Wall clock time and date at job start Tue Mar 31 2020 22:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47547 * 2 1 4 4 C 1.52997 * 109.47225 * 239.99488 * 2 1 3 5 5 C 1.53003 * 109.47145 * 175.00374 * 4 2 1 6 6 N 1.46902 * 109.46749 * 180.02562 * 5 4 2 7 7 C 1.46899 * 110.99504 * 169.99733 * 6 5 4 8 8 C 1.46895 * 111.00408 * 293.95198 * 6 5 4 9 9 N 1.46503 * 109.47006 * 119.99957 * 2 1 3 10 10 C 1.34783 * 119.99877 * 274.99941 * 9 2 1 11 11 O 1.21595 * 119.99767 * 359.72493 * 10 9 2 12 12 N 1.34777 * 120.00093 * 179.97438 * 10 9 2 13 13 C 1.40132 * 120.00090 * 175.63658 * 12 10 9 14 14 C 1.38692 * 120.07264 * 34.57822 * 13 12 10 15 15 C 1.38206 * 120.02038 * 179.69888 * 14 13 12 16 16 C 1.38548 * 120.17179 * 0.59193 * 15 14 13 17 17 F 1.35094 * 119.92201 * 179.69987 * 16 15 14 18 18 C 1.38342 * 120.15037 * 359.68478 * 16 15 14 19 19 C 1.38741 * 119.97993 * 0.02562 * 18 16 15 20 20 O 1.35776 * 120.08816 * 179.97438 * 19 18 16 21 21 C 1.34802 * 117.00391 * 5.43174 * 20 19 18 22 22 H 1.08007 * 119.99888 * 354.95716 * 21 20 19 23 23 C 1.38633 * 120.00381 * 174.95492 * 21 20 19 24 24 N 1.31567 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00020 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47210 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46945 * 120.00263 * 25 23 21 28 28 H 1.48495 * 109.47097 * 240.00197 * 25 23 21 29 29 H 1.09005 * 109.46658 * 300.00495 * 1 2 3 30 30 H 1.08997 * 109.46669 * 60.00000 * 1 2 3 31 31 H 1.08998 * 109.47547 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47247 * 295.00528 * 4 2 1 33 33 H 1.08999 * 109.47034 * 55.00201 * 4 2 1 34 34 H 1.08999 * 109.47174 * 300.00198 * 5 4 2 35 35 H 1.08998 * 109.46773 * 60.00019 * 5 4 2 36 36 H 1.09001 * 109.47216 * 60.00385 * 7 6 5 37 37 H 1.09001 * 109.47083 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47273 * 299.99892 * 7 6 5 39 39 H 1.09000 * 109.46683 * 60.00258 * 8 6 5 40 40 H 1.08990 * 109.47491 * 180.02562 * 8 6 5 41 41 H 1.08995 * 109.47081 * 300.00732 * 8 6 5 42 42 H 0.97000 * 120.00446 * 94.99266 * 9 2 1 43 43 H 0.96999 * 119.99686 * 355.64011 * 12 10 9 44 44 H 1.07995 * 119.99373 * 359.97438 * 14 13 12 45 45 H 1.07995 * 119.91104 * 180.28022 * 15 14 13 46 46 H 1.08000 * 120.01320 * 180.02562 * 18 16 15 47 47 H 0.97005 * 119.99677 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 7 4.0545 -1.3056 -2.5133 7 6 5.4789 -1.0255 -2.7381 8 6 3.8099 -2.7512 -2.4238 9 7 2.0183 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3572 11 8 1.8626 1.1628 2.4105 12 7 2.5958 -0.6536 3.4578 13 6 2.8166 0.0648 4.6406 14 6 1.9939 1.1317 4.9695 15 6 2.2088 1.8356 6.1394 16 6 3.2529 1.4862 6.9804 17 9 3.4621 2.1815 8.1196 18 6 4.0815 0.4268 6.6564 19 6 3.8677 -0.2879 5.4866 20 8 4.6799 -1.3277 5.1661 21 6 5.6044 -1.6863 6.0793 22 1 5.7285 -1.1029 6.9798 23 6 6.3958 -2.8037 5.8627 24 7 6.2449 -3.5140 4.7656 25 14 7.6764 -3.3008 7.1286 26 1 7.6466 -2.3450 8.2647 27 1 7.3772 -4.6682 7.6247 28 1 9.0231 -3.2849 6.5029 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2619 -2.1369 34 1 3.8533 0.4368 -1.3572 35 1 3.9994 -1.0729 -0.4258 36 1 6.0562 -1.3657 -1.8783 37 1 5.8155 -1.5496 -3.6325 38 1 5.6218 0.0470 -2.8704 39 1 2.7395 -2.9333 -2.3276 40 1 4.1823 -3.2392 -3.3244 41 1 4.3266 -3.1539 -1.5526 42 1 2.2489 -1.6318 1.1528 43 1 2.7659 -1.6082 3.4312 44 1 1.1823 1.4099 4.3137 45 1 1.5643 2.6632 6.3960 46 1 4.8944 0.1561 7.3138 47 1 6.7984 -4.2961 4.6142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761661654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:25 Heat of formation + Delta-G solvation = -71.734001 kcal Electronic energy + Delta-G solvation = -29687.359964 eV Core-core repulsion = 25399.712349 eV Total energy + Delta-G solvation = -4287.647616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.23995 -40.30984 -38.97109 -37.94178 -36.53609 -35.58419 -34.00838 -32.42228 -31.61411 -29.44496 -29.27081 -27.94958 -27.73899 -25.51476 -24.77405 -22.83366 -21.92458 -21.36158 -20.75382 -20.43550 -18.36985 -18.27842 -17.61331 -16.80691 -16.00138 -15.64361 -15.36948 -15.24037 -15.13805 -15.09875 -14.93175 -14.60304 -14.28565 -14.01829 -13.67575 -13.59483 -13.44672 -13.22867 -13.18880 -12.82900 -12.49293 -12.34007 -12.17233 -12.12801 -11.93236 -11.81548 -11.66783 -11.39636 -11.31865 -11.03544 -10.95909 -10.79474 -10.72951 -10.53692 -9.84701 -9.75563 -9.42851 -8.98909 -8.97881 -8.52284 -7.86366 -7.09311 -6.62296 -4.19807 1.86758 2.13388 2.92887 3.03920 3.06659 3.11818 3.49016 3.75540 3.83619 4.36174 4.47591 4.66872 4.86014 4.86706 4.94769 4.95612 5.04901 5.12788 5.21629 5.29481 5.36522 5.45869 5.52172 5.53089 5.59118 5.64351 5.73072 5.74792 5.74947 5.78632 5.94733 6.00766 6.05205 6.18701 6.23629 6.56352 6.67645 6.71933 6.83522 6.84471 6.92027 6.94633 7.08572 7.16560 7.32576 7.67658 7.82528 8.29159 8.83816 8.89063 9.46406 10.54927 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008233 B = 0.003624 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.126959 B = 7723.499909 C =10500.746628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.162 3.838 3 H 0.089 0.911 4 C -0.122 4.122 5 C 0.051 3.949 6 N -0.548 5.548 7 C 0.022 3.978 8 C 0.019 3.981 9 N -0.742 5.742 10 C 0.705 3.295 11 O -0.586 6.586 12 N -0.666 5.666 13 C 0.079 3.921 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.127 3.873 17 F -0.152 7.152 18 C -0.258 4.258 19 C 0.157 3.843 20 O -0.169 6.169 21 C -0.391 4.391 22 H 0.095 0.905 23 C 0.043 3.957 24 N -0.861 5.861 25 Si 0.941 3.059 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.395 0.605 43 H 0.410 0.590 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 1.359 -11.367 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.056 3.944 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.077 4.077 6 N -0.272 5.272 7 C -0.126 4.126 8 C -0.130 4.130 9 N -0.398 5.398 10 C 0.406 3.594 11 O -0.464 6.464 12 N -0.312 5.312 13 C -0.016 4.016 14 C -0.071 4.071 15 C -0.248 4.248 16 C 0.107 3.893 17 F -0.131 7.131 18 C -0.279 4.279 19 C 0.101 3.899 20 O -0.072 6.072 21 C -0.467 4.467 22 H 0.112 0.888 23 C -0.162 4.162 24 N -0.496 5.496 25 Si 0.766 3.234 26 H -0.189 1.189 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.229 0.771 43 H 0.246 0.754 44 H 0.161 0.839 45 H 0.140 0.860 46 H 0.160 0.840 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.304 2.261 -12.055 14.275 hybrid contribution 1.523 -1.410 1.570 2.602 sum -5.781 0.852 -10.485 12.003 Atomic orbital electron populations 1.22186 0.95383 1.01969 1.02543 1.20772 0.93696 0.97406 0.82511 0.89260 1.21906 0.95253 1.01327 0.97508 1.22190 0.95228 0.99461 0.90840 1.62045 1.17424 1.09568 1.38182 1.22384 0.87594 1.01998 1.00617 1.22454 1.01923 0.87809 1.00790 1.45223 1.72010 1.13746 1.08776 1.15900 0.78464 0.84950 0.80123 1.90866 1.56992 1.14109 1.84422 1.42209 1.68619 1.11865 1.08541 1.16649 0.96922 0.99561 0.88477 1.20673 0.97889 0.93643 0.94869 1.20495 1.01705 1.05447 0.97157 1.17456 0.96650 0.92132 0.83035 1.91407 1.94699 1.78220 1.48742 1.20844 1.05426 1.00352 1.01295 1.18828 0.88761 0.89989 0.92365 1.83930 1.40526 1.40979 1.41803 1.21402 1.12690 1.11424 1.01206 0.88799 1.25268 0.98285 0.94900 0.97741 1.70019 1.38554 1.16528 1.24458 0.85626 0.79351 0.78956 0.79465 1.18923 1.20027 1.20077 0.91799 0.91795 0.92659 0.91316 0.89551 0.90652 0.93999 0.95305 0.91479 0.91370 0.91139 0.91603 0.95260 0.77069 0.75443 0.83946 0.85969 0.84005 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.16 1.78 2.58 -67.93 -0.18 1.60 16 3 H 0.09 1.15 7.57 -51.93 -0.39 0.76 16 4 C -0.12 -1.10 4.68 -26.73 -0.13 -1.23 16 5 C 0.05 0.54 4.85 -3.82 -0.02 0.53 16 6 N -0.55 -5.68 5.02 -251.27 -1.26 -6.95 16 7 C 0.02 0.22 9.57 60.06 0.57 0.79 16 8 C 0.02 0.17 9.32 60.06 0.56 0.73 16 9 N -0.74 -9.50 4.53 -58.67 -0.27 -9.77 16 10 C 0.70 12.02 8.37 -86.91 -0.73 11.29 16 11 O -0.59 -11.50 13.42 5.28 0.07 -11.42 16 12 N -0.67 -12.19 5.20 -14.07 -0.07 -12.27 16 13 C 0.08 1.64 6.33 -83.44 -0.53 1.11 16 14 C -0.05 -0.97 8.69 -39.43 -0.34 -1.31 16 15 C -0.23 -4.26 10.02 -39.48 -0.40 -4.66 16 16 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 17 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 18 C -0.26 -5.66 9.14 -39.36 -0.36 -6.02 16 19 C 0.16 3.61 6.66 -38.94 -0.26 3.35 16 20 O -0.17 -4.40 9.32 0.05 0.00 -4.40 16 21 C -0.39 -10.28 9.49 30.88 0.29 -9.99 16 22 H 0.09 2.34 5.20 -52.48 -0.27 2.06 16 23 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 24 N -0.86 -23.31 13.67 55.48 0.76 -22.55 16 25 Si 0.94 19.64 29.55 -169.99 -5.02 14.61 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.57 6.55 -51.93 -0.34 0.23 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.04 0.52 7.73 -51.93 -0.40 0.12 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.07 0.58 6.47 -51.93 -0.34 0.24 16 40 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.40 4.42 8.62 -40.82 -0.35 4.07 16 43 H 0.41 7.17 8.59 -40.82 -0.35 6.82 16 44 H 0.14 2.68 6.19 -52.49 -0.33 2.36 16 45 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 46 H 0.14 3.11 5.64 -52.49 -0.30 2.82 16 47 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -29.81 391.48 -8.24 -38.04 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.85 Total: 13.48 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.54 Total: -1.78 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.84 Total: -51.53 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.07 Total: -15.83 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.81 -8.24 -38.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761661654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.690 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds