Wall clock time and date at job start Tue Mar 31 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99821 * 2 1 4 4 C 1.53005 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46825 * 299.99681 * 4 3 2 6 6 C 1.52992 * 109.47389 * 59.99798 * 4 3 2 7 7 O 1.42901 * 109.47319 * 65.00169 * 6 4 3 8 8 N 1.46896 * 109.46963 * 180.02562 * 4 3 2 9 9 C 1.46901 * 111.00107 * 179.97438 * 8 4 3 10 10 C 1.53000 * 109.47389 * 179.97438 * 9 8 4 11 11 H 1.08997 * 109.47610 * 305.00413 * 10 9 8 12 12 O 1.42901 * 109.46666 * 65.00368 * 10 9 8 13 13 C 1.53002 * 109.47294 * 185.00109 * 10 9 8 14 14 O 1.42894 * 109.47282 * 175.00004 * 13 10 9 15 15 C 1.35679 * 117.00173 * 180.02562 * 14 13 10 16 16 C 1.39314 * 119.81427 * 359.72681 * 15 14 13 17 17 C 1.36433 * 120.17995 * 179.76084 * 16 15 14 18 18 C 1.40835 * 119.81314 * 0.51436 * 17 16 15 19 19 C 1.41219 * 120.17899 * 179.72197 * 18 17 16 20 20 H 1.08001 * 119.99899 * 24.57034 * 19 18 17 21 21 C 1.39887 * 119.99815 * 204.57362 * 19 18 17 22 22 N 1.30876 * 120.00113 * 17.92591 * 21 19 18 23 23 Si 1.86808 * 119.99809 * 197.93235 * 21 19 18 24 24 H 1.48494 * 109.47182 * 59.99818 * 23 21 19 25 25 H 1.48497 * 109.46826 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46818 * 299.99595 * 23 21 19 27 27 C 1.40832 * 119.64074 * 359.73811 * 18 17 16 28 28 C 1.36435 * 119.81210 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.47319 * 300.00273 * 1 2 3 30 30 H 1.09006 * 109.47286 * 60.00200 * 1 2 3 31 31 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47542 * 60.00323 * 3 2 1 33 33 H 1.09000 * 109.47197 * 299.99414 * 3 2 1 34 34 H 1.09003 * 109.47326 * 300.00165 * 5 4 3 35 35 H 1.09001 * 109.47536 * 60.00170 * 5 4 3 36 36 H 1.09003 * 109.46966 * 180.02562 * 5 4 3 37 37 H 1.09002 * 109.47509 * 185.00282 * 6 4 3 38 38 H 1.09000 * 109.47123 * 305.00246 * 6 4 3 39 39 H 0.96700 * 114.00270 * 180.02562 * 7 6 4 40 40 H 1.00904 * 111.00230 * 303.95162 * 8 4 3 41 41 H 1.08997 * 109.47659 * 300.00040 * 9 8 4 42 42 H 1.09007 * 109.46797 * 60.00328 * 9 8 4 43 43 H 0.96699 * 114.00163 * 60.00272 * 12 10 9 44 44 H 1.08994 * 109.47192 * 295.00464 * 13 10 9 45 45 H 1.09008 * 109.46625 * 55.00159 * 13 10 9 46 46 H 1.08004 * 119.90685 * 0.02562 * 16 15 14 47 47 H 1.08007 * 120.09522 * 180.25574 * 17 16 15 48 48 H 0.97002 * 119.99543 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.09149 * 179.97438 * 27 18 17 50 50 H 1.07997 * 119.90603 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9873 0.4252 1.2483 6 6 3.9864 0.4256 -1.2501 7 8 3.6674 1.1913 -2.4137 8 7 4.1328 2.5266 0.0000 9 6 5.5998 2.4498 0.0000 10 6 6.1846 3.8637 0.0000 11 1 5.7788 4.4248 -0.8417 12 8 5.8405 4.5213 1.2211 13 6 7.7075 3.7857 -0.1257 14 8 8.2439 5.1050 -0.2428 15 6 9.5909 5.2137 -0.3642 16 6 10.3812 4.0665 -0.3643 17 6 11.7359 4.1669 -0.4908 18 6 12.3359 5.4354 -0.6106 19 6 13.7379 5.5486 -0.7360 20 1 14.3130 4.7243 -1.1312 21 6 14.3818 6.7284 -0.3483 22 7 13.7725 7.5783 0.4386 23 14 16.1114 7.0909 -0.9540 24 1 16.1137 7.1518 -2.4377 25 1 16.5651 8.3939 -0.4049 26 1 17.0299 6.0155 -0.5012 27 6 11.5301 6.5904 -0.6042 28 6 10.1764 6.4723 -0.4818 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.6660 0.9660 2.1385 35 1 3.5440 -0.5706 1.2484 36 1 5.0740 0.3395 1.2481 37 1 5.0632 0.2618 -1.2069 38 1 3.4743 -0.5355 -1.2960 39 1 3.9252 0.7697 -3.2449 40 1 3.7990 3.0715 -0.7810 41 1 5.9359 1.9173 0.8897 42 1 5.9358 1.9181 -0.8903 43 1 6.1699 4.0763 2.0139 44 1 8.1209 3.3026 0.7595 45 1 7.9697 3.2069 -1.0114 46 1 9.9198 3.0947 -0.2683 47 1 12.3470 3.2763 -0.4949 48 1 14.2192 8.3962 0.7077 49 1 11.9825 7.5668 -0.6952 50 1 9.5570 7.3570 -0.4763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602932624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:41 Heat of formation + Delta-G solvation = -186.892548 kcal Electronic energy + Delta-G solvation = -29250.756052 eV Core-core repulsion = 25049.282341 eV Total energy + Delta-G solvation = -4201.473711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.75178 -40.29170 -38.84284 -38.04623 -37.47236 -36.14877 -35.17543 -32.85468 -31.76563 -30.98733 -30.13448 -28.48211 -27.27222 -26.88790 -26.50140 -25.35710 -23.23192 -22.45533 -22.19311 -20.32571 -19.24755 -18.75990 -18.35195 -17.88194 -17.56075 -17.29371 -17.07218 -16.82865 -16.74341 -16.15104 -15.88434 -15.74295 -15.59850 -15.22630 -14.95729 -14.73814 -14.48495 -14.13184 -14.06534 -13.92681 -13.57266 -13.48641 -13.21763 -13.09445 -12.94964 -12.79788 -12.77574 -12.62234 -12.40984 -12.35662 -12.33193 -11.91100 -11.71592 -11.58563 -11.54605 -11.20965 -10.98321 -10.92791 -10.86148 -10.60003 -9.56078 -9.38517 -8.92203 -8.59059 -6.22425 0.95795 1.02943 1.40055 1.51089 1.55166 2.22801 2.26283 2.70217 2.74185 3.27065 3.43911 3.55766 3.70507 3.79332 3.83232 3.95894 4.04474 4.09671 4.26794 4.29186 4.33526 4.36760 4.42786 4.45856 4.50523 4.53060 4.57945 4.66891 4.70540 4.76012 4.84893 4.86431 4.91090 5.01043 5.04651 5.08051 5.22026 5.28593 5.29959 5.58970 5.64670 5.88676 5.97865 6.05941 6.16212 6.26638 6.34466 6.56952 6.78531 6.80793 6.89918 6.95359 7.10756 8.37396 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.034185 B = 0.001705 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.875258 B =16418.990849 C =16694.978798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.082 3.918 4 C 0.118 3.882 5 C -0.134 4.134 6 C 0.051 3.949 7 O -0.587 6.587 8 N -0.665 5.665 9 C 0.042 3.958 10 C 0.126 3.874 11 H 0.092 0.908 12 O -0.560 6.560 13 C 0.031 3.969 14 O -0.331 6.331 15 C 0.000 4.000 16 C -0.165 4.165 17 C -0.207 4.207 18 C 0.054 3.946 19 C -0.500 4.500 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.831 5.831 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.152 4.152 28 C -0.135 4.135 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.396 0.604 40 H 0.347 0.653 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.383 0.617 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.130 0.870 47 H 0.107 0.893 48 H 0.287 0.713 49 H 0.109 0.891 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.390 -15.520 -1.239 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.005 3.995 4 C 0.026 3.974 5 C -0.192 4.192 6 C -0.029 4.029 7 O -0.395 6.395 8 N -0.297 5.297 9 C -0.087 4.087 10 C 0.066 3.934 11 H 0.110 0.890 12 O -0.366 6.366 13 C -0.045 4.045 14 O -0.247 6.247 15 C -0.044 4.044 16 C -0.183 4.183 17 C -0.227 4.227 18 C 0.052 3.948 19 C -0.530 4.530 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.172 4.172 28 C -0.154 4.154 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.246 0.754 40 H 0.165 0.835 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.232 0.768 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.147 0.853 47 H 0.125 0.875 48 H 0.098 0.902 49 H 0.127 0.873 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.973 -14.434 -0.371 26.292 hybrid contribution 1.365 -0.592 -1.163 1.888 sum -20.608 -15.026 -1.534 25.550 Atomic orbital electron populations 1.22889 0.79563 1.03778 1.00571 1.87753 1.21195 1.27771 1.95556 1.22229 0.92282 0.84492 1.00528 1.20942 0.93178 0.88923 0.94321 1.21777 1.01502 1.00085 0.95798 1.22843 0.98999 0.94894 0.86159 1.86340 1.85872 1.49931 1.17330 1.60400 1.05802 1.13122 1.50398 1.22471 0.88294 0.95333 1.02620 1.21738 0.89652 0.93562 0.88454 0.89022 1.86604 1.79522 1.54703 1.15786 1.23483 0.95241 0.83842 1.01978 1.85882 1.18799 1.30018 1.90004 1.18696 0.81855 0.93957 1.09864 1.20698 0.94309 0.96718 1.06593 1.20802 0.94360 0.96809 1.10692 1.17962 0.94245 0.91688 0.90941 1.19695 0.92604 1.01051 1.39647 0.90485 1.26742 1.04440 0.94704 0.92162 1.69889 1.40783 1.10156 1.24994 0.85255 0.76484 0.78420 0.79549 1.18577 1.19380 1.18307 1.20893 0.91646 0.99163 1.05499 1.20010 0.94680 0.94848 1.05846 0.93368 0.93789 0.88236 0.92613 0.93422 0.91513 0.91129 0.91732 0.92978 0.92482 0.75406 0.83464 0.88807 0.93038 0.76796 0.91606 0.91351 0.85250 0.87529 0.90213 0.87295 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.65 9.27 -148.98 -1.38 -8.03 16 3 C 0.08 1.36 4.96 71.98 0.36 1.72 16 4 C 0.12 1.88 0.61 3.53 0.00 1.88 16 5 C -0.13 -1.93 8.09 71.98 0.58 -1.34 16 6 C 0.05 0.74 5.32 71.98 0.38 1.12 16 7 O -0.59 -8.86 12.52 -148.98 -1.86 -10.72 16 8 N -0.66 -11.99 5.99 -470.18 -2.82 -14.81 16 9 C 0.04 0.74 4.54 86.30 0.39 1.13 16 10 C 0.13 2.98 3.43 30.60 0.10 3.09 16 11 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 12 O -0.56 -14.87 13.25 -144.35 -1.91 -16.79 16 13 C 0.03 0.87 4.36 71.98 0.31 1.19 16 14 O -0.33 -13.26 10.09 -85.33 -0.86 -14.13 16 15 C 0.00 0.01 6.71 22.79 0.15 0.16 16 16 C -0.16 -7.18 8.96 22.11 0.20 -6.98 16 17 C -0.21 -10.12 9.74 22.48 0.22 -9.90 16 18 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 19 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 20 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 21 C 0.03 1.71 5.13 85.23 0.44 2.15 16 22 N -0.83 -44.33 10.96 21.82 0.24 -44.10 16 23 Si 0.98 38.54 29.60 68.60 2.03 40.57 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 27 C -0.15 -8.31 8.64 22.48 0.19 -8.11 16 28 C -0.13 -6.76 9.92 22.11 0.22 -6.54 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.99 7.68 -2.39 -0.02 0.97 16 36 H 0.06 0.83 6.40 -2.39 -0.02 0.82 16 37 H 0.05 0.70 6.68 -2.39 -0.02 0.69 16 38 H 0.06 0.85 7.54 -2.39 -0.02 0.83 16 39 H 0.40 3.04 9.12 -74.06 -0.68 2.36 16 40 H 0.35 6.87 8.12 -89.69 -0.73 6.14 16 41 H 0.09 1.43 6.30 -2.39 -0.02 1.41 16 42 H 0.05 0.85 6.42 -2.38 -0.02 0.83 16 43 H 0.38 7.65 9.05 -74.06 -0.67 6.98 16 44 H 0.07 1.71 7.64 -2.39 -0.02 1.70 16 45 H 0.07 1.78 7.66 -2.38 -0.02 1.76 16 46 H 0.13 4.58 6.27 -2.91 -0.02 4.56 16 47 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 48 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 49 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 50 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -67.21 403.07 -2.77 -69.98 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.10 Total: 41.07 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.90 Total: -43.04 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -2.58 Total: -58.91 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -6.02 Total: -49.67 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -67.21 -2.77 -69.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602932624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.916 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds