Wall clock time and date at job start Tue Mar 31 2020 22:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47547 * 2 1 4 4 C 1.52997 * 109.47225 * 239.99488 * 2 1 3 5 5 C 1.53003 * 109.47145 * 175.00374 * 4 2 1 6 6 N 1.46902 * 109.46749 * 180.02562 * 5 4 2 7 7 C 1.46899 * 110.99504 * 169.99733 * 6 5 4 8 8 C 1.46895 * 111.00408 * 293.95198 * 6 5 4 9 9 N 1.46503 * 109.47006 * 119.99957 * 2 1 3 10 10 C 1.34783 * 119.99877 * 274.99941 * 9 2 1 11 11 O 1.21595 * 119.99767 * 359.72493 * 10 9 2 12 12 N 1.34777 * 120.00093 * 179.97438 * 10 9 2 13 13 C 1.40132 * 120.00090 * 175.63658 * 12 10 9 14 14 C 1.38692 * 120.07264 * 34.57822 * 13 12 10 15 15 C 1.38206 * 120.02038 * 179.69888 * 14 13 12 16 16 C 1.38548 * 120.17179 * 0.59193 * 15 14 13 17 17 F 1.35094 * 119.92201 * 179.69987 * 16 15 14 18 18 C 1.38342 * 120.15037 * 359.68478 * 16 15 14 19 19 C 1.38741 * 119.97993 * 0.02562 * 18 16 15 20 20 O 1.35776 * 120.08816 * 179.97438 * 19 18 16 21 21 C 1.34802 * 117.00391 * 5.43174 * 20 19 18 22 22 H 1.08007 * 119.99888 * 354.95716 * 21 20 19 23 23 C 1.38633 * 120.00381 * 174.95492 * 21 20 19 24 24 N 1.31567 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00020 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47210 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46945 * 120.00263 * 25 23 21 28 28 H 1.48495 * 109.47097 * 240.00197 * 25 23 21 29 29 H 1.09005 * 109.46658 * 300.00495 * 1 2 3 30 30 H 1.08997 * 109.46669 * 60.00000 * 1 2 3 31 31 H 1.08998 * 109.47547 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47247 * 295.00528 * 4 2 1 33 33 H 1.08999 * 109.47034 * 55.00201 * 4 2 1 34 34 H 1.08999 * 109.47174 * 300.00198 * 5 4 2 35 35 H 1.08998 * 109.46773 * 60.00019 * 5 4 2 36 36 H 1.09001 * 109.47216 * 60.00385 * 7 6 5 37 37 H 1.09001 * 109.47083 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47273 * 299.99892 * 7 6 5 39 39 H 1.09000 * 109.46683 * 60.00258 * 8 6 5 40 40 H 1.08990 * 109.47491 * 180.02562 * 8 6 5 41 41 H 1.08995 * 109.47081 * 300.00732 * 8 6 5 42 42 H 0.97000 * 120.00446 * 94.99266 * 9 2 1 43 43 H 0.96999 * 119.99686 * 355.64011 * 12 10 9 44 44 H 1.07995 * 119.99373 * 359.97438 * 14 13 12 45 45 H 1.07995 * 119.91104 * 180.28022 * 15 14 13 46 46 H 1.08000 * 120.01320 * 180.02562 * 18 16 15 47 47 H 0.97005 * 119.99677 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 7 4.0545 -1.3056 -2.5133 7 6 5.4789 -1.0255 -2.7381 8 6 3.8099 -2.7512 -2.4238 9 7 2.0183 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3572 11 8 1.8626 1.1628 2.4105 12 7 2.5958 -0.6536 3.4578 13 6 2.8166 0.0648 4.6406 14 6 1.9939 1.1317 4.9695 15 6 2.2088 1.8356 6.1394 16 6 3.2529 1.4862 6.9804 17 9 3.4621 2.1815 8.1196 18 6 4.0815 0.4268 6.6564 19 6 3.8677 -0.2879 5.4866 20 8 4.6799 -1.3277 5.1661 21 6 5.6044 -1.6863 6.0793 22 1 5.7285 -1.1029 6.9798 23 6 6.3958 -2.8037 5.8627 24 7 6.2449 -3.5140 4.7656 25 14 7.6764 -3.3008 7.1286 26 1 7.6466 -2.3450 8.2647 27 1 7.3772 -4.6682 7.6247 28 1 9.0231 -3.2849 6.5029 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7716 -1.2055 33 1 1.6054 -0.2619 -2.1369 34 1 3.8533 0.4368 -1.3572 35 1 3.9994 -1.0729 -0.4258 36 1 6.0562 -1.3657 -1.8783 37 1 5.8155 -1.5496 -3.6325 38 1 5.6218 0.0470 -2.8704 39 1 2.7395 -2.9333 -2.3276 40 1 4.1823 -3.2392 -3.3244 41 1 4.3266 -3.1539 -1.5526 42 1 2.2489 -1.6318 1.1528 43 1 2.7659 -1.6082 3.4312 44 1 1.1823 1.4099 4.3137 45 1 1.5643 2.6632 6.3960 46 1 4.8944 0.1561 7.3138 47 1 6.7984 -4.2961 4.6142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761661654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:24 Heat of formation + Delta-G solvation = -91.335123 kcal Electronic energy + Delta-G solvation = -29688.209933 eV Core-core repulsion = 25399.712349 eV Total energy + Delta-G solvation = -4288.497584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.82859 -41.76688 -40.51992 -38.95092 -38.09165 -36.72797 -35.52017 -34.31958 -32.73419 -31.05696 -30.25391 -29.45949 -28.50136 -27.39637 -25.61977 -24.31735 -23.48866 -22.47195 -21.90320 -21.56064 -20.15120 -19.75678 -19.21082 -18.27972 -17.22642 -16.98512 -16.94059 -16.60140 -16.38787 -16.20332 -16.05390 -15.97790 -15.75878 -15.48249 -15.25990 -15.16353 -14.94038 -14.39128 -14.13880 -14.02028 -13.82678 -13.60884 -13.42704 -13.27134 -13.04138 -12.97159 -12.70314 -12.62650 -12.56126 -12.34978 -12.18183 -12.14285 -11.87763 -11.67338 -11.61815 -11.28869 -10.98241 -10.84363 -10.13717 -9.54351 -9.37962 -8.74132 -8.52539 -6.18356 0.21854 0.46675 1.35994 1.41414 1.51848 1.63362 2.08159 2.13092 2.68505 2.94294 3.04747 3.15416 3.21254 3.45754 3.82611 3.94976 4.02043 4.12475 4.16827 4.26593 4.36551 4.39283 4.47036 4.54014 4.61072 4.66169 4.71230 4.72461 4.84659 4.94667 4.95567 4.96059 5.01222 5.03038 5.08547 5.20044 5.22801 5.31359 5.34669 5.37265 5.55938 5.63698 5.91073 5.94584 6.00654 6.04489 6.09242 6.92402 6.96559 7.49456 7.63051 8.67997 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008233 B = 0.003624 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.126959 B = 7723.499909 C =10500.746628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.107 4.107 5 C 0.052 3.948 6 N -0.551 5.551 7 C 0.021 3.979 8 C 0.017 3.983 9 N -0.726 5.726 10 C 0.703 3.297 11 O -0.611 6.611 12 N -0.668 5.668 13 C 0.080 3.920 14 C -0.051 4.051 15 C -0.203 4.203 16 C 0.121 3.879 17 F -0.145 7.145 18 C -0.264 4.264 19 C 0.130 3.870 20 O -0.203 6.203 21 C -0.415 4.415 22 H 0.098 0.902 23 C -0.008 4.008 24 N -0.905 5.905 25 Si 1.010 2.990 26 H -0.257 1.257 27 H -0.267 1.267 28 H -0.270 1.270 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.013 0.987 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.405 0.595 43 H 0.412 0.588 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.135 0.865 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 1.760 -11.963 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.076 4.076 6 N -0.274 5.274 7 C -0.128 4.128 8 C -0.131 4.131 9 N -0.381 5.381 10 C 0.404 3.596 11 O -0.491 6.491 12 N -0.315 5.315 13 C -0.015 4.015 14 C -0.071 4.071 15 C -0.223 4.223 16 C 0.101 3.899 17 F -0.124 7.124 18 C -0.285 4.285 19 C 0.076 3.924 20 O -0.108 6.108 21 C -0.491 4.491 22 H 0.116 0.884 23 C -0.208 4.208 24 N -0.542 5.542 25 Si 0.831 3.169 26 H -0.180 1.180 27 H -0.192 1.192 28 H -0.195 1.195 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.034 0.966 42 H 0.241 0.759 43 H 0.248 0.752 44 H 0.171 0.829 45 H 0.175 0.825 46 H 0.153 0.847 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.496 2.671 -12.681 15.496 hybrid contribution 1.721 -1.364 1.688 2.770 sum -6.776 1.308 -10.992 12.979 Atomic orbital electron populations 1.22121 0.93947 1.02810 1.02491 1.20931 0.94717 0.96484 0.82278 0.91203 1.21808 0.93793 1.02040 0.96875 1.22156 0.96419 0.98809 0.90253 1.62107 1.17580 1.10251 1.37491 1.22437 0.87291 1.02419 1.00630 1.22524 1.02725 0.87035 1.00794 1.45221 1.70787 1.14133 1.07990 1.16017 0.78172 0.84754 0.80634 1.90835 1.58208 1.15204 1.84897 1.42245 1.68825 1.11917 1.08522 1.16905 0.96174 0.99646 0.88816 1.20865 0.97841 0.93157 0.95263 1.20886 1.00595 1.05086 0.95706 1.17450 0.96877 0.91934 0.83641 1.91424 1.94693 1.77889 1.48352 1.20918 1.05660 1.00920 1.01008 1.19174 0.89514 0.90078 0.93614 1.83909 1.41736 1.42606 1.42530 1.21783 1.13433 1.12155 1.01718 0.88423 1.26353 1.00123 0.94554 0.99750 1.70124 1.40179 1.17415 1.26490 0.84630 0.76487 0.78824 0.77005 1.18037 1.19154 1.19510 0.94069 0.89613 0.91344 0.89904 0.87849 0.91524 0.96272 0.96834 0.89950 0.91084 0.89782 0.90404 0.96625 0.75945 0.75241 0.82899 0.82466 0.84710 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 71.98 0.68 -2.08 16 2 C 0.16 3.34 2.58 44.99 0.12 3.45 16 3 H 0.07 1.77 7.57 -2.39 -0.02 1.75 16 4 C -0.11 -1.74 4.68 30.59 0.14 -1.59 16 5 C 0.05 1.09 4.85 86.30 0.42 1.51 16 6 N -0.55 -10.82 5.02 -948.87 -4.76 -15.58 16 7 C 0.02 0.39 9.57 127.69 1.22 1.61 16 8 C 0.02 0.29 9.32 127.69 1.19 1.48 16 9 N -0.73 -18.29 4.53 -457.79 -2.08 -20.37 16 10 C 0.70 23.99 8.37 179.05 1.50 25.49 16 11 O -0.61 -23.81 13.42 -4.01 -0.05 -23.86 16 12 N -0.67 -24.87 5.20 -316.69 -1.65 -26.51 16 13 C 0.08 3.36 6.33 38.22 0.24 3.60 16 14 C -0.05 -1.90 8.69 22.37 0.19 -1.70 16 15 C -0.20 -7.12 10.02 22.34 0.22 -6.90 16 16 C 0.12 4.72 7.29 22.37 0.16 4.88 16 17 F -0.14 -5.33 17.26 44.97 0.78 -4.55 16 18 C -0.26 -11.71 9.14 22.41 0.20 -11.50 16 19 C 0.13 6.14 6.66 22.68 0.15 6.30 16 20 O -0.20 -10.98 9.32 -22.75 -0.21 -11.20 16 21 C -0.42 -22.57 9.49 67.91 0.64 -21.93 16 22 H 0.10 5.02 5.20 -2.91 -0.02 5.01 16 23 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 24 N -0.91 -50.62 13.67 21.61 0.30 -50.32 16 25 Si 1.01 40.72 29.55 68.60 2.03 42.75 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 28 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 29 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.16 6.55 -2.39 -0.02 1.14 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 35 H 0.02 0.48 7.73 -2.39 -0.02 0.47 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 38 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 39 H 0.08 1.19 6.47 -2.39 -0.02 1.17 16 40 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 41 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.41 8.85 8.62 -92.71 -0.80 8.05 16 43 H 0.41 14.90 8.59 -92.71 -0.80 14.10 16 44 H 0.15 5.50 6.19 -2.91 -0.02 5.49 16 45 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 46 H 0.14 6.07 5.64 -2.91 -0.02 6.05 16 47 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -65.72 391.48 1.33 -64.39 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.58 Total: 42.62 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 7.56 Total: 2.64 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -8.19 Total: -112.79 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.27 Total: -35.06 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -65.72 1.33 -64.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761661654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.942 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds