Wall clock time and date at job start Tue Mar 31 2020 22:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47399 * 2 1 4 4 C 1.34950 * 126.03770 * 124.99405 * 3 2 1 5 5 C 1.35319 * 107.74496 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.03683 * 180.02562 * 5 4 3 7 7 H 1.08992 * 109.34533 * 20.19628 * 6 5 4 8 8 C 1.53254 * 109.40248 * 260.39065 * 6 5 4 9 9 S 1.81898 * 108.50313 * 177.88185 * 8 6 5 10 10 O 1.42100 * 109.46945 * 295.46305 * 9 8 6 11 11 C 1.81893 * 101.91690 * 51.30559 * 9 8 6 12 12 C 1.53248 * 108.50727 * 308.69559 * 11 9 8 13 13 N 1.46466 * 109.86055 * 61.99812 * 12 11 9 14 14 C 1.46898 * 110.99892 * 162.23146 * 13 12 11 15 15 C 1.53002 * 109.46886 * 77.03040 * 14 13 12 16 16 H 1.09003 * 109.46824 * 51.20604 * 15 14 13 17 17 C 1.52997 * 109.47269 * 291.21021 * 15 14 13 18 18 C 1.52999 * 109.47225 * 171.20510 * 15 14 13 19 19 C 1.50707 * 109.47151 * 184.99940 * 18 15 14 20 20 H 1.08001 * 119.99612 * 0.02562 * 19 18 15 21 21 C 1.37872 * 119.99846 * 180.02562 * 19 18 15 22 22 N 1.31520 * 119.99835 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00200 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47165 * 90.00138 * 23 21 19 25 25 H 1.48502 * 109.47309 * 210.00102 * 23 21 19 26 26 H 1.48504 * 109.47177 * 330.00115 * 23 21 19 27 27 C 1.39867 * 107.91979 * 0.26391 * 5 4 3 28 28 N 1.30832 * 108.20234 * 359.55726 * 27 5 4 29 29 H 1.09000 * 109.46810 * 60.00193 * 1 2 3 30 30 H 1.08994 * 109.47415 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47151 * 300.00125 * 1 2 3 32 32 H 1.08998 * 109.47151 * 239.99875 * 2 1 3 33 33 H 1.09000 * 109.46810 * 119.99807 * 2 1 3 34 34 H 1.07999 * 126.13069 * 0.04747 * 4 3 2 35 35 H 1.08991 * 109.62990 * 58.17472 * 8 6 5 36 36 H 1.08997 * 109.79465 * 297.68029 * 8 6 5 37 37 H 1.09001 * 109.63421 * 188.98886 * 11 9 8 38 38 H 1.08999 * 109.63349 * 68.39896 * 11 9 8 39 39 H 1.09001 * 109.40660 * 301.88515 * 12 11 9 40 40 H 1.09006 * 109.34477 * 182.08294 * 12 11 9 41 41 H 1.08997 * 109.47853 * 317.02723 * 14 13 12 42 42 H 1.09006 * 109.47378 * 197.02425 * 14 13 12 43 43 H 1.09002 * 109.46692 * 323.27320 * 17 15 14 44 44 H 1.08996 * 109.47240 * 83.27536 * 17 15 14 45 45 H 1.09001 * 109.47090 * 203.27854 * 17 15 14 46 46 H 1.08997 * 109.47492 * 305.00008 * 18 15 14 47 47 H 1.09000 * 109.47067 * 65.00572 * 18 15 14 48 48 H 0.96997 * 119.99991 * 179.97438 * 22 21 19 49 49 H 1.08007 * 125.89453 * 179.73912 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8731 1.9210 0.8940 5 6 3.0713 3.2137 0.5463 6 6 3.9549 4.1998 1.2661 7 1 4.6775 3.6586 1.8766 8 6 3.0938 5.0919 2.1669 9 16 4.1893 6.2290 3.0700 10 8 5.0319 5.4846 3.9390 11 6 5.1841 6.9407 1.7238 12 6 5.7573 5.7942 0.8840 13 7 4.6661 5.0224 0.2849 14 6 5.1525 4.2045 -0.8342 15 6 5.8823 2.9756 -0.2882 16 1 5.2495 2.4721 0.4426 17 6 7.1865 3.4128 0.3818 18 6 6.1962 2.0162 -1.4379 19 6 6.8041 0.7524 -0.8860 20 1 6.9514 0.6443 0.1785 21 6 7.1722 -0.2655 -1.7398 22 7 7.7032 -1.3682 -1.2582 23 14 6.9168 -0.0787 -3.5808 24 1 8.1257 0.5331 -4.1888 25 1 6.6803 -1.4141 -4.1858 26 1 5.7413 0.7935 -3.8315 27 6 2.3071 3.4743 -0.5957 28 7 1.6802 2.3749 -0.9276 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3193 1.4125 1.7358 35 1 2.5431 4.4736 2.8756 36 1 2.3933 5.6641 1.5586 37 1 5.9992 7.5306 2.1431 38 1 4.5545 7.5735 1.0983 39 1 6.3547 5.1421 1.5211 40 1 6.3867 6.2047 0.0943 41 1 5.8381 4.7932 -1.4437 42 1 4.3078 3.8841 -1.4442 43 1 7.6234 4.2394 -0.1786 44 1 6.9805 3.7344 1.4026 45 1 7.8847 2.5759 0.3984 46 1 5.2766 1.7743 -1.9708 47 1 6.8999 2.4884 -2.1234 48 1 7.9618 -2.0845 -1.8589 49 1 2.2473 4.4191 -1.1157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602636230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:49 Heat of formation + Delta-G solvation = 26.337659 kcal Electronic energy + Delta-G solvation = -29537.732265 eV Core-core repulsion = 25820.550532 eV Total energy + Delta-G solvation = -3717.181733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42109 -40.10507 -36.69328 -36.39548 -35.36565 -34.28554 -33.24938 -31.39590 -30.98614 -29.40682 -29.29713 -26.87379 -25.02903 -24.58839 -24.00015 -22.45315 -21.82318 -20.89483 -20.17493 -19.04181 -18.46332 -17.84276 -17.09619 -16.72141 -16.41135 -16.28672 -16.01127 -15.91448 -15.39781 -15.24192 -14.98086 -14.88545 -14.68357 -14.49604 -14.16404 -13.90183 -13.74972 -13.61581 -13.49155 -13.09621 -13.04370 -12.96101 -12.80206 -12.66168 -12.60364 -12.45691 -12.29593 -12.13175 -12.08727 -11.80197 -11.66605 -11.47772 -11.39721 -11.19091 -10.82772 -10.76641 -10.25386 -9.49142 -9.18373 -8.88690 -8.35466 -6.37122 0.88156 0.99305 1.25021 1.26793 1.38769 1.63859 1.73873 1.94232 2.27554 2.78749 2.99601 3.08131 3.56780 3.85675 3.91024 3.99063 4.03790 4.05721 4.11006 4.17830 4.19703 4.26623 4.30939 4.40216 4.46238 4.51601 4.67904 4.69320 4.71173 4.75816 4.80201 4.84055 4.94311 4.95707 5.04987 5.06890 5.18915 5.19520 5.24003 5.25458 5.32731 5.44951 5.57411 5.63255 5.79334 5.97770 6.09563 6.17618 6.24700 6.68610 6.82113 7.26130 8.81385 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009470 B = 0.005033 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.000713 B = 5562.261091 C = 7488.427233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.119 3.881 3 N -0.372 5.372 4 C 0.049 3.951 5 C -0.223 4.223 6 C 0.172 3.828 7 H 0.012 0.988 8 C -0.416 4.416 9 S 1.287 4.713 10 O -0.928 6.928 11 C -0.424 4.424 12 C 0.036 3.964 13 N -0.515 5.515 14 C 0.071 3.929 15 C -0.106 4.106 16 H 0.057 0.943 17 C -0.135 4.135 18 C 0.008 3.992 19 C -0.512 4.512 20 H 0.027 0.973 21 C 0.007 3.993 22 N -0.951 5.951 23 Si 0.944 3.056 24 H -0.265 1.265 25 H -0.283 1.283 26 H -0.255 1.255 27 C 0.071 3.929 28 N -0.322 5.322 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.119 0.881 38 H 0.164 0.836 39 H 0.024 0.976 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.033 0.967 46 H 0.004 0.996 47 H 0.012 0.988 48 H 0.265 0.735 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.534 19.009 4.956 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.002 4.002 3 N -0.154 5.154 4 C -0.099 4.099 5 C -0.236 4.236 6 C 0.062 3.938 7 H 0.030 0.970 8 C -0.554 4.554 9 S 1.488 4.512 10 O -0.924 6.924 11 C -0.563 4.563 12 C -0.092 4.092 13 N -0.238 5.238 14 C -0.057 4.057 15 C -0.126 4.126 16 H 0.075 0.925 17 C -0.192 4.192 18 C -0.030 4.030 19 C -0.550 4.550 20 H 0.045 0.955 21 C -0.189 4.189 22 N -0.592 5.592 23 Si 0.768 3.232 24 H -0.190 1.190 25 H -0.209 1.209 26 H -0.179 1.179 27 C -0.115 4.115 28 N -0.144 5.144 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.182 0.818 35 H 0.127 0.873 36 H 0.178 0.822 37 H 0.138 0.862 38 H 0.182 0.818 39 H 0.042 0.958 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.022 0.978 47 H 0.030 0.970 48 H 0.074 0.926 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.606 18.653 4.932 26.119 hybrid contribution 2.996 -2.931 -0.797 4.266 sum -14.610 15.722 4.135 21.857 Atomic orbital electron populations 1.21935 0.92003 1.03927 1.02656 1.21915 0.97252 0.76768 1.04224 1.48704 1.35662 1.10601 1.20433 1.22415 0.95576 0.95022 0.96853 1.19695 1.07693 0.94145 1.02088 1.19552 0.92242 0.90867 0.91126 0.97036 1.27750 1.09827 1.10276 1.07529 1.69209 0.96175 1.02212 0.83641 1.93021 1.69585 1.74826 1.54988 1.27641 1.12049 1.04423 1.12182 1.22406 0.93014 0.94620 0.99175 1.61621 1.26407 1.26047 1.09760 1.22295 0.98653 0.91827 0.92956 1.21618 0.96217 0.96800 0.97933 0.92486 1.22012 0.98055 1.00349 0.98775 1.19376 0.94889 0.93729 0.94993 1.21334 1.39588 1.00576 0.93544 0.95487 1.25908 0.94500 0.94727 1.03770 1.70069 1.44573 1.07483 1.37066 0.85754 0.79774 0.77726 0.79965 1.19026 1.20887 1.17947 1.23911 0.94523 0.97655 0.95446 1.77199 1.25539 0.97454 1.14174 0.92418 0.88582 0.92091 0.90901 0.87485 0.81845 0.87326 0.82160 0.86223 0.81837 0.95790 0.89232 0.90321 0.90357 0.91939 0.93993 0.94813 0.97779 0.97010 0.92644 0.77916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.10 71.98 0.73 -2.15 16 2 C 0.12 3.02 7.23 86.38 0.62 3.65 16 3 N -0.37 -11.60 3.68 -348.07 -1.28 -12.89 16 4 C 0.05 1.56 10.43 83.54 0.87 2.43 16 5 C -0.22 -6.55 2.95 -20.14 -0.06 -6.61 16 6 C 0.17 4.68 1.56 44.34 0.07 4.74 16 7 H 0.01 0.42 6.76 -2.39 -0.02 0.40 16 8 C -0.42 -7.34 5.93 72.07 0.43 -6.92 16 9 S 1.29 20.48 13.81 -56.49 -0.78 19.70 16 10 O -0.93 -30.14 18.14 -148.98 -2.70 -32.85 16 11 C -0.42 -6.03 6.67 72.07 0.48 -5.55 16 12 C 0.04 0.86 4.11 86.47 0.36 1.21 16 13 N -0.52 -12.91 4.36 -876.61 -3.82 -16.73 16 14 C 0.07 2.21 4.37 86.30 0.38 2.59 16 15 C -0.11 -4.32 1.72 -10.79 -0.02 -4.34 16 16 H 0.06 2.51 4.45 -2.39 -0.01 2.50 16 17 C -0.13 -5.49 7.82 71.98 0.56 -4.93 16 18 C 0.01 0.40 3.51 29.85 0.10 0.50 16 19 C -0.51 -30.50 8.63 25.60 0.22 -30.28 16 20 H 0.03 1.79 7.55 -2.91 -0.02 1.77 16 21 C 0.01 0.45 5.47 84.65 0.46 0.91 16 22 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 23 Si 0.94 46.40 27.47 68.60 1.88 48.28 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.26 -12.03 6.54 99.48 0.65 -11.38 16 27 C 0.07 1.98 9.50 85.24 0.81 2.79 16 28 N -0.32 -10.31 12.42 -57.02 -0.71 -11.02 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.16 5.09 8.06 -2.91 -0.02 5.07 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.02 0.75 4.73 -2.39 -0.01 0.74 16 40 H 0.09 1.97 7.56 -2.38 -0.02 1.96 16 41 H 0.08 2.30 7.45 -2.39 -0.02 2.28 16 42 H 0.08 2.53 5.46 -2.38 -0.01 2.52 16 43 H 0.06 2.20 7.35 -2.39 -0.02 2.19 16 44 H 0.04 1.66 5.66 -2.39 -0.01 1.65 16 45 H 0.03 1.61 6.64 -2.39 -0.02 1.59 16 46 H 0.00 0.20 7.18 -2.39 -0.02 0.18 16 47 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 48 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 49 H 0.20 4.52 7.96 -2.91 -0.02 4.50 16 Total: -1.00 -86.74 380.49 -0.21 -86.96 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.88 Total: 21.35 kcal Atomic # 6 Polarization: -47.97 SS G_CDS: 6.02 Total: -41.95 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -5.51 Total: -101.48 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -2.70 Total: -32.85 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.28 kcal Atomic # 16 Polarization: 20.48 SS G_CDS: -0.78 Total: 19.70 kcal Total: -86.74 -0.21 -86.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602636230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.293 kcal (2) G-P(sol) polarization free energy of solvation -86.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds