Wall clock time and date at job start Tue Mar 31 2020 22:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99821 * 2 1 4 4 C 1.53005 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46825 * 299.99681 * 4 3 2 6 6 C 1.52992 * 109.47389 * 59.99798 * 4 3 2 7 7 O 1.42901 * 109.47319 * 65.00169 * 6 4 3 8 8 N 1.46896 * 109.46963 * 180.02562 * 4 3 2 9 9 C 1.46901 * 111.00107 * 179.97438 * 8 4 3 10 10 C 1.53000 * 109.47389 * 179.97438 * 9 8 4 11 11 H 1.08997 * 109.47610 * 305.00413 * 10 9 8 12 12 O 1.42901 * 109.46666 * 65.00368 * 10 9 8 13 13 C 1.53002 * 109.47294 * 185.00109 * 10 9 8 14 14 O 1.42894 * 109.47282 * 175.00004 * 13 10 9 15 15 C 1.35679 * 117.00173 * 180.02562 * 14 13 10 16 16 C 1.39314 * 119.81427 * 359.72681 * 15 14 13 17 17 C 1.36433 * 120.17995 * 179.76084 * 16 15 14 18 18 C 1.40835 * 119.81314 * 0.51436 * 17 16 15 19 19 C 1.41219 * 120.17899 * 179.72197 * 18 17 16 20 20 H 1.08001 * 119.99899 * 24.57034 * 19 18 17 21 21 C 1.39887 * 119.99815 * 204.57362 * 19 18 17 22 22 N 1.30876 * 120.00113 * 17.92591 * 21 19 18 23 23 Si 1.86808 * 119.99809 * 197.93235 * 21 19 18 24 24 H 1.48494 * 109.47182 * 59.99818 * 23 21 19 25 25 H 1.48497 * 109.46826 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46818 * 299.99595 * 23 21 19 27 27 C 1.40832 * 119.64074 * 359.73811 * 18 17 16 28 28 C 1.36435 * 119.81210 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.47319 * 300.00273 * 1 2 3 30 30 H 1.09006 * 109.47286 * 60.00200 * 1 2 3 31 31 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47542 * 60.00323 * 3 2 1 33 33 H 1.09000 * 109.47197 * 299.99414 * 3 2 1 34 34 H 1.09003 * 109.47326 * 300.00165 * 5 4 3 35 35 H 1.09001 * 109.47536 * 60.00170 * 5 4 3 36 36 H 1.09003 * 109.46966 * 180.02562 * 5 4 3 37 37 H 1.09002 * 109.47509 * 185.00282 * 6 4 3 38 38 H 1.09000 * 109.47123 * 305.00246 * 6 4 3 39 39 H 0.96700 * 114.00270 * 180.02562 * 7 6 4 40 40 H 1.00904 * 111.00230 * 303.95162 * 8 4 3 41 41 H 1.08997 * 109.47659 * 300.00040 * 9 8 4 42 42 H 1.09007 * 109.46797 * 60.00328 * 9 8 4 43 43 H 0.96699 * 114.00163 * 60.00272 * 12 10 9 44 44 H 1.08994 * 109.47192 * 295.00464 * 13 10 9 45 45 H 1.09008 * 109.46625 * 55.00159 * 13 10 9 46 46 H 1.08004 * 119.90685 * 0.02562 * 16 15 14 47 47 H 1.08007 * 120.09522 * 180.25574 * 17 16 15 48 48 H 0.97002 * 119.99543 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.09149 * 179.97438 * 27 18 17 50 50 H 1.07997 * 119.90603 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9873 0.4252 1.2483 6 6 3.9864 0.4256 -1.2501 7 8 3.6674 1.1913 -2.4137 8 7 4.1328 2.5266 0.0000 9 6 5.5998 2.4498 0.0000 10 6 6.1846 3.8637 0.0000 11 1 5.7788 4.4248 -0.8417 12 8 5.8405 4.5213 1.2211 13 6 7.7075 3.7857 -0.1257 14 8 8.2439 5.1050 -0.2428 15 6 9.5909 5.2137 -0.3642 16 6 10.3812 4.0665 -0.3643 17 6 11.7359 4.1669 -0.4908 18 6 12.3359 5.4354 -0.6106 19 6 13.7379 5.5486 -0.7360 20 1 14.3130 4.7243 -1.1312 21 6 14.3818 6.7284 -0.3483 22 7 13.7725 7.5783 0.4386 23 14 16.1114 7.0909 -0.9540 24 1 16.1137 7.1518 -2.4377 25 1 16.5651 8.3939 -0.4049 26 1 17.0299 6.0155 -0.5012 27 6 11.5301 6.5904 -0.6042 28 6 10.1764 6.4723 -0.4818 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.6660 0.9660 2.1385 35 1 3.5440 -0.5706 1.2484 36 1 5.0740 0.3395 1.2481 37 1 5.0632 0.2618 -1.2069 38 1 3.4743 -0.5355 -1.2960 39 1 3.9252 0.7697 -3.2449 40 1 3.7990 3.0715 -0.7810 41 1 5.9359 1.9173 0.8897 42 1 5.9358 1.9181 -0.8903 43 1 6.1699 4.0763 2.0139 44 1 8.1209 3.3026 0.7595 45 1 7.9697 3.2069 -1.0114 46 1 9.9198 3.0947 -0.2683 47 1 12.3470 3.2763 -0.4949 48 1 14.2192 8.3962 0.7077 49 1 11.9825 7.5668 -0.6952 50 1 9.5570 7.3570 -0.4763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602932624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:42 Heat of formation + Delta-G solvation = -161.830769 kcal Electronic energy + Delta-G solvation = -29249.669292 eV Core-core repulsion = 25049.282341 eV Total energy + Delta-G solvation = -4200.386951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.79626 -38.93122 -37.73084 -37.09524 -36.08267 -35.37649 -33.30757 -31.97173 -30.06837 -29.25565 -28.78325 -27.87848 -26.53574 -26.08578 -25.00769 -24.18439 -21.94516 -20.68337 -20.59303 -19.61199 -17.78815 -17.34947 -17.27638 -16.96447 -16.60362 -16.23836 -16.19682 -15.87208 -15.26556 -15.17538 -15.06034 -14.34481 -14.09073 -13.99654 -13.90923 -13.81501 -13.26389 -12.91625 -12.85546 -12.52141 -12.29534 -12.23576 -12.16747 -12.13407 -11.78218 -11.75267 -11.72854 -11.36848 -11.11979 -11.00996 -10.90444 -10.75877 -10.57768 -10.36540 -9.98057 -9.97491 -9.89735 -9.81373 -9.32370 -9.01148 -8.64403 -7.63693 -7.02320 -6.71514 -4.24920 2.79689 2.95708 3.07501 3.08355 3.10638 3.22883 3.78007 3.86278 3.95604 4.25543 4.47434 4.49347 4.57836 4.63171 4.88704 4.91811 4.94075 4.98166 5.02062 5.14145 5.20312 5.21750 5.28255 5.29587 5.38271 5.39736 5.44759 5.58654 5.62465 5.66410 5.68363 5.92260 6.06318 6.06837 6.23712 6.67480 6.74067 6.78618 6.98280 7.10884 7.12024 7.19245 7.23558 7.47275 7.56374 7.79107 7.80570 8.00968 8.21224 8.46249 8.66043 8.90449 8.99493 10.22919 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.034185 B = 0.001705 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.875258 B =16418.990849 C =16694.978798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.077 3.923 4 C 0.121 3.879 5 C -0.138 4.138 6 C 0.046 3.954 7 O -0.573 6.573 8 N -0.660 5.660 9 C 0.030 3.970 10 C 0.116 3.884 11 H 0.103 0.897 12 O -0.540 6.540 13 C 0.039 3.961 14 O -0.317 6.317 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.465 4.465 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.907 3.093 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.381 0.619 40 H 0.351 0.649 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.370 0.630 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.281 0.719 49 H 0.126 0.874 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 -13.855 -1.162 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C 0.000 4.000 4 C 0.029 3.971 5 C -0.196 4.196 6 C -0.034 4.034 7 O -0.378 6.378 8 N -0.293 5.293 9 C -0.099 4.099 10 C 0.056 3.944 11 H 0.121 0.879 12 O -0.344 6.344 13 C -0.038 4.038 14 O -0.232 6.232 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.218 4.218 18 C 0.085 3.915 19 C -0.495 4.495 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.153 4.153 28 C -0.138 4.138 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.229 0.771 40 H 0.171 0.829 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.217 0.783 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.143 0.857 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.543 -12.738 -0.296 25.029 hybrid contribution 1.465 -1.033 -1.210 2.163 sum -20.078 -13.771 -1.506 24.394 Atomic orbital electron populations 1.22715 0.80820 1.02609 1.00100 1.87778 1.19761 1.27892 1.95503 1.22322 0.92123 0.84439 1.01117 1.20885 0.93228 0.89391 0.93588 1.21814 1.01146 1.00214 0.96391 1.22919 0.98831 0.95206 0.86406 1.86369 1.85640 1.49349 1.16468 1.60410 1.05926 1.12423 1.50551 1.22616 0.88273 0.97379 1.01672 1.21820 0.91410 0.92033 0.89107 0.87903 1.86635 1.79304 1.53663 1.14839 1.23099 0.93824 0.86056 1.00833 1.85890 1.20484 1.26510 1.90352 1.18628 0.80433 0.94346 1.11783 1.20388 0.95081 0.95180 1.08080 1.20546 0.93161 0.97124 1.11017 1.17594 0.93545 0.90611 0.89708 1.19424 0.92217 0.99800 1.38027 0.90618 1.25872 1.00160 0.95437 0.92693 1.69826 1.38820 1.09591 1.24200 0.86384 0.81919 0.78240 0.80249 1.18902 1.20375 1.19118 1.20981 0.90810 0.99720 1.03745 1.19846 0.95010 0.93452 1.05469 0.94003 0.94088 0.89696 0.92290 0.92600 0.91060 0.91313 0.92367 0.93496 0.92376 0.77135 0.82919 0.90075 0.93774 0.78302 0.92927 0.92677 0.89008 0.88809 0.90849 0.85663 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.47 9.27 -35.23 -0.33 -3.80 16 3 C 0.08 0.68 4.96 37.16 0.18 0.87 16 4 C 0.12 1.06 0.61 -131.60 -0.08 0.98 16 5 C -0.14 -1.13 8.09 37.16 0.30 -0.83 16 6 C 0.05 0.38 5.32 37.15 0.20 0.58 16 7 O -0.57 -4.79 12.52 -35.23 -0.44 -5.23 16 8 N -0.66 -6.51 5.99 -99.97 -0.60 -7.11 16 9 C 0.03 0.30 4.54 -3.82 -0.02 0.28 16 10 C 0.12 1.49 3.43 -26.73 -0.09 1.40 16 11 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 12 O -0.54 -7.62 13.25 -40.08 -0.53 -8.15 16 13 C 0.04 0.61 4.36 37.16 0.16 0.77 16 14 O -0.32 -6.58 10.09 -23.58 -0.24 -6.82 16 15 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 16 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 17 C -0.20 -4.90 9.74 -39.25 -0.38 -5.29 16 18 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 19 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 20 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 21 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 22 N -0.80 -20.81 10.96 55.54 0.61 -20.20 16 23 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 28 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.54 7.68 -51.93 -0.40 0.15 16 36 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 37 H 0.05 0.38 6.68 -51.93 -0.35 0.03 16 38 H 0.06 0.48 7.54 -51.93 -0.39 0.09 16 39 H 0.38 1.79 9.12 45.56 0.42 2.21 16 40 H 0.35 3.70 8.12 -39.29 -0.32 3.38 16 41 H 0.08 0.75 6.30 -51.93 -0.33 0.42 16 42 H 0.04 0.43 6.42 -51.92 -0.33 0.10 16 43 H 0.37 4.06 9.05 45.56 0.41 4.47 16 44 H 0.05 0.77 7.64 -51.93 -0.40 0.38 16 45 H 0.06 0.81 7.66 -51.92 -0.40 0.41 16 46 H 0.09 1.78 6.27 -52.48 -0.33 1.46 16 47 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 48 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 49 H 0.13 3.38 6.16 -52.49 -0.32 3.05 16 50 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -31.13 403.07 -7.88 -39.01 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.41 Total: 13.40 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -0.99 Total: -20.89 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.01 Total: -27.31 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -1.54 Total: -24.00 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.13 -7.88 -39.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602932624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.821 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds