Wall clock time and date at job start Tue Mar 31 2020 23:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 C 1.52998 * 109.47481 * 120.00188 * 2 1 3 5 5 H 1.08995 * 109.49332 * 182.37341 * 4 2 1 6 6 C 1.53053 * 109.50268 * 302.42388 * 4 2 1 7 7 N 1.46957 * 109.36056 * 178.37620 * 6 4 2 8 8 C 1.46901 * 110.99909 * 176.81092 * 7 6 4 9 9 C 1.46958 * 110.88373 * 300.67990 * 7 6 4 10 10 C 1.53046 * 109.36258 * 59.32241 * 9 7 6 11 11 N 1.46958 * 109.48609 * 62.32336 * 4 2 1 12 12 C 1.46899 * 111.00080 * 56.82936 * 11 4 2 13 13 N 1.46495 * 109.46976 * 174.90526 * 12 11 4 14 14 N 1.40168 * 126.14544 * 90.02482 * 13 12 11 15 15 C 1.32242 * 107.75675 * 179.97438 * 14 13 12 16 16 C 1.40125 * 125.92350 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99652 * 185.63335 * 16 15 14 18 18 C 1.40040 * 119.99935 * 5.63685 * 16 15 14 19 19 N 1.30792 * 119.99699 * 183.11081 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 3.11747 * 18 16 15 21 21 H 1.48501 * 109.47242 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47375 * 59.99778 * 20 18 16 23 23 H 1.48501 * 109.46838 * 299.99862 * 20 18 16 24 24 N 1.38492 * 108.14900 * 0.22810 * 15 14 13 25 25 C 1.46505 * 125.83750 * 179.77282 * 24 15 14 26 26 C 1.34738 * 108.33086 * 359.62189 * 24 15 14 27 27 S 1.71190 * 125.97236 * 180.14151 * 26 24 15 28 28 H 1.08999 * 109.46903 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.47430 * 59.99714 * 1 2 3 30 30 H 1.08992 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46903 * 240.00119 * 2 1 3 32 32 H 1.08999 * 109.47260 * 174.16469 * 3 2 1 33 33 H 1.09008 * 109.47132 * 294.15811 * 3 2 1 34 34 H 1.08999 * 109.47404 * 54.16292 * 3 2 1 35 35 H 1.09001 * 109.49029 * 298.34293 * 6 4 2 36 36 H 1.09000 * 109.49153 * 58.39127 * 6 4 2 37 37 H 1.09005 * 109.47036 * 60.00129 * 8 7 6 38 38 H 1.08998 * 109.47727 * 179.97438 * 8 7 6 39 39 H 1.09006 * 109.47226 * 300.00450 * 8 7 6 40 40 H 1.08999 * 109.48867 * 179.28955 * 9 7 6 41 41 H 1.09002 * 109.48684 * 299.35267 * 9 7 6 42 42 H 1.09001 * 109.48767 * 181.63412 * 10 9 7 43 43 H 1.08999 * 109.49071 * 61.56394 * 10 9 7 44 44 H 1.08995 * 109.47078 * 54.89946 * 12 11 4 45 45 H 1.09005 * 109.46722 * 294.90290 * 12 11 4 46 46 H 0.97005 * 120.00354 * 355.14956 * 19 18 16 47 47 H 1.09007 * 109.46626 * 89.99768 * 25 24 15 48 48 H 1.09000 * 109.46979 * 209.99604 * 25 24 15 49 49 H 1.08999 * 109.46790 * 330.00065 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1292 -0.6847 1.2710 6 6 1.4811 -0.0365 2.4986 7 7 1.9414 -0.7550 3.6951 8 6 1.4873 -0.0830 4.9199 9 6 1.4982 -2.1559 3.6677 10 6 2.0572 -2.8406 2.4183 11 7 1.5968 -2.1221 1.2217 12 6 2.0511 -2.7941 -0.0030 13 7 1.6976 -4.2144 0.0595 14 7 0.5044 -4.7904 -0.3980 15 6 0.5681 -6.0902 -0.1633 16 6 -0.4243 -7.0307 -0.4704 17 1 -0.3117 -8.0572 -0.1543 18 6 -1.5620 -6.6394 -1.1871 19 7 -2.5164 -7.5026 -1.4210 20 14 -1.7164 -4.8849 -1.8092 21 1 -3.0036 -4.7276 -2.5328 22 1 -0.5912 -4.5856 -2.7309 23 1 -1.6768 -3.9466 -0.6588 24 7 1.7832 -6.3600 0.4438 25 6 2.2525 -7.6791 0.8752 26 6 2.4616 -5.2024 0.5669 27 16 4.0188 -5.0175 1.2536 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1250 1.4443 0.1045 33 1 1.7646 1.9253 -0.9377 34 1 1.5939 1.9856 0.8331 35 1 1.8324 0.9947 2.5361 36 1 0.3918 -0.0486 2.4634 37 1 0.3979 -0.0464 4.9317 38 1 1.8412 -0.6356 5.7902 39 1 1.8852 0.9315 4.9467 40 1 1.8619 -2.6698 4.5575 41 1 0.4090 -2.1923 3.6460 42 1 1.7059 -3.8718 2.3808 43 1 3.1465 -2.8281 2.4533 44 1 3.1325 -2.6924 -0.0936 45 1 1.5695 -2.3376 -0.8678 46 1 -2.4059 -8.4304 -1.1602 47 1 2.7965 -8.1557 0.0597 48 1 2.9125 -7.5665 1.7354 49 1 1.3976 -8.2963 1.1514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794632111.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:10 Heat of formation + Delta-G solvation = 85.827636 kcal Electronic energy + Delta-G solvation = -29597.368954 eV Core-core repulsion = 25915.059650 eV Total energy + Delta-G solvation = -3682.309303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.32750 -39.74680 -36.21560 -35.45605 -34.20875 -33.58065 -31.35512 -29.74420 -28.98937 -27.20995 -27.04449 -26.55593 -24.79526 -24.14750 -22.99265 -21.77236 -20.81385 -20.43796 -18.84485 -18.56556 -17.25771 -16.60165 -15.92469 -15.51726 -15.32925 -15.08631 -15.00359 -14.71033 -14.23379 -14.02632 -13.89925 -13.74668 -13.60698 -13.25593 -13.02302 -12.81449 -12.60926 -12.39097 -12.13007 -12.00208 -11.95158 -11.75848 -11.44355 -11.33474 -11.25248 -11.15248 -10.98978 -10.78360 -10.76128 -10.44822 -10.27983 -10.11933 -9.82218 -9.52206 -9.24963 -9.02214 -8.35843 -8.15519 -7.77117 -7.03640 -6.85542 -5.41642 1.99975 2.24066 2.83510 3.03845 3.27111 3.53171 3.58261 3.85722 3.92811 3.99942 4.16637 4.66914 4.70350 4.82992 4.98536 5.05441 5.14416 5.21219 5.27802 5.36072 5.37327 5.39042 5.54245 5.55797 5.62018 5.67485 5.68207 5.71930 5.77164 5.78912 5.85946 5.90909 5.93028 5.98004 6.03182 6.13251 6.21296 6.24841 6.30954 6.44889 6.52333 6.62188 6.92413 6.96476 7.04129 7.12037 7.18005 7.38399 7.62870 7.81289 8.09972 8.64421 9.64227 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004862 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.557178 B = 5757.197016 C = 6943.562590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.099 3.901 5 H 0.055 0.945 6 C 0.064 3.936 7 N -0.544 5.544 8 C 0.027 3.973 9 C 0.061 3.939 10 C 0.058 3.942 11 N -0.543 5.543 12 C 0.322 3.678 13 N -0.362 5.362 14 N -0.427 5.427 15 C 0.377 3.623 16 C -0.480 4.480 17 H 0.095 0.905 18 C 0.065 3.935 19 N -0.789 5.789 20 Si 1.097 2.903 21 H -0.301 1.301 22 H -0.275 1.275 23 H -0.254 1.254 24 N -0.513 5.513 25 C 0.100 3.900 26 C 0.475 3.525 27 S -0.688 6.688 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.289 0.711 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 11.458 4.425 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.010 4.010 5 H 0.073 0.927 6 C -0.064 4.064 7 N -0.269 5.269 8 C -0.121 4.121 9 C -0.067 4.067 10 C -0.070 4.070 11 N -0.271 5.271 12 C 0.111 3.889 13 N -0.148 5.148 14 N -0.263 5.263 15 C 0.132 3.868 16 C -0.522 4.522 17 H 0.113 0.887 18 C -0.161 4.161 19 N -0.412 5.412 20 Si 0.925 3.075 21 H -0.230 1.230 22 H -0.202 1.202 23 H -0.179 1.179 24 N -0.214 5.214 25 C -0.043 4.043 26 C 0.107 3.893 27 S -0.564 6.564 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.055 13.295 3.688 13.949 hybrid contribution 0.593 -2.210 0.843 2.439 sum 2.648 11.084 4.530 12.264 Atomic orbital electron populations 1.21823 0.94239 1.03228 1.00804 1.21231 0.97187 0.95901 0.97115 1.21855 1.00983 0.95667 1.01779 1.21630 0.97905 0.86906 0.94572 0.92716 1.22258 0.98456 0.97012 0.88702 1.62146 1.59941 1.02612 1.02181 1.22317 0.97836 0.99395 0.92570 1.22174 0.97925 0.88147 0.98475 1.22395 1.00199 0.96851 0.87508 1.62307 1.60706 1.01961 1.02101 1.21909 0.98670 0.74131 0.94199 1.48597 1.12944 1.06383 1.46845 1.77770 1.03883 1.04205 1.40445 1.21356 0.84615 0.91585 0.89264 1.19663 1.02291 0.96108 1.34137 0.88675 1.27359 0.89419 1.08193 0.91098 1.70642 1.30648 1.05839 1.34037 0.82908 0.74699 0.71527 0.78412 1.22982 1.20177 1.17901 1.45878 1.15570 1.07854 1.52096 1.21803 1.00901 0.80057 1.01508 1.23071 0.93502 0.83157 0.89595 1.92892 1.04252 1.93321 1.65901 0.92880 0.93305 0.91028 0.90923 0.92602 0.92511 0.92543 0.90313 0.93526 0.95839 0.91479 0.91578 0.90547 0.94523 0.90883 0.90974 0.90602 0.87566 0.89914 0.91194 0.88919 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.65 37.16 0.32 -1.42 16 2 C -0.10 -1.09 2.33 -90.62 -0.21 -1.30 16 3 C -0.15 -1.33 8.73 37.16 0.32 -1.00 16 4 C 0.10 1.32 1.75 -67.65 -0.12 1.21 16 5 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 6 C 0.06 0.79 4.20 -3.77 -0.02 0.77 16 7 N -0.54 -7.29 4.97 -242.75 -1.21 -8.49 16 8 C 0.03 0.29 9.60 60.07 0.58 0.87 16 9 C 0.06 0.93 5.62 -3.77 -0.02 0.91 16 10 C 0.06 1.03 4.22 -3.77 -0.02 1.02 16 11 N -0.54 -8.97 4.07 -230.37 -0.94 -9.91 16 12 C 0.32 5.76 5.53 -63.32 -0.35 5.41 16 13 N -0.36 -7.74 3.19 -65.06 -0.21 -7.95 16 14 N -0.43 -9.97 7.79 31.21 0.24 -9.73 16 15 C 0.38 8.77 7.26 -155.28 -1.13 7.64 16 16 C -0.48 -11.27 9.44 -38.20 -0.36 -11.63 16 17 H 0.10 2.16 7.28 -52.49 -0.38 1.78 16 18 C 0.06 1.55 5.52 -17.32 -0.10 1.45 16 19 N -0.79 -19.04 13.65 55.55 0.76 -18.28 16 20 Si 1.10 24.29 25.83 -169.99 -4.39 19.90 16 21 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.25 -5.74 6.80 56.52 0.38 -5.36 16 24 N -0.51 -10.99 3.17 -124.65 -0.39 -11.39 16 25 C 0.10 1.71 10.66 59.85 0.64 2.35 16 26 C 0.47 10.41 6.15 -86.93 -0.53 9.88 16 27 S -0.69 -15.45 27.20 -107.50 -2.92 -18.38 16 28 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 31 H 0.07 0.86 6.34 -51.93 -0.33 0.53 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.06 0.48 6.84 -51.93 -0.36 0.12 16 35 H 0.08 0.84 6.71 -51.93 -0.35 0.49 16 36 H 0.05 0.61 6.30 -51.93 -0.33 0.29 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.53 5.89 -51.93 -0.31 1.22 16 43 H 0.07 1.40 6.99 -51.93 -0.36 1.04 16 44 H 0.08 1.37 7.63 -51.93 -0.40 0.97 16 45 H 0.11 1.78 6.50 -51.93 -0.34 1.44 16 46 H 0.29 6.60 8.72 -40.82 -0.36 6.24 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.09 1.54 7.62 -51.93 -0.40 1.15 16 49 H 0.08 1.31 7.27 -51.93 -0.38 0.94 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -27.69 380.06 -12.36 -40.05 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.04 Total: 2.29 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: -0.99 Total: 16.15 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -1.74 Total: -65.75 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.39 Total: 19.90 kcal Atomic # 16 Polarization: -15.45 SS G_CDS: -2.92 Total: -18.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.69 -12.36 -40.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794632111.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.879 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds