Wall clock time and date at job start Tue Mar 31 2020 23:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38232 * 120.35440 * 2 1 4 4 C 1.39719 * 118.48444 * 180.23603 * 3 2 1 5 5 N 1.38555 * 120.49055 * 179.77471 * 4 3 2 6 6 C 1.46955 * 111.00119 * 303.52715 * 5 4 3 7 7 C 1.53059 * 109.36265 * 176.81140 * 6 5 4 8 8 N 1.46952 * 109.36756 * 58.39626 * 7 6 5 9 9 C 1.46896 * 110.99993 * 176.81042 * 8 7 6 10 10 C 1.50700 * 109.47099 * 58.98361 * 9 8 7 11 11 H 1.08000 * 119.99731 * 5.00571 * 10 9 8 12 12 C 1.37876 * 120.00007 * 185.01258 * 10 9 8 13 13 N 1.31508 * 120.00324 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46881 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47172 * 119.99680 * 14 12 10 17 17 H 1.48500 * 109.46988 * 239.99594 * 14 12 10 18 18 C 1.46955 * 110.88378 * 300.68132 * 8 7 6 19 19 C 1.46961 * 111.00002 * 179.72221 * 5 4 3 20 20 N 1.32841 * 119.02154 * 359.50738 * 4 3 2 21 21 C 1.32520 * 120.61716 * 0.24655 * 20 4 3 22 22 C 1.48412 * 119.17555 * 180.02562 * 21 20 4 23 23 C 1.39271 * 119.71878 * 180.02562 * 22 21 20 24 24 C 1.38486 * 119.06947 * 179.97438 * 23 22 21 25 25 C 1.38719 * 118.49403 * 359.97438 * 24 23 22 26 26 C 1.38350 * 119.35471 * 359.97438 * 25 24 23 27 27 N 1.31685 * 120.89231 * 359.74287 * 26 25 24 28 28 N 1.32386 * 120.35930 * 179.73317 * 2 1 3 29 29 H 1.08995 * 109.47605 * 270.26094 * 1 2 3 30 30 H 1.09001 * 109.47159 * 30.26642 * 1 2 3 31 31 H 1.09007 * 109.46971 * 150.25953 * 1 2 3 32 32 H 1.07999 * 120.75991 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.48811 * 296.76974 * 6 5 4 34 34 H 1.08996 * 109.48939 * 56.84508 * 6 5 4 35 35 H 1.09004 * 109.48321 * 298.43046 * 7 6 5 36 36 H 1.08994 * 109.48501 * 178.37009 * 7 6 5 37 37 H 1.09002 * 109.47311 * 178.97755 * 9 8 7 38 38 H 1.09001 * 109.47408 * 298.98055 * 9 8 7 39 39 H 0.96995 * 120.00511 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.48811 * 299.35744 * 18 8 7 41 41 H 1.08997 * 109.49389 * 179.28485 * 18 8 7 42 42 H 1.08999 * 109.48973 * 303.15359 * 19 5 4 43 43 H 1.08993 * 109.48764 * 63.20221 * 19 5 4 44 44 H 1.07999 * 120.46550 * 359.97438 * 23 22 21 45 45 H 1.07998 * 120.75250 * 179.97438 * 24 23 22 46 46 H 1.08005 * 120.32378 * 180.02562 * 25 24 23 47 47 H 1.08009 * 119.55581 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2055 1.1928 0.0000 4 6 3.6019 1.1472 -0.0051 5 7 4.3435 2.3176 -0.0100 6 6 3.9811 3.1660 -1.1539 7 6 4.7627 4.4798 -1.0790 8 7 6.2034 4.1904 -1.0771 9 6 6.9896 5.4313 -1.0822 10 6 6.6395 6.2528 0.1317 11 1 5.9676 5.8547 0.8776 12 6 7.1768 7.5127 0.2898 13 7 7.9951 7.9974 -0.6184 14 14 6.7422 8.5313 1.7941 15 1 5.8085 7.7649 2.6580 16 1 7.9788 8.8427 2.5551 17 1 6.0934 9.7962 1.3648 18 6 6.5658 3.3421 0.0668 19 6 5.7843 2.0282 -0.0081 20 7 4.2082 -0.0348 0.0003 21 6 3.5014 -1.1558 0.0054 22 6 4.2117 -2.4588 0.0119 23 6 3.4802 -3.6439 0.0168 24 6 4.1567 -4.8523 0.0223 25 6 5.5438 -4.8341 0.0222 26 6 6.2061 -3.6195 0.0161 27 7 5.5378 -2.4849 0.0054 28 7 2.1760 -1.1423 0.0053 29 1 -0.3634 0.0047 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3633 -0.8924 -0.5098 32 1 1.6838 2.1385 0.0004 33 1 4.2264 2.6494 -2.0818 34 1 2.9121 3.3767 -1.1261 35 1 4.4969 5.0093 -0.1640 36 1 4.5171 5.0986 -1.9420 37 1 8.0520 5.1884 -1.0624 38 1 6.7639 6.0007 -1.9838 39 1 8.3734 8.8835 -0.5070 40 1 6.3205 3.8586 0.9948 41 1 7.6348 3.1314 0.0391 42 1 6.0298 1.4094 0.8550 43 1 6.0499 1.4983 -0.9228 44 1 2.4004 -3.6209 0.0163 45 1 3.6167 -5.7875 0.0265 46 1 6.1012 -5.7592 0.0260 47 1 7.2861 -3.6016 0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:50 Heat of formation + Delta-G solvation = 88.256728 kcal Electronic energy + Delta-G solvation = -28677.048335 eV Core-core repulsion = 24859.400414 eV Total energy + Delta-G solvation = -3817.647921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42990 -40.96375 -40.12053 -37.29534 -35.32347 -34.67142 -33.44267 -33.27715 -32.11784 -31.44102 -29.92560 -28.93566 -26.96374 -26.28255 -24.60536 -24.43930 -23.93517 -22.76601 -22.54118 -20.87627 -19.02637 -18.53133 -18.41284 -17.61151 -16.95696 -16.76157 -16.66155 -16.57028 -16.29074 -15.92961 -15.72965 -15.65488 -15.14973 -15.02624 -14.87487 -14.74549 -14.11122 -13.98216 -13.89688 -13.69475 -13.61397 -13.15286 -12.99577 -12.86980 -12.73504 -12.54851 -12.36767 -12.27290 -12.11843 -11.90100 -11.76360 -11.63473 -11.52022 -11.06416 -10.81672 -10.62392 -10.45033 -10.29224 -9.98899 -9.43767 -9.09956 -8.17282 -6.36162 -0.69278 0.06643 0.32961 0.54996 1.35208 1.37095 1.48756 2.20781 2.36520 2.46264 2.56999 3.01877 3.05957 3.08177 3.27207 3.65034 3.71102 3.86195 3.98300 4.03709 4.05748 4.12605 4.14611 4.20662 4.28427 4.33272 4.37489 4.41385 4.55835 4.61210 4.75800 4.79302 4.84202 4.85393 4.87803 4.99101 5.00986 5.12740 5.16628 5.19319 5.22372 5.31238 5.35325 5.46472 5.71282 5.72396 5.90014 6.01075 6.12686 6.20765 6.41612 6.83382 6.91540 7.14154 7.35243 8.86013 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015605 B = 0.002578 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.820567 B =10857.828238 C =12035.025954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.187 3.813 3 C -0.241 4.241 4 C 0.342 3.658 5 N -0.478 5.478 6 C 0.076 3.924 7 C 0.066 3.934 8 N -0.545 5.545 9 C 0.201 3.799 10 C -0.554 4.554 11 H 0.056 0.944 12 C 0.013 3.987 13 N -0.925 5.925 14 Si 0.957 3.043 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.275 1.275 18 C 0.067 3.933 19 C 0.093 3.907 20 N -0.551 5.551 21 C 0.369 3.631 22 C 0.136 3.864 23 C -0.124 4.124 24 C -0.079 4.079 25 C -0.144 4.144 26 C 0.079 3.921 27 N -0.485 5.485 28 N -0.535 5.535 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.048 0.952 34 H 0.116 0.884 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.003 0.997 38 H 0.013 0.987 39 H 0.265 0.735 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.155 0.845 45 H 0.178 0.822 46 H 0.177 0.823 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.427 -26.078 0.813 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 C -0.266 4.266 4 C 0.103 3.897 5 N -0.195 5.195 6 C -0.049 4.049 7 C -0.063 4.063 8 N -0.269 5.269 9 C 0.075 3.925 10 C -0.593 4.593 11 H 0.074 0.926 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.201 1.201 18 C -0.062 4.062 19 C -0.034 4.034 20 N -0.272 5.272 21 C 0.101 3.899 22 C 0.000 4.000 23 C -0.145 4.145 24 C -0.105 4.105 25 C -0.164 4.164 26 C -0.080 4.080 27 N -0.195 5.195 28 N -0.254 5.254 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.021 0.979 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.173 0.827 45 H 0.196 0.804 46 H 0.195 0.805 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.370 -25.841 0.728 29.577 hybrid contribution -0.124 1.366 0.895 1.638 sum -14.494 -24.476 1.624 28.491 Atomic orbital electron populations 1.20886 0.84085 1.05486 1.04964 1.22167 0.99296 0.86459 0.87831 1.22553 0.92724 1.02397 1.08891 1.20449 0.91561 0.88248 0.89450 1.59098 1.07110 1.12044 1.41202 1.22408 1.01427 0.92240 0.88824 1.21979 0.87845 0.95081 1.01382 1.62643 1.05293 1.18146 1.40862 1.19402 0.92136 0.85633 0.95342 1.21961 1.28314 1.01337 1.07690 0.92580 1.25792 0.94725 0.98950 0.99200 1.70061 1.32093 1.18228 1.36120 0.85516 0.78118 0.78631 0.79466 1.19368 1.20529 1.20082 1.21971 0.98937 0.92443 0.92827 1.21836 0.84073 0.95789 1.01721 1.68384 1.41854 0.98240 1.18685 1.20983 0.86490 0.90781 0.91635 1.18929 0.89503 0.89902 1.01692 1.22307 1.02658 0.91671 0.97914 1.22063 0.94704 0.98719 0.94969 1.22763 0.95608 1.00396 0.97617 1.23315 1.01652 0.87282 0.95730 1.67485 1.08550 1.32782 1.10659 1.68094 1.07656 1.31221 1.18420 0.88235 0.87837 0.89186 0.80991 0.93380 0.86605 0.94595 0.90074 0.97875 0.96843 0.92559 0.95376 0.91136 0.90294 0.93576 0.82690 0.80435 0.80547 0.80553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.21 71.23 0.73 -0.38 16 2 C 0.19 4.04 6.81 42.47 0.29 4.33 16 3 C -0.24 -5.81 8.98 22.63 0.20 -5.61 16 4 C 0.34 10.83 6.40 133.23 0.85 11.68 16 5 N -0.48 -16.16 4.73 -700.81 -3.32 -19.47 16 6 C 0.08 2.37 5.38 86.31 0.46 2.83 16 7 C 0.07 2.54 5.24 86.31 0.45 2.99 16 8 N -0.55 -24.34 4.92 -900.27 -4.43 -28.77 16 9 C 0.20 10.76 5.14 85.56 0.44 11.20 16 10 C -0.55 -30.93 7.66 25.60 0.20 -30.74 16 11 H 0.06 3.12 5.82 -2.91 -0.02 3.11 16 12 C 0.01 0.73 5.46 84.66 0.46 1.19 16 13 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 14 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 C 0.07 2.82 5.32 86.31 0.46 3.28 16 19 C 0.09 3.46 4.80 86.31 0.41 3.87 16 20 N -0.55 -19.00 8.52 -186.70 -1.59 -20.59 16 21 C 0.37 11.40 7.57 137.60 1.04 12.44 16 22 C 0.14 3.77 6.75 41.98 0.28 4.06 16 23 C -0.12 -2.39 9.60 22.58 0.22 -2.18 16 24 C -0.08 -0.97 10.17 22.44 0.23 -0.75 16 25 C -0.14 -1.74 10.11 22.41 0.23 -1.52 16 26 C 0.08 1.53 11.18 84.74 0.95 2.47 16 27 N -0.48 -13.88 10.03 -184.82 -1.85 -15.74 16 28 N -0.54 -13.89 9.35 -177.54 -1.66 -15.55 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.76 8.09 -2.39 -0.02 0.75 16 31 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.17 3.18 7.27 -2.91 -0.02 3.16 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.12 2.76 6.87 -2.39 -0.02 2.74 16 35 H 0.04 1.53 6.62 -2.38 -0.02 1.51 16 36 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 38 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.10 16 40 H 0.03 1.29 6.78 -2.39 -0.02 1.27 16 41 H 0.07 2.97 8.12 -2.39 -0.02 2.95 16 42 H 0.08 2.98 7.84 -2.39 -0.02 2.96 16 43 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 44 H 0.16 2.63 7.50 -2.91 -0.02 2.61 16 45 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 46 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 47 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -74.89 382.76 -1.65 -76.54 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.98 Total: 12.99 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.90 Total: 19.19 kcal Atomic # 7 Polarization: -142.51 SS G_CDS: -12.56 Total: -155.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.89 -1.65 -76.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.799 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds