Wall clock time and date at job start Tue Mar 31 2020 23:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38232 * 120.35440 * 2 1 4 4 C 1.39719 * 118.48444 * 180.23603 * 3 2 1 5 5 N 1.38555 * 120.49055 * 179.77471 * 4 3 2 6 6 C 1.46955 * 111.00119 * 303.52715 * 5 4 3 7 7 C 1.53059 * 109.36265 * 176.81140 * 6 5 4 8 8 N 1.46952 * 109.36756 * 58.39626 * 7 6 5 9 9 C 1.46896 * 110.99993 * 176.81042 * 8 7 6 10 10 C 1.50700 * 109.47099 * 58.98361 * 9 8 7 11 11 H 1.08000 * 119.99731 * 5.00571 * 10 9 8 12 12 C 1.37876 * 120.00007 * 185.01258 * 10 9 8 13 13 N 1.31508 * 120.00324 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46881 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47172 * 119.99680 * 14 12 10 17 17 H 1.48500 * 109.46988 * 239.99594 * 14 12 10 18 18 C 1.46955 * 110.88378 * 300.68132 * 8 7 6 19 19 C 1.46961 * 111.00002 * 179.72221 * 5 4 3 20 20 N 1.32841 * 119.02154 * 359.50738 * 4 3 2 21 21 C 1.32520 * 120.61716 * 0.24655 * 20 4 3 22 22 C 1.48412 * 119.17555 * 180.02562 * 21 20 4 23 23 C 1.39271 * 119.71878 * 180.02562 * 22 21 20 24 24 C 1.38486 * 119.06947 * 179.97438 * 23 22 21 25 25 C 1.38719 * 118.49403 * 359.97438 * 24 23 22 26 26 C 1.38350 * 119.35471 * 359.97438 * 25 24 23 27 27 N 1.31685 * 120.89231 * 359.74287 * 26 25 24 28 28 N 1.32386 * 120.35930 * 179.73317 * 2 1 3 29 29 H 1.08995 * 109.47605 * 270.26094 * 1 2 3 30 30 H 1.09001 * 109.47159 * 30.26642 * 1 2 3 31 31 H 1.09007 * 109.46971 * 150.25953 * 1 2 3 32 32 H 1.07999 * 120.75991 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.48811 * 296.76974 * 6 5 4 34 34 H 1.08996 * 109.48939 * 56.84508 * 6 5 4 35 35 H 1.09004 * 109.48321 * 298.43046 * 7 6 5 36 36 H 1.08994 * 109.48501 * 178.37009 * 7 6 5 37 37 H 1.09002 * 109.47311 * 178.97755 * 9 8 7 38 38 H 1.09001 * 109.47408 * 298.98055 * 9 8 7 39 39 H 0.96995 * 120.00511 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.48811 * 299.35744 * 18 8 7 41 41 H 1.08997 * 109.49389 * 179.28485 * 18 8 7 42 42 H 1.08999 * 109.48973 * 303.15359 * 19 5 4 43 43 H 1.08993 * 109.48764 * 63.20221 * 19 5 4 44 44 H 1.07999 * 120.46550 * 359.97438 * 23 22 21 45 45 H 1.07998 * 120.75250 * 179.97438 * 24 23 22 46 46 H 1.08005 * 120.32378 * 180.02562 * 25 24 23 47 47 H 1.08009 * 119.55581 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2055 1.1928 0.0000 4 6 3.6019 1.1472 -0.0051 5 7 4.3435 2.3176 -0.0100 6 6 3.9811 3.1660 -1.1539 7 6 4.7627 4.4798 -1.0790 8 7 6.2034 4.1904 -1.0771 9 6 6.9896 5.4313 -1.0822 10 6 6.6395 6.2528 0.1317 11 1 5.9676 5.8547 0.8776 12 6 7.1768 7.5127 0.2898 13 7 7.9951 7.9974 -0.6184 14 14 6.7422 8.5313 1.7941 15 1 5.8085 7.7649 2.6580 16 1 7.9788 8.8427 2.5551 17 1 6.0934 9.7962 1.3648 18 6 6.5658 3.3421 0.0668 19 6 5.7843 2.0282 -0.0081 20 7 4.2082 -0.0348 0.0003 21 6 3.5014 -1.1558 0.0054 22 6 4.2117 -2.4588 0.0119 23 6 3.4802 -3.6439 0.0168 24 6 4.1567 -4.8523 0.0223 25 6 5.5438 -4.8341 0.0222 26 6 6.2061 -3.6195 0.0161 27 7 5.5378 -2.4849 0.0054 28 7 2.1760 -1.1423 0.0053 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3633 -0.8924 -0.5098 32 1 1.6838 2.1385 0.0004 33 1 4.2264 2.6494 -2.0818 34 1 2.9121 3.3767 -1.1261 35 1 4.4969 5.0093 -0.1640 36 1 4.5171 5.0986 -1.9420 37 1 8.0520 5.1884 -1.0624 38 1 6.7639 6.0007 -1.9838 39 1 8.3734 8.8835 -0.5070 40 1 6.3205 3.8586 0.9948 41 1 7.6348 3.1314 0.0391 42 1 6.0298 1.4094 0.8550 43 1 6.0499 1.4983 -0.9228 44 1 2.4004 -3.6209 0.0163 45 1 3.6167 -5.7875 0.0265 46 1 6.1012 -5.7592 0.0260 47 1 7.2861 -3.6016 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:51 Heat of formation + Delta-G solvation = 109.837864 kcal Electronic energy + Delta-G solvation = -28676.112507 eV Core-core repulsion = 24859.400414 eV Total energy + Delta-G solvation = -3816.712093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38421 -40.12290 -38.76017 -35.75538 -34.36460 -32.86610 -32.69398 -31.95044 -30.72304 -30.48023 -28.70917 -27.51284 -25.43793 -25.08486 -23.76786 -23.09604 -22.32888 -21.79133 -21.26644 -19.29194 -17.93482 -17.54371 -16.69721 -16.32966 -16.07569 -15.91089 -15.50150 -15.29092 -14.87936 -14.43297 -14.30797 -14.24941 -14.08786 -14.02055 -13.53679 -13.38524 -13.19859 -13.14857 -12.84107 -12.56935 -12.12599 -12.00479 -11.94321 -11.17722 -11.05401 -10.99521 -10.77003 -10.73239 -10.55153 -10.40064 -10.26841 -10.15377 -9.99680 -9.86467 -9.64934 -9.58052 -9.24057 -9.04922 -8.45083 -8.29256 -7.23198 -6.04376 -4.13411 0.19741 1.03456 1.10212 1.38905 3.24071 3.25850 3.34286 3.36105 3.38338 3.55188 3.95809 4.01358 4.39844 4.43919 4.57920 4.67566 4.79210 4.81275 4.90759 4.96917 5.05930 5.10762 5.24995 5.26062 5.30164 5.34726 5.48338 5.52828 5.55926 5.62189 5.68953 5.74041 5.83445 5.87313 5.98515 6.02952 6.18126 6.25339 6.37443 6.55729 6.65529 6.72808 6.79781 7.16299 7.17558 7.27264 7.50761 7.71967 7.87986 7.99398 8.13599 8.21852 8.26787 8.96991 9.53729 11.00848 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.002578 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.820567 B =10857.828238 C =12035.025954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.187 3.813 3 C -0.242 4.242 4 C 0.366 3.634 5 N -0.469 5.469 6 C 0.065 3.935 7 C 0.064 3.936 8 N -0.544 5.544 9 C 0.187 3.813 10 C -0.549 4.549 11 H 0.059 0.941 12 C 0.065 3.935 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.059 3.941 19 C 0.071 3.929 20 N -0.519 5.519 21 C 0.384 3.616 22 C 0.176 3.824 23 C -0.124 4.124 24 C -0.085 4.085 25 C -0.161 4.161 26 C 0.097 3.903 27 N -0.439 5.439 28 N -0.536 5.536 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 -23.884 0.084 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.043 3.957 3 C -0.268 4.268 4 C 0.125 3.875 5 N -0.185 5.185 6 C -0.061 4.061 7 C -0.065 4.065 8 N -0.268 5.268 9 C 0.062 3.938 10 C -0.588 4.588 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.069 4.069 19 C -0.055 4.055 20 N -0.239 5.239 21 C 0.116 3.884 22 C 0.038 3.962 23 C -0.145 4.145 24 C -0.111 4.111 25 C -0.182 4.182 26 C -0.062 4.062 27 N -0.148 5.148 28 N -0.255 5.255 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.166 0.834 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.736 -23.624 -0.001 26.379 hybrid contribution -0.931 0.874 1.155 1.722 sum -12.667 -22.750 1.154 26.064 Atomic orbital electron populations 1.20737 0.87621 1.03946 1.03614 1.21372 0.97232 0.87315 0.89800 1.22289 0.94064 1.00807 1.09591 1.20311 0.90417 0.88853 0.87885 1.59047 1.08128 1.10902 1.40472 1.22491 1.00126 0.94377 0.89066 1.21962 0.89314 0.93033 1.02224 1.62724 1.03942 1.19960 1.40207 1.19747 0.93001 0.84365 0.96715 1.21786 1.28590 1.00975 1.07456 0.92286 1.24960 0.94866 0.97695 0.96258 1.69948 1.31079 1.17647 1.34250 0.86593 0.78314 0.80253 0.83199 1.19810 1.20951 1.20961 1.22052 0.98695 0.91794 0.94408 1.22214 0.82894 0.97862 1.02542 1.68457 1.40581 0.97428 1.17458 1.20484 0.85670 0.90452 0.91796 1.18767 0.89119 0.89481 0.98855 1.22153 1.02319 0.91712 0.98363 1.21579 0.94422 0.98297 0.96841 1.22342 0.95354 0.99992 1.00502 1.22857 1.00679 0.87027 0.95632 1.67598 1.07826 1.30425 1.08961 1.67966 1.08426 1.30532 1.18575 0.89753 0.90052 0.90042 0.83379 0.93059 0.90186 0.92770 0.90388 0.95282 0.94627 0.92850 0.93404 0.90597 0.89892 0.92443 0.83379 0.84346 0.84481 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.21 36.00 0.37 -0.38 16 2 C 0.19 2.20 6.81 -82.36 -0.56 1.64 16 3 C -0.24 -3.12 8.98 -39.03 -0.35 -3.47 16 4 C 0.37 5.79 6.40 -154.86 -0.99 4.80 16 5 N -0.47 -7.86 4.73 -172.86 -0.82 -8.68 16 6 C 0.06 1.02 5.38 -3.76 -0.02 1.00 16 7 C 0.06 1.21 5.24 -3.77 -0.02 1.19 16 8 N -0.54 -11.66 4.92 -235.91 -1.16 -12.82 16 9 C 0.19 4.77 5.14 -4.98 -0.03 4.74 16 10 C -0.55 -14.92 7.66 -34.44 -0.26 -15.18 16 11 H 0.06 1.61 5.82 -52.49 -0.31 1.30 16 12 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.06 1.19 5.32 -3.76 -0.02 1.17 16 19 C 0.07 1.27 4.80 -3.76 -0.02 1.25 16 20 N -0.52 -8.69 8.52 -10.36 -0.09 -8.77 16 21 C 0.38 5.84 7.57 -157.01 -1.19 4.66 16 22 C 0.18 2.40 6.75 -82.95 -0.56 1.84 16 23 C -0.12 -1.27 9.60 -39.11 -0.38 -1.65 16 24 C -0.09 -0.66 10.17 -39.31 -0.40 -1.06 16 25 C -0.16 -1.21 10.11 -39.36 -0.40 -1.61 16 26 C 0.10 0.97 11.18 -17.57 -0.20 0.77 16 27 N -0.44 -6.12 10.03 -9.77 -0.10 -6.21 16 28 N -0.54 -7.18 9.35 -7.47 -0.07 -7.25 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.15 1.59 7.27 -52.49 -0.38 1.21 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.04 6.87 -51.93 -0.36 0.68 16 35 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 41 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 42 H 0.08 1.48 7.84 -51.93 -0.41 1.07 16 43 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 44 H 0.15 1.36 7.50 -52.49 -0.39 0.97 16 45 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 46 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 47 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -32.61 382.76 -12.61 -45.22 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.74 Total: 0.23 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -5.12 Total: 1.43 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.50 Total: -69.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.61 -12.61 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.058 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds