Wall clock time and date at job start Tue Mar 31 2020 22:30:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42904 * 113.99852 * 2 1
4 4 C 1.53004 * 109.47179 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.47043 * 59.99652 * 4 3 2
6 6 C 1.53005 * 109.47114 * 300.00136 * 4 3 2
7 7 O 1.42899 * 109.46436 * 299.99808 * 6 4 3
8 8 N 1.46890 * 109.47237 * 179.97438 * 4 3 2
9 9 C 1.46903 * 111.00191 * 180.02562 * 8 4 3
10 10 C 1.53004 * 109.47524 * 180.02562 * 9 8 4
11 11 H 1.08999 * 109.46755 * 305.00050 * 10 9 8
12 12 O 1.42895 * 109.47234 * 64.99662 * 10 9 8
13 13 C 1.52996 * 109.47311 * 184.99972 * 10 9 8
14 14 O 1.42899 * 109.47160 * 174.99724 * 13 10 9
15 15 C 1.35677 * 116.99857 * 180.02562 * 14 13 10
16 16 C 1.39309 * 119.81926 * 359.72009 * 15 14 13
17 17 C 1.36437 * 120.18507 * 179.76176 * 16 15 14
18 18 C 1.40830 * 119.80879 * 0.51531 * 17 16 15
19 19 C 1.41218 * 120.17689 * 179.71784 * 18 17 16
20 20 H 1.07999 * 120.00160 * 155.16919 * 19 18 17
21 21 C 1.39892 * 120.00189 * 335.16699 * 19 18 17
22 22 N 1.30880 * 119.99893 * 342.16502 * 21 19 18
23 23 Si 1.86795 * 120.00120 * 162.15553 * 21 19 18
24 24 H 1.48504 * 109.46996 * 94.65647 * 23 21 19
25 25 H 1.48500 * 109.47442 * 214.65770 * 23 21 19
26 26 H 1.48501 * 109.47271 * 334.65839 * 23 21 19
27 27 C 1.40831 * 119.64413 * 359.74478 * 18 17 16
28 28 C 1.36440 * 119.81043 * 359.97438 * 27 18 17
29 29 H 1.09005 * 109.46976 * 300.00082 * 1 2 3
30 30 H 1.09001 * 109.46944 * 60.00078 * 1 2 3
31 31 H 1.08998 * 109.47166 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47461 * 59.99939 * 3 2 1
33 33 H 1.09001 * 109.46783 * 299.99762 * 3 2 1
34 34 H 1.09002 * 109.46882 * 180.02562 * 5 4 3
35 35 H 1.09002 * 109.47198 * 300.00296 * 5 4 3
36 36 H 1.09000 * 109.46673 * 60.00030 * 5 4 3
37 37 H 1.09002 * 109.47241 * 59.99634 * 6 4 3
38 38 H 1.08994 * 109.46966 * 179.97438 * 6 4 3
39 39 H 0.96702 * 113.99914 * 180.02562 * 7 6 4
40 40 H 1.00901 * 111.00509 * 303.95748 * 8 4 3
41 41 H 1.08995 * 109.47102 * 59.99792 * 9 8 4
42 42 H 1.09007 * 109.47199 * 300.00376 * 9 8 4
43 43 H 0.96705 * 114.00046 * 60.00048 * 12 10 9
44 44 H 1.08997 * 109.47217 * 295.00087 * 13 10 9
45 45 H 1.09001 * 109.47124 * 54.99613 * 13 10 9
46 46 H 1.08003 * 119.90469 * 0.02780 * 16 15 14
47 47 H 1.07999 * 120.09333 * 180.25764 * 17 16 15
48 48 H 0.96999 * 120.00350 * 179.97438 * 22 21 19
49 49 H 1.08002 * 120.09304 * 179.97438 * 27 18 17
50 50 H 1.08001 * 119.90768 * 179.97438 * 28 27 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1848 0.0006
5 6 3.9875 0.4252 -1.2483
6 6 3.9865 0.4257 1.2502
7 8 3.5643 1.1351 2.4166
8 7 4.1329 2.5267 0.0000
9 6 5.5999 2.4499 0.0000
10 6 6.1848 3.8637 0.0000
11 1 5.7789 4.4247 -0.8418
12 8 5.8407 4.5215 1.2210
13 6 7.7076 3.7858 -0.1257
14 8 8.2440 5.1050 -0.2429
15 6 9.5910 5.2137 -0.3643
16 6 10.3813 4.0665 -0.3642
17 6 11.7361 4.1668 -0.4907
18 6 12.3360 5.4353 -0.6106
19 6 13.7381 5.5485 -0.7360
20 1 14.1692 6.4154 -1.2145
21 6 14.5685 4.5378 -0.2403
22 7 14.1042 3.6771 0.6296
23 14 16.3401 4.4163 -0.8200
24 1 17.2237 5.1320 0.1352
25 1 16.7411 2.9882 -0.8905
26 1 16.4640 5.0322 -2.1655
27 6 11.5302 6.5903 -0.6043
28 6 10.1764 6.4722 -0.4828
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 1.6886 1.8465 0.8900
33 1 1.6886 1.8464 -0.8900
34 1 5.0741 0.3388 -1.2476
35 1 3.5441 -0.5706 -1.2483
36 1 3.6661 0.9659 -2.1385
37 1 3.5431 -0.5701 1.2503
38 1 5.0730 0.3393 1.2504
39 1 3.8168 0.7107 3.2480
40 1 3.7996 3.0706 -0.7818
41 1 5.9359 1.9173 -0.8897
42 1 5.9360 1.9180 0.8902
43 1 6.1700 4.0765 2.0139
44 1 8.1210 3.3027 0.7596
45 1 7.9699 3.2069 -1.0113
46 1 9.9199 3.0948 -0.2681
47 1 12.3470 3.2763 -0.4946
48 1 14.6798 2.9760 0.9731
49 1 11.9827 7.5668 -0.6954
50 1 9.5570 7.3570 -0.4773
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602932633.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:52
Heat of formation + Delta-G solvation = -158.494630 kcal
Electronic energy + Delta-G solvation = -29342.089743 eV
Core-core repulsion = 25141.847458 eV
Total energy + Delta-G solvation = -4200.242285 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-39.73741 -38.91666 -37.70554 -36.97502 -36.06411 -35.42607 -33.33543 -31.89179
-29.82318 -29.56692 -28.66888 -27.81588 -26.48480 -26.17706 -25.01448 -24.15587
-21.95427 -20.90175 -20.40402 -19.65592 -17.55028 -17.39207 -17.26480 -16.91102
-16.68478 -16.15830 -16.07111 -15.91927 -15.19614 -15.10365 -14.79415 -14.31351
-14.09710 -13.96069 -13.93193 -13.74667 -13.39128 -13.15147 -12.74495 -12.58470
-12.50165 -12.39990 -12.03473 -11.92277 -11.75922 -11.72727 -11.65592 -11.43359
-11.12095 -11.01176 -10.88412 -10.73139 -10.59096 -10.15513 -9.93239 -9.92621
-9.89345 -9.76740 -9.36559 -9.01284 -8.60811 -7.65860 -7.00992 -6.73508
-4.25464 2.76359 2.96134 3.07319 3.09195 3.11676 3.21128 3.79006
3.94595 3.99857 4.20475 4.47460 4.52013 4.57370 4.61895 4.90912
4.94427 4.96431 4.99064 5.05582 5.16863 5.19537 5.21391 5.26469
5.30354 5.30895 5.39935 5.47796 5.55788 5.64633 5.64871 5.67986
5.84480 6.06824 6.09890 6.28681 6.67215 6.72934 6.79602 6.89059
7.06437 7.07680 7.27607 7.40840 7.48391 7.55791 7.83137 7.90259
7.99925 8.15307 8.44660 8.64927 8.89817 8.99062 10.21436
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.022973 B = 0.001829 C = 0.001767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.512199 B =15304.903573 C =15840.035791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.391 6.391
3 C 0.078 3.922
4 C 0.119 3.881
5 C -0.182 4.182
6 C 0.093 3.907
7 O -0.554 6.554
8 N -0.655 5.655
9 C 0.029 3.971
10 C 0.117 3.883
11 H 0.102 0.898
12 O -0.539 6.539
13 C 0.039 3.961
14 O -0.318 6.318
15 C -0.009 4.009
16 C -0.175 4.175
17 C -0.134 4.134
18 C 0.087 3.913
19 C -0.463 4.463
20 H 0.077 0.923
21 C 0.075 3.925
22 N -0.801 5.801
23 Si 0.906 3.094
24 H -0.271 1.271
25 H -0.276 1.276
26 H -0.261 1.261
27 C -0.195 4.195
28 C -0.112 4.112
29 H 0.042 0.958
30 H 0.039 0.961
31 H 0.084 0.916
32 H 0.069 0.931
33 H 0.045 0.955
34 H 0.062 0.938
35 H 0.072 0.928
36 H 0.061 0.939
37 H 0.054 0.946
38 H 0.043 0.957
39 H 0.373 0.627
40 H 0.342 0.658
41 H 0.045 0.955
42 H 0.081 0.919
43 H 0.372 0.628
44 H 0.053 0.947
45 H 0.056 0.944
46 H 0.092 0.908
47 H 0.120 0.880
48 H 0.279 0.721
49 H 0.100 0.900
50 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.221 -10.532 -0.314 23.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.309 6.309
3 C 0.001 3.999
4 C 0.027 3.973
5 C -0.241 4.241
6 C 0.014 3.986
7 O -0.358 6.358
8 N -0.287 5.287
9 C -0.100 4.100
10 C 0.057 3.943
11 H 0.120 0.880
12 O -0.343 6.343
13 C -0.038 4.038
14 O -0.233 6.233
15 C -0.053 4.053
16 C -0.194 4.194
17 C -0.154 4.154
18 C 0.084 3.916
19 C -0.493 4.493
20 H 0.095 0.905
21 C -0.142 4.142
22 N -0.427 5.427
23 Si 0.731 3.269
24 H -0.196 1.196
25 H -0.202 1.202
26 H -0.185 1.185
27 C -0.215 4.215
28 C -0.131 4.131
29 H 0.061 0.939
30 H 0.058 0.942
31 H 0.103 0.897
32 H 0.087 0.913
33 H 0.064 0.936
34 H 0.080 0.920
35 H 0.091 0.909
36 H 0.080 0.920
37 H 0.072 0.928
38 H 0.061 0.939
39 H 0.219 0.781
40 H 0.160 0.840
41 H 0.063 0.937
42 H 0.099 0.901
43 H 0.218 0.782
44 H 0.072 0.928
45 H 0.074 0.926
46 H 0.110 0.890
47 H 0.138 0.862
48 H 0.090 0.910
49 H 0.118 0.882
50 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -21.753 -9.843 -0.345 23.879
hybrid contribution 1.515 -1.366 -0.379 2.075
sum -20.238 -11.209 -0.724 23.147
Atomic orbital electron populations
1.22711 0.80846 1.02589 1.00072 1.87781 1.19736 1.27885 1.95498
1.22303 0.92043 0.84454 1.01077 1.20846 0.93288 0.89250 0.93876
1.22472 1.01917 1.02248 0.97457 1.22114 0.97352 0.93964 0.85157
1.86578 1.81430 1.52447 1.15342 1.60278 1.05895 1.12579 1.49985
1.22646 0.88119 0.97488 1.01758 1.21798 0.91359 0.91933 0.89212
0.88047 1.86622 1.79361 1.53511 1.14804 1.23109 0.93799 0.85978
1.00955 1.85866 1.20464 1.26610 1.90396 1.18604 0.80486 0.94393
1.11769 1.20588 0.95449 0.95202 1.08123 1.20923 0.92184 0.98460
1.03804 1.17598 0.93367 0.90688 0.89908 1.19465 0.90994 1.04850
1.34022 0.90497 1.25873 1.00973 0.94505 0.92813 1.69841 1.38008
1.13763 1.21109 0.86339 0.81961 0.78275 0.80367 1.19629 1.20157
1.18485 1.20609 0.92251 0.97600 1.11028 1.19625 0.94572 0.93558
1.05348 0.93938 0.94190 0.89714 0.91262 0.93635 0.91955 0.90892
0.91978 0.92796 0.93890 0.78107 0.83983 0.93721 0.90063 0.78179
0.92843 0.92632 0.88964 0.86204 0.91045 0.88187 0.88455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 11.01 101.05 1.11 1.33 16
2 O -0.39 -3.57 9.35 -35.23 -0.33 -3.90 16
3 C 0.08 0.71 4.92 37.16 0.18 0.89 16
4 C 0.12 1.07 0.58 -131.60 -0.08 0.99 16
5 C -0.18 -1.46 8.08 37.16 0.30 -1.16 16
6 C 0.09 0.83 5.43 37.16 0.20 1.03 16
7 O -0.55 -5.36 12.85 -35.23 -0.45 -5.82 16
8 N -0.66 -6.47 5.91 -99.96 -0.59 -7.06 16
9 C 0.03 0.29 4.54 -3.82 -0.02 0.28 16
10 C 0.12 1.50 3.43 -26.73 -0.09 1.41 16
11 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16
12 O -0.54 -7.81 13.25 -40.09 -0.53 -8.35 16
13 C 0.04 0.61 4.36 37.16 0.16 0.77 16
14 O -0.32 -6.56 10.09 -23.59 -0.24 -6.80 16
15 C -0.01 -0.22 6.71 -38.79 -0.26 -0.48 16
16 C -0.17 -4.10 8.96 -39.83 -0.36 -4.46 16
17 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16
18 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16
19 C -0.46 -12.33 9.04 -37.83 -0.34 -12.67 16
20 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16
21 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16
22 N -0.80 -20.73 10.97 55.54 0.61 -20.12 16
23 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16
24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16
26 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16
27 C -0.20 -4.86 9.74 -39.25 -0.38 -5.25 16
28 C -0.11 -2.66 9.92 -39.83 -0.40 -3.05 16
29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16
30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16
31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
32 H 0.07 0.72 7.68 -51.93 -0.40 0.33 16
33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.06 0.49 6.40 -51.93 -0.33 0.16 16
35 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16
36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16
38 H 0.04 0.37 6.41 -51.93 -0.33 0.03 16
39 H 0.37 2.11 9.12 45.56 0.42 2.53 16
40 H 0.34 3.14 8.72 -39.29 -0.34 2.80 16
41 H 0.04 0.42 6.30 -51.93 -0.33 0.09 16
42 H 0.08 0.82 6.31 -51.93 -0.33 0.49 16
43 H 0.37 4.39 9.05 45.56 0.41 4.80 16
44 H 0.05 0.82 7.64 -51.93 -0.40 0.42 16
45 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16
46 H 0.09 1.91 6.27 -52.48 -0.33 1.58 16
47 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16
48 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16
49 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16
50 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16
LS Contribution 403.66 15.07 6.08 6.08
Total: -1.00 -31.67 403.66 -7.88 -39.54
By element:
Atomic # 1 Polarization: 19.85 SS G_CDS: -6.41 Total: 13.44 kcal
Atomic # 6 Polarization: -19.68 SS G_CDS: -0.99 Total: -20.67 kcal
Atomic # 7 Polarization: -27.20 SS G_CDS: 0.02 Total: -27.18 kcal
Atomic # 8 Polarization: -23.31 SS G_CDS: -1.55 Total: -24.86 kcal
Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -31.67 -7.88 -39.54 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602932633.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.950 kcal
(2) G-P(sol) polarization free energy of solvation -31.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds