Wall clock time and date at job start Tue Mar 31 2020 23:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99564 * 2 1 4 4 C 1.53001 * 109.46789 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47176 * 63.24987 * 4 3 2 6 6 C 1.46896 * 110.99986 * 72.09371 * 5 4 3 7 7 C 1.50702 * 109.47293 * 66.63577 * 6 5 4 8 8 H 1.08002 * 119.99955 * 4.58338 * 7 6 5 9 9 C 1.37875 * 120.00157 * 184.58028 * 7 6 5 10 10 N 1.31517 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46773 * 60.00131 * 11 9 7 13 13 H 1.48501 * 109.47070 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46900 * 300.00243 * 11 9 7 15 15 C 1.46902 * 110.99414 * 196.04471 * 5 4 3 16 16 C 1.53008 * 109.46663 * 162.94354 * 15 5 4 17 17 H 1.09002 * 109.47121 * 304.28955 * 16 15 5 18 18 O 1.42898 * 109.47145 * 64.28663 * 16 15 5 19 19 C 1.50700 * 109.47113 * 184.28609 * 16 15 5 20 20 C 1.38150 * 120.00050 * 264.72656 * 19 16 15 21 21 C 1.38676 * 119.99996 * 179.72564 * 20 19 16 22 22 O 1.35985 * 120.00020 * 180.27746 * 21 20 19 23 23 C 1.42905 * 116.99754 * 180.27389 * 22 21 20 24 24 C 1.38718 * 119.99808 * 0.54865 * 21 20 19 25 25 C 1.38105 * 120.00065 * 359.72374 * 24 21 20 26 26 C 1.38677 * 120.00143 * 85.00118 * 19 16 15 27 27 O 1.35990 * 119.99551 * 359.97438 * 26 19 16 28 28 C 1.42905 * 116.99609 * 180.02562 * 27 26 19 29 29 H 1.09001 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47361 * 299.99689 * 1 2 3 31 31 H 1.08996 * 109.47227 * 60.00350 * 1 2 3 32 32 H 1.08996 * 109.46899 * 60.00107 * 3 2 1 33 33 H 1.08995 * 109.46943 * 299.99751 * 3 2 1 34 34 H 1.09000 * 109.47273 * 303.24599 * 4 3 2 35 35 H 1.09003 * 109.46925 * 183.25107 * 4 3 2 36 36 H 1.08997 * 109.47118 * 186.63736 * 6 5 4 37 37 H 1.08999 * 109.46901 * 306.63562 * 6 5 4 38 38 H 0.96996 * 120.00382 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.47725 * 42.94801 * 15 5 4 40 40 H 1.08992 * 109.47681 * 282.93879 * 15 5 4 41 41 H 0.96700 * 114.00367 * 59.99856 * 18 16 15 42 42 H 1.08003 * 120.00022 * 359.97438 * 20 19 16 43 43 H 1.08999 * 109.47324 * 299.99563 * 23 22 21 44 44 H 1.09005 * 109.47116 * 59.99914 * 23 22 21 45 45 H 1.09003 * 109.46778 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99788 * 179.71005 * 24 21 20 47 47 H 1.08002 * 120.00294 * 179.97438 * 25 24 21 48 48 H 1.09003 * 109.47279 * 300.00026 * 28 27 26 49 49 H 1.08999 * 109.46793 * 59.99917 * 28 27 26 50 50 H 1.09000 * 109.46828 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9738 0.5249 -1.2377 6 6 3.8213 1.4185 -2.3936 7 6 4.7761 2.5771 -2.2623 8 1 5.4819 2.6052 -1.4453 9 6 4.7487 3.6010 -3.1852 10 7 3.8890 3.5670 -4.1798 11 14 5.9318 5.0374 -3.0220 12 1 7.3287 4.5374 -3.0824 13 1 5.7007 5.9974 -4.1312 14 1 5.7059 5.7195 -1.7225 15 6 5.3588 0.0500 -1.1185 16 6 5.6416 -0.9781 -2.2158 17 1 4.9097 -1.7837 -2.1563 18 8 5.5519 -0.3468 -3.4946 19 6 7.0264 -1.5428 -2.0304 20 6 8.0911 -1.0040 -2.7265 21 6 9.3663 -1.5199 -2.5516 22 8 10.4152 -0.9858 -3.2325 23 6 11.6997 -1.5707 -3.0083 24 6 9.5711 -2.5845 -1.6861 25 6 8.5058 -3.1268 -0.9944 26 6 7.2311 -2.6071 -1.1652 27 8 6.1823 -3.1408 -0.4838 28 6 6.4660 -4.2349 0.3907 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8535 0.5943 0.8586 35 1 3.9786 2.1789 0.0576 36 1 4.0405 0.8691 -3.3090 37 1 2.7984 1.7932 -2.4307 38 1 3.8694 4.2875 -4.8289 39 1 5.5016 -0.4125 -0.1419 40 1 6.0423 0.8923 -1.2251 41 1 6.1759 0.3815 -3.6184 42 1 7.9309 -0.1782 -3.4040 43 1 11.9600 -1.4825 -1.9535 44 1 11.6736 -2.6235 -3.2894 45 1 12.4452 -1.0523 -3.6114 46 1 10.5635 -2.9893 -1.5534 47 1 8.6651 -3.9560 -0.3209 48 1 6.8916 -5.0580 -0.1834 49 1 7.1782 -3.9163 1.1518 50 1 5.5445 -4.5651 0.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744405139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:47 Heat of formation + Delta-G solvation = -125.511843 kcal Electronic energy + Delta-G solvation = -31160.548486 eV Core-core repulsion = 26961.736442 eV Total energy + Delta-G solvation = -4198.812044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53144 -38.94006 -38.04326 -37.16590 -36.04343 -34.87129 -32.39680 -31.42203 -30.08400 -29.30750 -27.78490 -27.29135 -26.87308 -26.06226 -25.14979 -23.28812 -22.39440 -21.90511 -20.59973 -19.53667 -18.29165 -17.51349 -16.84702 -16.45108 -15.88593 -15.83813 -15.70821 -15.50089 -15.27161 -14.94685 -14.71421 -14.54546 -14.28429 -14.22869 -13.95400 -13.47523 -13.22821 -12.81958 -12.65317 -12.62122 -12.39084 -12.20662 -11.73368 -11.70001 -11.62295 -11.41149 -11.31959 -10.97691 -10.95108 -10.83499 -10.66796 -10.53656 -10.36778 -10.23341 -10.22804 -9.84304 -9.46862 -9.05271 -8.96955 -8.71146 -8.21631 -7.62703 -6.93884 -5.92147 -4.01226 1.30487 1.54742 3.26359 3.31196 3.37360 3.39216 3.42926 3.76859 4.43604 4.45769 4.66162 4.71870 4.94954 5.00487 5.03204 5.06459 5.12211 5.13622 5.33405 5.36135 5.40903 5.46677 5.51157 5.59613 5.62272 5.73213 5.86103 5.88403 5.94640 5.96814 5.99981 6.01681 6.19331 6.27107 6.32912 6.36387 6.51453 6.59616 6.66099 6.72197 6.98324 7.32482 7.46841 7.54893 7.72906 7.79888 8.14146 8.25787 8.43534 8.48445 8.53964 9.12799 9.63744 11.11189 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.008214 B = 0.004563 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3408.036178 B = 6134.969457 C = 8927.414920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.071 3.929 4 C 0.062 3.938 5 N -0.524 5.524 6 C 0.169 3.831 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.280 1.280 15 C 0.040 3.960 16 C 0.166 3.834 17 H 0.112 0.888 18 O -0.539 6.539 19 C -0.093 4.093 20 C -0.102 4.102 21 C 0.092 3.908 22 O -0.316 6.316 23 C 0.030 3.970 24 C -0.178 4.178 25 C -0.172 4.172 26 C 0.100 3.900 27 O -0.306 6.306 28 C 0.029 3.971 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.376 0.624 42 H 0.141 0.859 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.661 -13.562 8.161 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.006 4.006 4 C -0.066 4.066 5 N -0.248 5.248 6 C 0.044 3.956 7 C -0.588 4.588 8 H 0.070 0.930 9 C -0.134 4.134 10 N -0.524 5.524 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.206 1.206 15 C -0.089 4.089 16 C 0.106 3.894 17 H 0.130 0.870 18 O -0.345 6.345 19 C -0.094 4.094 20 C -0.121 4.121 21 C 0.048 3.952 22 O -0.230 6.230 23 C -0.066 4.066 24 C -0.197 4.197 25 C -0.191 4.191 26 C 0.055 3.945 27 O -0.219 6.219 28 C -0.066 4.066 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.159 0.841 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.115 0.885 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.727 -14.262 7.692 17.952 hybrid contribution 1.919 1.936 0.658 2.804 sum 9.647 -12.327 8.350 17.740 Atomic orbital electron populations 1.22630 0.82938 1.01714 0.99197 1.87984 1.17847 1.28284 1.95177 1.22594 0.94507 0.84153 0.99334 1.21944 0.92670 0.98551 0.93452 1.62422 1.18730 1.39861 1.03746 1.20201 0.96234 0.89534 0.89643 1.21737 1.19674 1.06535 1.10827 0.92969 1.24899 0.95415 0.97736 0.95381 1.69944 1.35576 1.32878 1.13996 0.86862 0.81894 0.82962 0.77481 1.20280 1.21342 1.20597 1.22519 0.92222 0.97087 0.97068 1.20577 0.89778 0.94708 0.84291 0.87042 1.86622 1.63121 1.51621 1.33175 1.20048 0.97904 0.95136 0.96348 1.20088 0.88654 1.01653 1.01678 1.18824 0.87901 0.94302 0.94188 1.86112 1.15351 1.57440 1.64115 1.22990 0.83130 0.98773 1.01686 1.20908 0.99461 0.98781 1.00501 1.20921 0.91847 1.02731 1.03619 1.18652 0.86520 0.94565 0.94809 1.86183 1.31899 1.47860 1.55986 1.23004 1.03006 0.87975 0.92635 0.90480 0.95228 0.94447 0.94631 0.92486 0.92667 0.92513 0.91409 0.95700 0.92934 0.92433 0.93172 0.77464 0.84109 0.92974 0.92986 0.88479 0.85616 0.85446 0.93113 0.93070 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.09 10.62 -35.23 -0.37 -7.46 16 3 C 0.07 1.35 6.08 37.16 0.23 1.57 16 4 C 0.06 1.26 5.24 -3.82 -0.02 1.24 16 5 N -0.52 -11.55 4.54 -236.07 -1.07 -12.62 16 6 C 0.17 4.31 4.59 -4.98 -0.02 4.29 16 7 C -0.55 -14.47 7.27 -34.44 -0.25 -14.72 16 8 H 0.05 1.37 6.01 -52.49 -0.32 1.06 16 9 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 10 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 11 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.04 0.80 4.59 -3.82 -0.02 0.78 16 16 C 0.17 3.15 3.15 -27.88 -0.09 3.06 16 17 H 0.11 2.23 7.69 -51.93 -0.40 1.83 16 18 O -0.54 -11.24 9.90 -35.23 -0.35 -11.59 16 19 C -0.09 -1.54 5.08 -104.49 -0.53 -2.07 16 20 C -0.10 -1.65 9.24 -39.45 -0.36 -2.01 16 21 C 0.09 1.34 6.69 -39.24 -0.26 1.08 16 22 O -0.32 -4.35 10.50 -19.69 -0.21 -4.55 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 C -0.18 -2.20 9.03 -39.45 -0.36 -2.56 16 25 C -0.17 -2.15 9.03 -39.45 -0.36 -2.51 16 26 C 0.10 1.49 6.66 -39.24 -0.26 1.23 16 27 O -0.31 -4.40 9.63 -19.71 -0.19 -4.59 16 28 C 0.03 0.28 9.81 101.05 0.99 1.27 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.20 6.54 -51.93 -0.34 0.86 16 34 H 0.05 1.03 7.71 -51.93 -0.40 0.63 16 35 H 0.06 1.22 6.76 -51.93 -0.35 0.87 16 36 H 0.07 1.87 5.42 -51.93 -0.28 1.58 16 37 H 0.02 0.70 6.44 -51.93 -0.33 0.37 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 40 H 0.05 1.08 5.87 -51.93 -0.31 0.78 16 41 H 0.38 7.55 7.33 45.56 0.33 7.88 16 42 H 0.14 2.29 6.40 -52.48 -0.34 1.95 16 43 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 44 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 47 H 0.13 1.22 6.29 -52.49 -0.33 0.89 16 48 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 49 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 50 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -31.94 396.32 -6.86 -38.80 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.05 Total: 9.64 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 0.69 Total: -4.75 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.33 Total: -37.52 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.12 Total: -28.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.94 -6.86 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744405139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.707 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds