Wall clock time and date at job start Tue Mar 31 2020 22:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47399 * 2 1 4 4 C 1.34950 * 126.03770 * 124.99405 * 3 2 1 5 5 C 1.35319 * 107.74496 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.03683 * 180.02562 * 5 4 3 7 7 H 1.08992 * 109.34533 * 20.19628 * 6 5 4 8 8 C 1.53254 * 109.40248 * 260.39065 * 6 5 4 9 9 S 1.81898 * 108.50313 * 177.88185 * 8 6 5 10 10 O 1.42100 * 109.46945 * 295.46305 * 9 8 6 11 11 C 1.81893 * 101.91690 * 51.30559 * 9 8 6 12 12 C 1.53248 * 108.50727 * 308.69559 * 11 9 8 13 13 N 1.46466 * 109.86055 * 61.99812 * 12 11 9 14 14 C 1.46898 * 110.99892 * 162.23146 * 13 12 11 15 15 C 1.53002 * 109.46886 * 77.03040 * 14 13 12 16 16 H 1.09003 * 109.46824 * 51.20604 * 15 14 13 17 17 C 1.52997 * 109.47269 * 291.21021 * 15 14 13 18 18 C 1.52999 * 109.47225 * 171.20510 * 15 14 13 19 19 C 1.50707 * 109.47151 * 184.99940 * 18 15 14 20 20 H 1.08001 * 119.99612 * 0.02562 * 19 18 15 21 21 C 1.37872 * 119.99846 * 180.02562 * 19 18 15 22 22 N 1.31520 * 119.99835 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00200 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47165 * 90.00138 * 23 21 19 25 25 H 1.48502 * 109.47309 * 210.00102 * 23 21 19 26 26 H 1.48504 * 109.47177 * 330.00115 * 23 21 19 27 27 C 1.39867 * 107.91979 * 0.26391 * 5 4 3 28 28 N 1.30832 * 108.20234 * 359.55726 * 27 5 4 29 29 H 1.09000 * 109.46810 * 60.00193 * 1 2 3 30 30 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47151 * 300.00125 * 1 2 3 32 32 H 1.08998 * 109.47151 * 239.99875 * 2 1 3 33 33 H 1.09000 * 109.46810 * 119.99807 * 2 1 3 34 34 H 1.07999 * 126.13069 * 0.04747 * 4 3 2 35 35 H 1.08991 * 109.62990 * 58.17472 * 8 6 5 36 36 H 1.08997 * 109.79465 * 297.68029 * 8 6 5 37 37 H 1.09001 * 109.63421 * 188.98886 * 11 9 8 38 38 H 1.08999 * 109.63349 * 68.39896 * 11 9 8 39 39 H 1.09001 * 109.40660 * 301.88515 * 12 11 9 40 40 H 1.09006 * 109.34477 * 182.08294 * 12 11 9 41 41 H 1.08997 * 109.47853 * 317.02723 * 14 13 12 42 42 H 1.09006 * 109.47378 * 197.02425 * 14 13 12 43 43 H 1.09002 * 109.46692 * 323.27320 * 17 15 14 44 44 H 1.08996 * 109.47240 * 83.27536 * 17 15 14 45 45 H 1.09001 * 109.47090 * 203.27854 * 17 15 14 46 46 H 1.08997 * 109.47492 * 305.00008 * 18 15 14 47 47 H 1.09000 * 109.47067 * 65.00572 * 18 15 14 48 48 H 0.96997 * 119.99991 * 179.97438 * 22 21 19 49 49 H 1.08007 * 125.89453 * 179.73912 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8731 1.9210 0.8940 5 6 3.0713 3.2137 0.5463 6 6 3.9549 4.1998 1.2661 7 1 4.6775 3.6586 1.8766 8 6 3.0938 5.0919 2.1669 9 16 4.1893 6.2290 3.0700 10 8 5.0319 5.4846 3.9390 11 6 5.1841 6.9407 1.7238 12 6 5.7573 5.7942 0.8840 13 7 4.6661 5.0224 0.2849 14 6 5.1525 4.2045 -0.8342 15 6 5.8823 2.9756 -0.2882 16 1 5.2495 2.4721 0.4426 17 6 7.1865 3.4128 0.3818 18 6 6.1962 2.0162 -1.4379 19 6 6.8041 0.7524 -0.8860 20 1 6.9514 0.6443 0.1785 21 6 7.1722 -0.2655 -1.7398 22 7 7.7032 -1.3682 -1.2582 23 14 6.9168 -0.0787 -3.5808 24 1 8.1257 0.5331 -4.1888 25 1 6.6803 -1.4141 -4.1858 26 1 5.7413 0.7935 -3.8315 27 6 2.3071 3.4743 -0.5957 28 7 1.6802 2.3749 -0.9276 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3193 1.4125 1.7358 35 1 2.5431 4.4736 2.8756 36 1 2.3933 5.6641 1.5586 37 1 5.9992 7.5306 2.1431 38 1 4.5545 7.5735 1.0983 39 1 6.3547 5.1421 1.5211 40 1 6.3867 6.2047 0.0943 41 1 5.8381 4.7932 -1.4437 42 1 4.3078 3.8841 -1.4442 43 1 7.6234 4.2394 -0.1786 44 1 6.9805 3.7344 1.4026 45 1 7.8847 2.5759 0.3984 46 1 5.2766 1.7743 -1.9708 47 1 6.8999 2.4884 -2.1234 48 1 7.9618 -2.0845 -1.8589 49 1 2.2473 4.4191 -1.1157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602636230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:50 Heat of formation + Delta-G solvation = 54.924036 kcal Electronic energy + Delta-G solvation = -29536.492667 eV Core-core repulsion = 25820.550532 eV Total energy + Delta-G solvation = -3715.942135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23673 -38.84784 -35.60031 -34.73767 -34.27857 -32.32067 -32.11654 -30.22070 -29.74275 -28.33423 -27.43316 -25.45216 -24.02313 -23.39671 -22.32464 -21.25468 -20.59320 -19.52447 -18.75857 -17.62194 -16.95293 -16.55967 -15.79874 -15.63495 -15.28661 -15.03493 -14.89233 -14.21987 -14.17738 -13.90120 -13.85044 -13.63947 -13.45853 -12.91488 -12.82882 -12.62394 -12.40922 -12.35895 -12.10745 -11.97043 -11.83281 -11.66958 -11.64593 -11.43450 -11.24595 -11.17127 -10.88321 -10.59740 -10.56765 -10.35195 -9.82659 -9.78967 -9.76502 -9.65528 -9.13309 -9.03521 -8.54018 -8.42562 -7.91923 -7.83323 -6.04808 -4.01110 1.66300 2.18815 2.52306 2.76010 3.06755 3.28694 3.36161 3.41845 3.76916 4.07403 4.44756 4.61227 4.88164 4.96622 4.99624 5.07743 5.17029 5.20749 5.22911 5.26582 5.29990 5.36943 5.47086 5.59776 5.64855 5.67036 5.72935 5.76932 5.84073 5.91168 5.96427 6.02134 6.10150 6.16505 6.22084 6.28228 6.40145 6.50722 6.73288 6.89482 6.93694 7.09894 7.23118 7.25604 7.31998 7.35830 7.50691 7.80726 8.00003 8.55119 9.00281 9.58900 11.08560 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009470 B = 0.005033 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.000713 B = 5562.261091 C = 7488.427233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 N -0.366 5.366 4 C 0.072 3.928 5 C -0.224 4.224 6 C 0.173 3.827 7 H 0.053 0.947 8 C -0.418 4.418 9 S 1.219 4.781 10 O -0.854 6.854 11 C -0.431 4.431 12 C 0.046 3.954 13 N -0.539 5.539 14 C 0.062 3.938 15 C -0.111 4.111 16 H 0.072 0.928 17 C -0.146 4.146 18 C -0.001 4.001 19 C -0.509 4.509 20 H 0.070 0.930 21 C 0.066 3.934 22 N -0.906 5.906 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.266 1.266 27 C 0.068 3.932 28 N -0.300 5.300 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.012 0.988 47 H 0.007 0.993 48 H 0.261 0.739 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 15.860 6.526 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 N -0.148 5.148 4 C -0.075 4.075 5 C -0.237 4.237 6 C 0.063 3.937 7 H 0.071 0.929 8 C -0.556 4.556 9 S 1.419 4.581 10 O -0.849 6.849 11 C -0.569 4.569 12 C -0.082 4.082 13 N -0.263 5.263 14 C -0.065 4.065 15 C -0.131 4.131 16 H 0.091 0.909 17 C -0.203 4.203 18 C -0.039 4.039 19 C -0.547 4.547 20 H 0.088 0.912 21 C -0.134 4.134 22 N -0.545 5.545 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.191 1.191 27 C -0.118 4.118 28 N -0.121 5.121 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.184 0.816 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.030 0.970 47 H 0.025 0.975 48 H 0.071 0.929 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.841 15.493 6.475 23.085 hybrid contribution 2.398 -1.909 -1.358 3.353 sum -13.443 13.584 5.116 19.784 Atomic orbital electron populations 1.22032 0.94136 1.02522 1.03202 1.21657 0.95440 0.77796 1.04229 1.48458 1.35694 1.09927 1.20700 1.22201 0.94910 0.94167 0.96267 1.19557 1.07845 0.94287 1.01974 1.19532 0.92586 0.90338 0.91239 0.92903 1.27694 1.09595 1.10445 1.07850 1.70012 0.98163 1.04732 0.85226 1.93148 1.67478 1.73325 1.50963 1.27615 1.11032 1.05418 1.12880 1.22288 0.93079 0.93987 0.98879 1.61485 1.26778 1.27456 1.10539 1.22448 0.98951 0.93155 0.91963 1.21698 0.95905 0.95820 0.99686 0.90948 1.22130 0.98980 1.01296 0.97928 1.19496 0.95862 0.94772 0.93774 1.21105 1.39698 0.98531 0.95370 0.91188 1.25003 0.94763 0.95190 0.98474 1.69920 1.43099 1.06398 1.35099 0.86842 0.79178 0.77298 0.86369 1.20358 1.21522 1.19093 1.23557 0.95287 0.97175 0.95815 1.77254 1.24624 0.96767 1.13463 0.91230 0.90978 0.92379 0.89586 0.88744 0.81639 0.87536 0.85725 0.87646 0.85877 0.92431 0.90247 0.91684 0.90228 0.94189 0.94422 0.90860 0.97021 0.97469 0.92894 0.80299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.10 37.16 0.38 -1.26 16 2 C 0.13 1.63 7.23 -4.04 -0.03 1.60 16 3 N -0.37 -5.66 3.68 -61.37 -0.23 -5.89 16 4 C 0.07 1.12 10.43 -17.22 -0.18 0.94 16 5 C -0.22 -3.35 2.95 -105.05 -0.31 -3.66 16 6 C 0.17 2.43 1.56 -68.97 -0.11 2.32 16 7 H 0.05 0.92 6.76 -51.93 -0.35 0.56 16 8 C -0.42 -4.19 5.93 37.29 0.22 -3.97 16 9 S 1.22 11.08 13.81 -107.50 -1.48 9.60 16 10 O -0.85 -13.88 18.14 -35.23 -0.64 -14.52 16 11 C -0.43 -3.92 6.67 37.29 0.25 -3.67 16 12 C 0.05 0.60 4.11 -3.93 -0.02 0.59 16 13 N -0.54 -7.40 4.36 -228.43 -1.00 -8.39 16 14 C 0.06 1.03 4.37 -3.82 -0.02 1.01 16 15 C -0.11 -2.25 1.72 -90.62 -0.16 -2.41 16 16 H 0.07 1.53 4.45 -51.93 -0.23 1.30 16 17 C -0.15 -2.91 7.82 37.16 0.29 -2.62 16 18 C 0.00 -0.03 3.51 -27.88 -0.10 -0.12 16 19 C -0.51 -14.57 8.63 -34.44 -0.30 -14.87 16 20 H 0.07 2.17 7.55 -52.49 -0.40 1.78 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.91 -28.21 13.96 55.43 0.77 -27.43 16 23 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 27 C 0.07 1.02 9.50 -17.37 -0.16 0.85 16 28 N -0.30 -4.92 12.42 30.62 0.38 -4.54 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.92 4.73 -51.93 -0.25 0.67 16 40 H 0.08 1.02 7.56 -51.93 -0.39 0.62 16 41 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 42 H 0.08 1.38 5.46 -51.93 -0.28 1.10 16 43 H 0.04 0.72 7.35 -51.93 -0.38 0.33 16 44 H 0.04 0.71 5.66 -51.93 -0.29 0.42 16 45 H 0.07 1.67 6.64 -51.93 -0.34 1.33 16 46 H 0.01 0.30 7.18 -51.93 -0.37 -0.08 16 47 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 49 H 0.18 2.30 7.96 -52.48 -0.42 1.89 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -37.93 380.49 -9.35 -47.28 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.88 Total: 3.83 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -0.34 Total: -23.41 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.07 Total: -46.26 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.64 Total: -14.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Atomic # 16 Polarization: 11.08 SS G_CDS: -1.48 Total: 9.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.93 -9.35 -47.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602636230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.205 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds