 7 H 0.061 0.939 8 O -0.562 6.562 9 C 0.029 3.971 10 N -0.545 5.545 11 C 0.043 3.957 12 C 0.210 3.790 13 C -0.523 4.523 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.034 3.966 22 N -0.479 5.479 23 C 0.011 3.989 24 C -0.253 4.253 25 S 0.165 5.835 26 C -0.036 4.036 27 C -0.105 4.105 28 C -0.046 4.046 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.346 0.654 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.379 0.621 36 H 0.030 0.970 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.008 0.992 40 H 0.084 0.916 41 H -0.041 1.041 42 H 0.003 0.997 43 H 0.264 0.736 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.073 0.927 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 10.342 -28.000 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 H 0.103 0.897 4 N -0.316 5.316 5 C -0.087 4.087 6 C 0.064 3.936 7 H 0.079 0.921 8 O -0.368 6.368 9 C -0.100 4.100 10 N -0.269 5.269 11 C -0.105 4.105 12 C 0.083 3.917 13 C -0.561 4.561 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.245 4.245 22 N -0.193 5.193 23 C -0.119 4.119 24 C -0.374 4.374 25 S 0.422 5.578 26 C -0.076 4.076 27 C -0.144 4.144 28 C -0.086 4.086 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.227 0.773 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.103 0.897 41 H -0.023 1.023 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.132 0.868 48 H 0.092 0.908 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.916 9.905 -27.651 29.961 hybrid contribution -0.184 -0.246 0.919 0.969 sum 5.732 9.659 -26.732 28.995 Atomic orbital electron populations 1.21778 0.92376 1.02205 1.02742 1.20204 0.96777 0.94417 0.83110 0.89690 1.60344 1.34757 1.33012 1.03525 1.22619 1.02251 0.93781 0.90079 1.21717 0.83320 0.96857 0.91739 0.92082 1.86672 1.18570 1.37762 1.93748 1.22782 0.99700 0.96221 0.91339 1.61938 1.42340 1.17642 1.04970 1.22207 0.98968 0.95189 0.94181 1.19386 0.87482 0.90426 0.94382 1.21479 0.98700 1.15591 1.20349 0.92135 1.25947 0.95038 0.99281 0.99686 1.70093 1.07826 1.35079 1.44575 0.85385 0.78595 0.77794 0.78874 1.19437 1.20745 1.19087 1.26984 1.03996 0.91711 1.01855 1.65286 1.17833 1.13589 1.22584 1.22266 1.00830 1.00064 0.88771 1.27633 1.09300 0.95114 1.05314 1.83402 1.56887 1.07151 1.10351 1.20844 1.01734 0.94669 0.90377 1.22391 0.98998 0.95044 0.98011 1.21036 1.01299 0.89414 0.96832 0.93665 0.90903 0.90693 0.83474 0.89624 0.91878 0.77326 0.95166 0.88128 0.92819 0.97338 0.89744 1.02301 0.97929 0.92749 0.88143 0.88890 0.90072 0.86817 0.90786 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.40 71.98 0.68 -2.22 16 2 C 0.17 3.74 3.11 44.17 0.14 3.88 16 3 H 0.09 1.45 7.80 -2.39 -0.02 1.43 16 4 N -0.68 -18.95 6.27 -495.45 -3.11 -22.06 16 5 C 0.04 1.06 5.16 86.30 0.44 1.51 16 6 C 0.12 4.22 3.26 30.59 0.10 4.32 16 7 H 0.06 2.77 6.46 -2.39 -0.02 2.75 16 8 O -0.56 -19.09 12.80 -148.98 -1.91 -21.00 16 9 C 0.03 0.98 4.61 86.30 0.40 1.37 16 10 N -0.54 -24.19 4.66 -927.06 -4.32 -28.50 16 11 C 0.04 1.65 9.32 127.69 1.19 2.84 16 12 C 0.21 11.74 4.57 85.56 0.39 12.14 16 13 C -0.52 -31.28 8.58 25.60 0.22 -31.06 16 14 H 0.06 3.56 7.10 -2.92 -0.02 3.54 16 15 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 16 N -0.94 -58.94 13.29 21.45 0.28 -58.65 16 17 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 C 0.03 0.82 5.88 88.62 0.52 1.34 16 22 N -0.48 -13.87 10.49 -176.79 -1.85 -15.72 16 23 C 0.01 0.25 7.70 41.93 0.32 0.57 16 24 C -0.25 -4.73 7.42 25.02 0.19 -4.54 16 25 S 0.16 2.94 23.18 -56.49 -1.31 1.63 16 26 C -0.04 -0.39 6.80 30.61 0.21 -0.18 16 27 C -0.11 -1.00 7.12 31.44 0.22 -0.78 16 28 C -0.05 -0.77 6.81 30.87 0.21 -0.56 16 29 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.50 7.45 -2.39 -0.02 1.48 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.35 10.41 7.91 -89.69 -0.71 9.70 16 33 H 0.09 2.08 7.44 -2.39 -0.02 2.07 16 34 H 0.06 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.38 8.93 9.05 -74.06 -0.67 8.26 16 36 H 0.03 1.05 8.05 -2.39 -0.02 1.03 16 37 H 0.10 2.61 7.82 -2.39 -0.02 2.59 16 38 H 0.05 2.24 7.02 -2.39 -0.02 2.22 16 39 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 40 H 0.08 2.52 7.88 -2.39 -0.02 2.50 16 41 H -0.04 -2.45 8.07 -2.39 -0.02 -2.47 16 42 H 0.00 0.17 6.34 -2.39 -0.02 0.15 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -78.25 404.69 -4.91 -83.16 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.42 Total: 23.69 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.69 Total: -11.02 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -8.99 Total: -124.94 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.91 Total: -21.00 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.31 Total: 1.63 kcal Total: -78.25 -4.91 -83.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584346468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.262 kcal (2) G-P(sol) polarization free energy of solvation -78.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds