Wall clock time and date at job start Tue Mar 31 2020 22:30:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42904 * 113.99852 * 2 1
4 4 C 1.53004 * 109.47179 * 179.97438 * 3 2 1
5 5 C 1.53007 * 109.47043 * 59.99652 * 4 3 2
6 6 C 1.53005 * 109.47114 * 300.00136 * 4 3 2
7 7 O 1.42899 * 109.46436 * 299.99808 * 6 4 3
8 8 N 1.46890 * 109.47237 * 179.97438 * 4 3 2
9 9 C 1.46903 * 111.00191 * 180.02562 * 8 4 3
10 10 C 1.53004 * 109.47524 * 180.02562 * 9 8 4
11 11 H 1.08999 * 109.46755 * 305.00050 * 10 9 8
12 12 O 1.42895 * 109.47234 * 64.99662 * 10 9 8
13 13 C 1.52996 * 109.47311 * 184.99972 * 10 9 8
14 14 O 1.42899 * 109.47160 * 174.99724 * 13 10 9
15 15 C 1.35677 * 116.99857 * 180.02562 * 14 13 10
16 16 C 1.39309 * 119.81926 * 359.72009 * 15 14 13
17 17 C 1.36437 * 120.18507 * 179.76176 * 16 15 14
18 18 C 1.40830 * 119.80879 * 0.51531 * 17 16 15
19 19 C 1.41218 * 120.17689 * 179.71784 * 18 17 16
20 20 H 1.07999 * 120.00160 * 155.16919 * 19 18 17
21 21 C 1.39892 * 120.00189 * 335.16699 * 19 18 17
22 22 N 1.30880 * 119.99893 * 342.16502 * 21 19 18
23 23 Si 1.86795 * 120.00120 * 162.15553 * 21 19 18
24 24 H 1.48504 * 109.46996 * 94.65647 * 23 21 19
25 25 H 1.48500 * 109.47442 * 214.65770 * 23 21 19
26 26 H 1.48501 * 109.47271 * 334.65839 * 23 21 19
27 27 C 1.40831 * 119.64413 * 359.74478 * 18 17 16
28 28 C 1.36440 * 119.81043 * 359.97438 * 27 18 17
29 29 H 1.09005 * 109.46976 * 300.00082 * 1 2 3
30 30 H 1.09001 * 109.46944 * 60.00078 * 1 2 3
31 31 H 1.08998 * 109.47166 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47461 * 59.99939 * 3 2 1
33 33 H 1.09001 * 109.46783 * 299.99762 * 3 2 1
34 34 H 1.09002 * 109.46882 * 180.02562 * 5 4 3
35 35 H 1.09002 * 109.47198 * 300.00296 * 5 4 3
36 36 H 1.09000 * 109.46673 * 60.00030 * 5 4 3
37 37 H 1.09002 * 109.47241 * 59.99634 * 6 4 3
38 38 H 1.08994 * 109.46966 * 179.97438 * 6 4 3
39 39 H 0.96702 * 113.99914 * 180.02562 * 7 6 4
40 40 H 1.00901 * 111.00509 * 303.95748 * 8 4 3
41 41 H 1.08995 * 109.47102 * 59.99792 * 9 8 4
42 42 H 1.09007 * 109.47199 * 300.00376 * 9 8 4
43 43 H 0.96705 * 114.00046 * 60.00048 * 12 10 9
44 44 H 1.08997 * 109.47217 * 295.00087 * 13 10 9
45 45 H 1.09001 * 109.47124 * 54.99613 * 13 10 9
46 46 H 1.08003 * 119.90469 * 0.02780 * 16 15 14
47 47 H 1.07999 * 120.09333 * 180.25764 * 17 16 15
48 48 H 0.96999 * 120.00350 * 179.97438 * 22 21 19
49 49 H 1.08002 * 120.09304 * 179.97438 * 27 18 17
50 50 H 1.08001 * 119.90768 * 179.97438 * 28 27 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1848 0.0006
5 6 3.9875 0.4252 -1.2483
6 6 3.9865 0.4257 1.2502
7 8 3.5643 1.1351 2.4166
8 7 4.1329 2.5267 0.0000
9 6 5.5999 2.4499 0.0000
10 6 6.1848 3.8637 0.0000
11 1 5.7789 4.4247 -0.8418
12 8 5.8407 4.5215 1.2210
13 6 7.7076 3.7858 -0.1257
14 8 8.2440 5.1050 -0.2429
15 6 9.5910 5.2137 -0.3643
16 6 10.3813 4.0665 -0.3642
17 6 11.7361 4.1668 -0.4907
18 6 12.3360 5.4353 -0.6106
19 6 13.7381 5.5485 -0.7360
20 1 14.1692 6.4154 -1.2145
21 6 14.5685 4.5378 -0.2403
22 7 14.1042 3.6771 0.6296
23 14 16.3401 4.4163 -0.8200
24 1 17.2237 5.1320 0.1352
25 1 16.7411 2.9882 -0.8905
26 1 16.4640 5.0322 -2.1655
27 6 11.5302 6.5903 -0.6043
28 6 10.1764 6.4722 -0.4828
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0276 0.0005
32 1 1.6886 1.8465 0.8900
33 1 1.6886 1.8464 -0.8900
34 1 5.0741 0.3388 -1.2476
35 1 3.5441 -0.5706 -1.2483
36 1 3.6661 0.9659 -2.1385
37 1 3.5431 -0.5701 1.2503
38 1 5.0730 0.3393 1.2504
39 1 3.8168 0.7107 3.2480
40 1 3.7996 3.0706 -0.7818
41 1 5.9359 1.9173 -0.8897
42 1 5.9360 1.9180 0.8902
43 1 6.1700 4.0765 2.0139
44 1 8.1210 3.3027 0.7596
45 1 7.9699 3.2069 -1.0113
46 1 9.9199 3.0948 -0.2681
47 1 12.3470 3.2763 -0.4946
48 1 14.6798 2.9760 0.9731
49 1 11.9827 7.5668 -0.6954
50 1 9.5570 7.3570 -0.4773
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602932633.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:51
Heat of formation + Delta-G solvation = -184.031474 kcal
Electronic energy + Delta-G solvation = -29343.197104 eV
Core-core repulsion = 25141.847458 eV
Total energy + Delta-G solvation = -4201.349646 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.74190 -40.25619 -38.83738 -37.99168 -37.40909 -36.25239 -35.19955 -32.78931
-31.56064 -31.25025 -30.03559 -28.41722 -27.18020 -27.06700 -26.51072 -25.33831
-23.31021 -22.56274 -22.03619 -20.39554 -19.27221 -18.70473 -18.23067 -17.95878
-17.62098 -17.29868 -17.04211 -16.76790 -16.68331 -15.98116 -15.81484 -15.75726
-15.57243 -15.06736 -14.91412 -14.63694 -14.59744 -14.24179 -14.12214 -13.95584
-13.76626 -13.40601 -13.30187 -13.19881 -13.12556 -12.75335 -12.72415 -12.61485
-12.34493 -12.32843 -12.29397 -11.93100 -11.68879 -11.58530 -11.47647 -11.22337
-10.95535 -10.83985 -10.82637 -10.57494 -9.57100 -9.34489 -8.90732 -8.60400
-6.22579 0.93639 1.04194 1.39776 1.49400 1.55683 2.22757 2.25488
2.71173 2.72927 3.36296 3.40411 3.54887 3.70191 3.78033 3.82690
3.96176 4.04041 4.08026 4.27940 4.29300 4.35133 4.38397 4.41532
4.48119 4.51758 4.54561 4.57321 4.60986 4.67066 4.74795 4.83400
4.86939 4.88914 4.96595 5.00803 5.07106 5.15197 5.20976 5.36810
5.52121 5.66101 5.96638 5.97580 6.06150 6.16743 6.23768 6.36693
6.56122 6.78895 6.87768 6.95154 6.97072 7.10313 8.36717
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.022973 B = 0.001829 C = 0.001767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.512199 B =15304.903573 C =15840.035791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.405 6.405
3 C 0.083 3.917
4 C 0.117 3.883
5 C -0.176 4.176
6 C 0.093 3.907
7 O -0.573 6.573
8 N -0.664 5.664
9 C 0.042 3.958
10 C 0.127 3.873
11 H 0.099 0.901
12 O -0.558 6.558
13 C 0.031 3.969
14 O -0.328 6.328
15 C -0.001 4.001
16 C -0.175 4.175
17 C -0.154 4.154
18 C 0.053 3.947
19 C -0.500 4.500
20 H 0.075 0.925
21 C 0.034 3.966
22 N -0.831 5.831
23 Si 0.981 3.019
24 H -0.264 1.264
25 H -0.266 1.266
26 H -0.260 1.260
27 C -0.205 4.205
28 C -0.123 4.123
29 H 0.043 0.957
30 H 0.049 0.951
31 H 0.099 0.901
32 H 0.051 0.949
33 H 0.053 0.947
34 H 0.064 0.936
35 H 0.071 0.929
36 H 0.066 0.934
37 H 0.055 0.945
38 H 0.048 0.952
39 H 0.388 0.612
40 H 0.345 0.655
41 H 0.058 0.942
42 H 0.084 0.916
43 H 0.382 0.618
44 H 0.059 0.941
45 H 0.067 0.933
46 H 0.119 0.881
47 H 0.107 0.893
48 H 0.287 0.713
49 H 0.109 0.891
50 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.817 -11.515 -0.698 24.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.323 6.323
3 C 0.006 3.994
4 C 0.026 3.974
5 C -0.235 4.235
6 C 0.014 3.986
7 O -0.380 6.380
8 N -0.296 5.296
9 C -0.088 4.088
10 C 0.067 3.933
11 H 0.117 0.883
12 O -0.364 6.364
13 C -0.045 4.045
14 O -0.244 6.244
15 C -0.045 4.045
16 C -0.194 4.194
17 C -0.174 4.174
18 C 0.051 3.949
19 C -0.530 4.530
20 H 0.093 0.907
21 C -0.179 4.179
22 N -0.458 5.458
23 Si 0.802 3.198
24 H -0.189 1.189
25 H -0.191 1.191
26 H -0.183 1.183
27 C -0.224 4.224
28 C -0.142 4.142
29 H 0.061 0.939
30 H 0.067 0.933
31 H 0.117 0.883
32 H 0.070 0.930
33 H 0.072 0.928
34 H 0.083 0.917
35 H 0.090 0.910
36 H 0.085 0.915
37 H 0.073 0.927
38 H 0.066 0.934
39 H 0.236 0.764
40 H 0.164 0.836
41 H 0.076 0.924
42 H 0.102 0.898
43 H 0.230 0.770
44 H 0.077 0.923
45 H 0.086 0.914
46 H 0.137 0.863
47 H 0.125 0.875
48 H 0.098 0.902
49 H 0.127 0.873
50 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -22.379 -10.837 -0.711 24.875
hybrid contribution 1.487 -1.074 -0.199 1.845
sum -20.892 -11.911 -0.910 24.066
Atomic orbital electron populations
1.22883 0.79578 1.03737 1.00563 1.87757 1.21189 1.27838 1.95561
1.22207 0.92143 0.84477 1.00562 1.20888 0.93259 0.88854 0.94427
1.22410 1.01960 1.02028 0.97092 1.22134 0.97563 0.93886 0.84987
1.86537 1.81768 1.53249 1.16403 1.60232 1.05655 1.13326 1.50418
1.22474 0.88291 0.95499 1.02513 1.21752 0.89378 0.93518 0.88651
0.88302 1.86590 1.79545 1.54539 1.15742 1.23465 0.95423 0.83922
1.01708 1.85864 1.18732 1.29790 1.90014 1.18719 0.81798 0.94094
1.09842 1.20801 0.94626 0.96732 1.07211 1.20907 0.93214 0.97816
1.05431 1.17966 0.94159 0.91661 0.91104 1.19714 0.91595 1.06040
1.35631 0.90664 1.26713 1.05320 0.93637 0.92273 1.69886 1.39898
1.14335 1.21723 0.85213 0.76217 0.78670 0.79720 1.18867 1.19063
1.18337 1.20799 0.92934 0.97643 1.11065 1.19900 0.94433 0.94805
1.05036 0.93862 0.93281 0.88304 0.93039 0.92840 0.91726 0.91046
0.91484 0.92702 0.93434 0.76357 0.83599 0.92448 0.89774 0.77003
0.92309 0.91439 0.86295 0.87504 0.90243 0.87305 0.86509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 11.01 113.37 1.25 1.58 16
2 O -0.40 -6.88 9.35 -148.98 -1.39 -8.28 16
3 C 0.08 1.41 4.92 71.98 0.35 1.76 16
4 C 0.12 1.92 0.58 3.53 0.00 1.92 16
5 C -0.18 -2.48 8.08 71.98 0.58 -1.90 16
6 C 0.09 1.52 5.43 71.98 0.39 1.91 16
7 O -0.57 -10.44 12.85 -148.98 -1.91 -12.35 16
8 N -0.66 -11.96 5.91 -470.16 -2.78 -14.74 16
9 C 0.04 0.75 4.54 86.30 0.39 1.14 16
10 C 0.13 3.02 3.43 30.59 0.10 3.13 16
11 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16
12 O -0.56 -15.35 13.25 -144.34 -1.91 -17.26 16
13 C 0.03 0.91 4.36 71.98 0.31 1.23 16
14 O -0.33 -13.05 10.09 -85.31 -0.86 -13.91 16
15 C 0.00 -0.03 6.71 22.79 0.15 0.12 16
16 C -0.17 -8.11 8.96 22.11 0.20 -7.91 16
17 C -0.15 -8.13 8.64 22.48 0.19 -7.93 16
18 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16
19 C -0.50 -27.22 9.04 23.40 0.21 -27.01 16
20 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16
21 C 0.03 1.74 5.13 85.24 0.44 2.18 16
22 N -0.83 -43.54 10.97 21.82 0.24 -43.31 16
23 Si 0.98 38.27 29.59 68.60 2.03 40.30 16
24 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16
25 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16
26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16
27 C -0.20 -10.33 9.74 22.48 0.22 -10.11 16
28 C -0.12 -5.78 9.92 22.11 0.22 -5.56 16
29 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16
30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16
33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.06 0.88 6.40 -2.39 -0.02 0.86 16
35 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16
36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
37 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16
38 H 0.05 0.72 6.41 -2.39 -0.02 0.71 16
39 H 0.39 3.97 9.12 -74.06 -0.68 3.29 16
40 H 0.34 5.75 8.72 -89.69 -0.78 4.97 16
41 H 0.06 0.91 6.30 -2.39 -0.02 0.89 16
42 H 0.08 1.49 6.31 -2.38 -0.02 1.48 16
43 H 0.38 8.47 9.05 -74.05 -0.67 7.80 16
44 H 0.06 1.67 7.64 -2.39 -0.02 1.66 16
45 H 0.07 1.84 7.66 -2.39 -0.02 1.82 16
46 H 0.12 4.73 6.27 -2.91 -0.02 4.71 16
47 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16
48 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16
49 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16
50 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16
Total: -1.00 -67.63 403.66 -2.84 -70.47
By element:
Atomic # 1 Polarization: 42.87 SS G_CDS: -1.15 Total: 41.72 kcal
Atomic # 6 Polarization: -47.56 SS G_CDS: 4.90 Total: -42.66 kcal
Atomic # 7 Polarization: -55.50 SS G_CDS: -2.54 Total: -58.04 kcal
Atomic # 8 Polarization: -45.71 SS G_CDS: -6.08 Total: -51.79 kcal
Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal
Total: -67.63 -2.84 -70.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602932633.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -113.561 kcal
(2) G-P(sol) polarization free energy of solvation -67.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.195 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal
(6) G-S(sol) free energy of system = (1) + (5) -184.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds