Wall clock time and date at job start Tue Mar 31 2020 23:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99564 * 2 1 4 4 C 1.53001 * 109.46789 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47176 * 63.24987 * 4 3 2 6 6 C 1.46896 * 110.99986 * 72.09371 * 5 4 3 7 7 C 1.50702 * 109.47293 * 66.63577 * 6 5 4 8 8 H 1.08002 * 119.99955 * 4.58338 * 7 6 5 9 9 C 1.37875 * 120.00157 * 184.58028 * 7 6 5 10 10 N 1.31517 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46773 * 60.00131 * 11 9 7 13 13 H 1.48501 * 109.47070 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46900 * 300.00243 * 11 9 7 15 15 C 1.46902 * 110.99414 * 196.04471 * 5 4 3 16 16 C 1.53008 * 109.46663 * 162.94354 * 15 5 4 17 17 H 1.09002 * 109.47121 * 304.28955 * 16 15 5 18 18 O 1.42898 * 109.47145 * 64.28663 * 16 15 5 19 19 C 1.50700 * 109.47113 * 184.28609 * 16 15 5 20 20 C 1.38150 * 120.00050 * 264.72656 * 19 16 15 21 21 C 1.38676 * 119.99996 * 179.72564 * 20 19 16 22 22 O 1.35985 * 120.00020 * 180.27746 * 21 20 19 23 23 C 1.42905 * 116.99754 * 180.27389 * 22 21 20 24 24 C 1.38718 * 119.99808 * 0.54865 * 21 20 19 25 25 C 1.38105 * 120.00065 * 359.72374 * 24 21 20 26 26 C 1.38677 * 120.00143 * 85.00118 * 19 16 15 27 27 O 1.35990 * 119.99551 * 359.97438 * 26 19 16 28 28 C 1.42905 * 116.99609 * 180.02562 * 27 26 19 29 29 H 1.09001 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47361 * 299.99689 * 1 2 3 31 31 H 1.08996 * 109.47227 * 60.00350 * 1 2 3 32 32 H 1.08996 * 109.46899 * 60.00107 * 3 2 1 33 33 H 1.08995 * 109.46943 * 299.99751 * 3 2 1 34 34 H 1.09000 * 109.47273 * 303.24599 * 4 3 2 35 35 H 1.09003 * 109.46925 * 183.25107 * 4 3 2 36 36 H 1.08997 * 109.47118 * 186.63736 * 6 5 4 37 37 H 1.08999 * 109.46901 * 306.63562 * 6 5 4 38 38 H 0.96996 * 120.00382 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.47725 * 42.94801 * 15 5 4 40 40 H 1.08992 * 109.47681 * 282.93879 * 15 5 4 41 41 H 0.96700 * 114.00367 * 59.99856 * 18 16 15 42 42 H 1.08003 * 120.00022 * 359.97438 * 20 19 16 43 43 H 1.08999 * 109.47324 * 299.99563 * 23 22 21 44 44 H 1.09005 * 109.47116 * 59.99914 * 23 22 21 45 45 H 1.09003 * 109.46778 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99788 * 179.71005 * 24 21 20 47 47 H 1.08002 * 120.00294 * 179.97438 * 25 24 21 48 48 H 1.09003 * 109.47279 * 300.00026 * 28 27 26 49 49 H 1.08999 * 109.46793 * 59.99917 * 28 27 26 50 50 H 1.09000 * 109.46828 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9738 0.5249 -1.2377 6 6 3.8213 1.4185 -2.3936 7 6 4.7761 2.5771 -2.2623 8 1 5.4819 2.6052 -1.4453 9 6 4.7487 3.6010 -3.1852 10 7 3.8890 3.5670 -4.1798 11 14 5.9318 5.0374 -3.0220 12 1 7.3287 4.5374 -3.0824 13 1 5.7007 5.9974 -4.1312 14 1 5.7059 5.7195 -1.7225 15 6 5.3588 0.0500 -1.1185 16 6 5.6416 -0.9781 -2.2158 17 1 4.9097 -1.7837 -2.1563 18 8 5.5519 -0.3468 -3.4946 19 6 7.0264 -1.5428 -2.0304 20 6 8.0911 -1.0040 -2.7265 21 6 9.3663 -1.5199 -2.5516 22 8 10.4152 -0.9858 -3.2325 23 6 11.6997 -1.5707 -3.0083 24 6 9.5711 -2.5845 -1.6861 25 6 8.5058 -3.1268 -0.9944 26 6 7.2311 -2.6071 -1.1652 27 8 6.1823 -3.1408 -0.4838 28 6 6.4660 -4.2349 0.3907 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8535 0.5943 0.8586 35 1 3.9786 2.1789 0.0576 36 1 4.0405 0.8691 -3.3090 37 1 2.7984 1.7932 -2.4307 38 1 3.8694 4.2875 -4.8289 39 1 5.5016 -0.4125 -0.1419 40 1 6.0423 0.8923 -1.2251 41 1 6.1759 0.3815 -3.6184 42 1 7.9309 -0.1782 -3.4040 43 1 11.9600 -1.4825 -1.9535 44 1 11.6736 -2.6235 -3.2894 45 1 12.4452 -1.0523 -3.6114 46 1 10.5635 -2.9893 -1.5534 47 1 8.6651 -3.9560 -0.3209 48 1 6.8916 -5.0580 -0.1834 49 1 7.1782 -3.9163 1.1518 50 1 5.5445 -4.5651 0.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744405139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:46 Heat of formation + Delta-G solvation = -149.818581 kcal Electronic energy + Delta-G solvation = -31161.602505 eV Core-core repulsion = 26961.736442 eV Total energy + Delta-G solvation = -4199.866063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60970 -39.95805 -39.56991 -38.55870 -37.31467 -36.40039 -34.47656 -32.69487 -31.25866 -30.68391 -29.42243 -28.22294 -27.70379 -27.52375 -26.65531 -25.10590 -23.82891 -22.96561 -21.88734 -21.35987 -19.40632 -18.53176 -18.49025 -17.86317 -17.37174 -17.22221 -16.86992 -16.73618 -16.60234 -16.36260 -16.03029 -15.92737 -15.63621 -15.50567 -15.26747 -14.84789 -14.75754 -14.31303 -13.91576 -13.66622 -13.61808 -13.38232 -13.25958 -13.07739 -12.89382 -12.70219 -12.61494 -12.58795 -12.42561 -12.34660 -12.16141 -12.09280 -11.92593 -11.75289 -11.68391 -11.38446 -11.27956 -10.78341 -10.43035 -10.27031 -9.89587 -8.83018 -8.66111 -8.01991 -6.20671 0.21081 0.47152 1.39846 1.40705 1.48030 2.36900 2.42727 2.51736 2.66949 3.05261 3.21235 3.32428 3.63734 3.77592 3.81963 4.15688 4.25417 4.26445 4.30557 4.32913 4.39577 4.43305 4.45460 4.47253 4.48795 4.54327 4.59996 4.62811 4.67078 4.74049 4.78738 4.81626 4.86716 4.89059 4.95866 5.01169 5.03476 5.23639 5.28729 5.40360 5.43041 5.59626 5.63171 6.01500 6.19553 6.35778 6.39536 6.47251 6.58056 6.68097 6.87795 7.02959 7.48583 8.98373 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.008214 B = 0.004563 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3408.036178 B = 6134.969457 C = 8927.414920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.078 3.922 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.190 3.810 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.019 3.981 10 N -0.922 5.922 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.050 3.950 16 C 0.175 3.825 17 H 0.096 0.904 18 O -0.557 6.557 19 C -0.115 4.115 20 C -0.124 4.124 21 C 0.084 3.916 22 O -0.341 6.341 23 C 0.018 3.982 24 C -0.165 4.165 25 C -0.162 4.162 26 C 0.093 3.907 27 O -0.332 6.332 28 C 0.019 3.981 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.044 0.956 37 H -0.008 1.008 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.375 0.625 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -15.093 10.423 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.001 3.999 4 C -0.067 4.067 5 N -0.253 5.253 6 C 0.064 3.936 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.180 4.180 10 N -0.562 5.562 11 Si 0.771 3.229 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.078 4.078 16 C 0.115 3.885 17 H 0.114 0.886 18 O -0.364 6.364 19 C -0.117 4.117 20 C -0.142 4.142 21 C 0.039 3.961 22 O -0.256 6.256 23 C -0.076 4.076 24 C -0.183 4.183 25 C -0.181 4.181 26 C 0.048 3.952 27 O -0.246 6.246 28 C -0.076 4.076 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.224 0.776 42 H 0.141 0.859 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.132 0.868 46 H 0.180 0.820 47 H 0.182 0.818 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.897 -15.815 9.980 21.158 hybrid contribution 1.256 2.274 0.012 2.598 sum 11.153 -13.541 9.992 20.188 Atomic orbital electron populations 1.22859 0.80666 1.03432 1.00024 1.87928 1.20379 1.28000 1.95332 1.22451 0.93694 0.84472 0.99291 1.22007 0.93728 0.97899 0.93090 1.62373 1.20189 1.39087 1.03633 1.19765 0.94085 0.89479 0.90295 1.21879 1.19311 1.06633 1.10491 0.92855 1.25641 0.96957 1.00379 0.95048 1.70081 1.37382 1.33825 1.14934 0.85818 0.79940 0.79678 0.77462 1.19527 1.21251 1.19952 1.22471 0.90419 0.96709 0.98236 1.20390 0.91483 0.93670 0.82951 0.88608 1.86577 1.63461 1.51769 1.34564 1.19741 0.96340 0.96981 0.98613 1.20034 0.89976 1.02029 1.02197 1.18896 0.87520 0.94911 0.94769 1.86083 1.16752 1.58394 1.64329 1.23339 0.81233 0.99852 1.03160 1.21311 1.01134 0.97232 0.98618 1.21302 0.90507 1.02940 1.03316 1.18735 0.87775 0.94184 0.94544 1.86149 1.32474 1.49359 1.56662 1.23334 1.04484 0.87158 0.92587 0.88389 0.92826 0.95124 0.91584 0.95518 0.90599 0.93955 0.93828 0.98952 0.93007 0.91055 0.94908 0.77600 0.85852 0.91501 0.91374 0.86802 0.81998 0.81829 0.91388 0.91410 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -14.93 10.62 -148.98 -1.58 -16.51 16 3 C 0.08 2.98 6.08 71.98 0.44 3.41 16 4 C 0.06 2.50 5.24 86.30 0.45 2.95 16 5 N -0.53 -24.22 4.54 -900.79 -4.09 -28.31 16 6 C 0.19 10.22 4.59 85.56 0.39 10.62 16 7 C -0.54 -29.74 7.27 25.60 0.19 -29.56 16 8 H 0.05 2.87 6.01 -2.91 -0.02 2.85 16 9 C 0.02 1.07 5.46 84.65 0.46 1.54 16 10 N -0.92 -55.35 13.29 21.45 0.28 -55.06 16 11 Si 0.94 44.07 29.54 68.60 2.03 46.09 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 15 C 0.05 2.08 4.59 86.31 0.40 2.48 16 16 C 0.17 6.96 3.15 29.85 0.09 7.05 16 17 H 0.10 4.06 7.69 -2.39 -0.02 4.04 16 18 O -0.56 -25.02 9.90 -148.98 -1.47 -26.49 16 19 C -0.12 -3.93 5.08 -19.78 -0.10 -4.03 16 20 C -0.12 -4.13 9.24 22.35 0.21 -3.92 16 21 C 0.08 2.35 6.69 22.49 0.15 2.51 16 22 O -0.34 -9.00 10.50 -93.38 -0.98 -9.98 16 23 C 0.02 0.27 9.81 113.37 1.11 1.39 16 24 C -0.16 -3.55 9.03 22.35 0.20 -3.35 16 25 C -0.16 -3.53 9.03 22.35 0.20 -3.33 16 26 C 0.09 2.67 6.66 22.49 0.15 2.82 16 27 O -0.33 -9.16 9.63 -93.44 -0.90 -10.06 16 28 C 0.02 0.30 9.81 113.37 1.11 1.41 16 29 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.03 1.17 6.54 -2.39 -0.02 1.16 16 34 H 0.08 2.77 7.71 -2.39 -0.02 2.75 16 35 H 0.04 1.85 6.76 -2.39 -0.02 1.83 16 36 H 0.04 2.57 5.42 -2.39 -0.01 2.56 16 37 H -0.01 -0.46 6.44 -2.39 -0.02 -0.47 16 38 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.07 2.72 7.70 -2.39 -0.02 2.71 16 40 H 0.03 1.47 5.87 -2.39 -0.01 1.46 16 41 H 0.37 16.49 7.33 -74.06 -0.54 15.95 16 42 H 0.12 4.37 6.40 -2.91 -0.02 4.35 16 43 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 44 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.16 2.27 6.29 -2.91 -0.02 2.25 16 47 H 0.16 2.32 6.29 -2.91 -0.02 2.30 16 48 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 49 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 50 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.21 396.32 0.41 -71.80 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.42 Total: 34.54 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.70 Total: -6.02 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -3.80 Total: -83.37 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -4.94 Total: -63.04 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.21 0.41 -71.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744405139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.019 kcal (2) G-P(sol) polarization free energy of solvation -72.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds