Wall clock time and date at job start Tue Mar 31 2020 23:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 C 1.52998 * 109.47481 * 120.00188 * 2 1 3 5 5 H 1.08995 * 109.49332 * 182.37341 * 4 2 1 6 6 C 1.53053 * 109.50268 * 302.42388 * 4 2 1 7 7 N 1.46957 * 109.36056 * 178.37620 * 6 4 2 8 8 C 1.46901 * 110.99909 * 176.81092 * 7 6 4 9 9 C 1.46958 * 110.88373 * 300.67990 * 7 6 4 10 10 C 1.53046 * 109.36258 * 59.32241 * 9 7 6 11 11 N 1.46958 * 109.48609 * 62.32336 * 4 2 1 12 12 C 1.46899 * 111.00080 * 56.82936 * 11 4 2 13 13 N 1.46495 * 109.46976 * 174.90526 * 12 11 4 14 14 N 1.40168 * 126.14544 * 90.02482 * 13 12 11 15 15 C 1.32242 * 107.75675 * 179.97438 * 14 13 12 16 16 C 1.40125 * 125.92350 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99652 * 185.63335 * 16 15 14 18 18 C 1.40040 * 119.99935 * 5.63685 * 16 15 14 19 19 N 1.30792 * 119.99699 * 183.11081 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 3.11747 * 18 16 15 21 21 H 1.48501 * 109.47242 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47375 * 59.99778 * 20 18 16 23 23 H 1.48501 * 109.46838 * 299.99862 * 20 18 16 24 24 N 1.38492 * 108.14900 * 0.22810 * 15 14 13 25 25 C 1.46505 * 125.83750 * 179.77282 * 24 15 14 26 26 C 1.34738 * 108.33086 * 359.62189 * 24 15 14 27 27 S 1.71190 * 125.97236 * 180.14151 * 26 24 15 28 28 H 1.08999 * 109.46903 * 299.99880 * 1 2 3 29 29 H 1.09001 * 109.47430 * 59.99714 * 1 2 3 30 30 H 1.08992 * 109.47319 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46903 * 240.00119 * 2 1 3 32 32 H 1.08999 * 109.47260 * 174.16469 * 3 2 1 33 33 H 1.09008 * 109.47132 * 294.15811 * 3 2 1 34 34 H 1.08999 * 109.47404 * 54.16292 * 3 2 1 35 35 H 1.09001 * 109.49029 * 298.34293 * 6 4 2 36 36 H 1.09000 * 109.49153 * 58.39127 * 6 4 2 37 37 H 1.09005 * 109.47036 * 60.00129 * 8 7 6 38 38 H 1.08998 * 109.47727 * 179.97438 * 8 7 6 39 39 H 1.09006 * 109.47226 * 300.00450 * 8 7 6 40 40 H 1.08999 * 109.48867 * 179.28955 * 9 7 6 41 41 H 1.09002 * 109.48684 * 299.35267 * 9 7 6 42 42 H 1.09001 * 109.48767 * 181.63412 * 10 9 7 43 43 H 1.08999 * 109.49071 * 61.56394 * 10 9 7 44 44 H 1.08995 * 109.47078 * 54.89946 * 12 11 4 45 45 H 1.09005 * 109.46722 * 294.90290 * 12 11 4 46 46 H 0.97005 * 120.00354 * 355.14956 * 19 18 16 47 47 H 1.09007 * 109.46626 * 89.99768 * 25 24 15 48 48 H 1.09000 * 109.46979 * 209.99604 * 25 24 15 49 49 H 1.08999 * 109.46790 * 330.00065 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1292 -0.6847 1.2710 6 6 1.4811 -0.0365 2.4986 7 7 1.9414 -0.7550 3.6951 8 6 1.4873 -0.0830 4.9199 9 6 1.4982 -2.1559 3.6677 10 6 2.0572 -2.8406 2.4183 11 7 1.5968 -2.1221 1.2217 12 6 2.0511 -2.7941 -0.0030 13 7 1.6976 -4.2144 0.0595 14 7 0.5044 -4.7904 -0.3980 15 6 0.5681 -6.0902 -0.1633 16 6 -0.4243 -7.0307 -0.4704 17 1 -0.3117 -8.0572 -0.1543 18 6 -1.5620 -6.6394 -1.1871 19 7 -2.5164 -7.5026 -1.4210 20 14 -1.7164 -4.8849 -1.8092 21 1 -3.0036 -4.7276 -2.5328 22 1 -0.5912 -4.5856 -2.7309 23 1 -1.6768 -3.9466 -0.6588 24 7 1.7832 -6.3600 0.4438 25 6 2.2525 -7.6791 0.8752 26 6 2.4616 -5.2024 0.5669 27 16 4.0188 -5.0175 1.2536 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1250 1.4443 0.1045 33 1 1.7646 1.9253 -0.9377 34 1 1.5939 1.9856 0.8331 35 1 1.8324 0.9947 2.5361 36 1 0.3918 -0.0486 2.4634 37 1 0.3979 -0.0464 4.9317 38 1 1.8412 -0.6356 5.7902 39 1 1.8852 0.9315 4.9467 40 1 1.8619 -2.6698 4.5575 41 1 0.4090 -2.1923 3.6460 42 1 1.7059 -3.8718 2.3808 43 1 3.1465 -2.8281 2.4533 44 1 3.1325 -2.6924 -0.0936 45 1 1.5695 -2.3376 -0.8678 46 1 -2.4059 -8.4304 -1.1602 47 1 2.7965 -8.1557 0.0597 48 1 2.9125 -7.5665 1.7354 49 1 1.3976 -8.2963 1.1514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794632111.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:09 Heat of formation + Delta-G solvation = 70.275812 kcal Electronic energy + Delta-G solvation = -29598.043332 eV Core-core repulsion = 25915.059650 eV Total energy + Delta-G solvation = -3682.983681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03811 -40.93407 -37.43152 -36.71177 -35.98347 -35.01943 -33.05822 -30.97628 -30.23407 -28.46066 -28.30245 -27.94246 -26.15348 -25.25792 -24.35790 -23.29702 -22.45379 -21.67590 -20.38720 -19.94790 -18.86226 -17.94369 -17.56598 -16.89056 -16.77227 -16.42534 -16.29806 -15.83465 -15.69069 -15.49467 -15.35900 -15.08470 -14.80941 -14.67783 -14.35401 -14.02364 -13.70619 -13.68018 -13.58240 -13.12909 -12.99158 -12.96127 -12.84691 -12.68442 -12.65324 -12.56686 -12.26259 -12.02266 -11.94854 -11.82859 -11.67711 -11.51341 -11.30276 -11.19580 -10.94407 -10.80126 -9.64875 -9.58192 -9.35002 -8.82563 -8.60445 -7.25621 0.28743 0.54868 1.00459 1.33980 1.54204 1.77550 1.80317 2.12314 2.38184 2.70847 2.85137 2.89684 3.42074 3.64989 3.83114 3.86541 3.90627 4.09195 4.15312 4.21327 4.28310 4.28497 4.32638 4.37074 4.43326 4.55395 4.58408 4.59029 4.63429 4.67834 4.75074 4.83625 4.87462 4.90258 4.94209 4.98167 5.05203 5.08255 5.13857 5.22614 5.26301 5.41779 5.46836 5.52101 5.68474 5.74737 5.91987 6.04771 6.09434 6.12891 6.27391 6.85349 7.80641 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004862 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.557178 B = 5757.197016 C = 6943.562590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.138 4.138 4 C 0.099 3.901 5 H 0.048 0.952 6 C 0.068 3.932 7 N -0.553 5.553 8 C 0.028 3.972 9 C 0.070 3.930 10 C 0.073 3.927 11 N -0.546 5.546 12 C 0.320 3.680 13 N -0.361 5.361 14 N -0.439 5.439 15 C 0.369 3.631 16 C -0.488 4.488 17 H 0.100 0.900 18 C 0.046 3.954 19 N -0.803 5.803 20 Si 1.125 2.875 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.265 1.265 24 N -0.515 5.515 25 C 0.095 3.905 26 C 0.470 3.530 27 S -0.704 6.704 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.036 0.964 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.293 0.707 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 13.351 4.722 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.009 4.009 5 H 0.066 0.934 6 C -0.060 4.060 7 N -0.278 5.278 8 C -0.120 4.120 9 C -0.058 4.058 10 C -0.056 4.056 11 N -0.274 5.274 12 C 0.110 3.890 13 N -0.147 5.147 14 N -0.276 5.276 15 C 0.123 3.877 16 C -0.530 4.530 17 H 0.118 0.882 18 C -0.177 4.177 19 N -0.426 5.426 20 Si 0.952 3.048 21 H -0.222 1.222 22 H -0.207 1.207 23 H -0.191 1.191 24 N -0.215 5.215 25 C -0.046 4.046 26 C 0.101 3.899 27 S -0.580 6.580 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.115 0.885 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.216 15.191 3.992 15.863 hybrid contribution 0.581 -2.776 0.783 2.942 sum 2.797 12.415 4.775 13.593 Atomic orbital electron populations 1.21757 0.94569 1.01264 1.01932 1.21228 0.96755 0.97391 0.95733 1.21804 1.01196 0.93663 1.02935 1.21787 0.97588 0.85154 0.96413 0.93417 1.22300 0.98080 0.97930 0.87691 1.62165 1.60203 1.01742 1.03677 1.22392 0.98090 1.00208 0.91319 1.22006 0.96969 0.89609 0.97248 1.22097 0.98744 0.95505 0.89235 1.62362 1.60677 1.03316 1.01018 1.22094 0.98589 0.72904 0.95420 1.48902 1.12147 1.07444 1.46223 1.77684 1.04856 1.04685 1.40330 1.21387 0.85204 0.91620 0.89537 1.19723 1.02414 0.96439 1.34468 0.88218 1.27789 0.89556 1.09188 0.91201 1.70639 1.30936 1.06253 1.34807 0.82502 0.74644 0.70009 0.77620 1.22202 1.20729 1.19143 1.46143 1.14912 1.08964 1.51487 1.22061 1.01759 0.78582 1.02165 1.23069 0.93489 0.83535 0.89813 1.92841 1.04854 1.93513 1.66762 0.92048 0.91907 0.94432 0.91533 0.92219 0.91358 0.91429 0.87690 0.94051 0.95608 0.91006 0.89526 0.90134 0.95608 0.94519 0.92934 0.90813 0.86566 0.89506 0.89710 0.88539 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.65 71.98 0.62 -2.51 16 2 C -0.09 -1.95 2.33 -10.79 -0.03 -1.98 16 3 C -0.14 -2.11 8.73 71.98 0.63 -1.48 16 4 C 0.10 2.53 1.75 44.92 0.08 2.61 16 5 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 6 C 0.07 1.54 4.20 86.31 0.36 1.90 16 7 N -0.55 -13.90 4.97 -921.92 -4.58 -18.48 16 8 C 0.03 0.52 9.60 127.69 1.23 1.75 16 9 C 0.07 2.12 5.62 86.31 0.49 2.60 16 10 C 0.07 2.61 4.22 86.31 0.36 2.97 16 11 N -0.55 -18.07 4.07 -882.77 -3.59 -21.66 16 12 C 0.32 11.52 5.53 170.81 0.94 12.46 16 13 N -0.36 -15.57 3.19 -359.74 -1.15 -16.72 16 14 N -0.44 -20.61 7.79 -55.17 -0.43 -21.04 16 15 C 0.37 17.15 7.26 133.53 0.97 18.12 16 16 C -0.49 -22.80 9.44 23.17 0.22 -22.58 16 17 H 0.10 4.47 7.28 -2.91 -0.02 4.45 16 18 C 0.05 2.19 5.52 85.28 0.47 2.66 16 19 N -0.80 -38.32 13.65 21.84 0.30 -38.03 16 20 Si 1.13 49.25 25.83 68.60 1.77 51.02 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.27 -12.03 6.80 99.48 0.68 -11.35 16 24 N -0.51 -21.96 3.17 -548.29 -1.74 -23.69 16 25 C 0.10 3.19 10.66 127.77 1.36 4.55 16 26 C 0.47 20.73 6.15 179.06 1.10 21.83 16 27 S -0.70 -31.71 27.20 -56.49 -1.54 -33.25 16 28 H 0.06 1.27 6.35 -2.39 -0.02 1.26 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.11 7.67 -2.39 -0.02 1.09 16 31 H 0.07 1.50 6.34 -2.39 -0.02 1.48 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.89 6.84 -2.39 -0.02 0.88 16 35 H 0.11 1.86 6.71 -2.39 -0.02 1.85 16 36 H 0.04 1.00 6.30 -2.39 -0.02 0.99 16 37 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 39 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 2.32 8.13 -2.39 -0.02 2.30 16 41 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.04 1.57 5.89 -2.39 -0.01 1.56 16 43 H 0.05 2.08 6.99 -2.39 -0.02 2.06 16 44 H 0.07 2.68 7.63 -2.39 -0.02 2.66 16 45 H 0.12 3.90 6.50 -2.38 -0.02 3.89 16 46 H 0.29 13.24 8.72 -92.70 -0.81 12.44 16 47 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 48 H 0.10 3.15 7.62 -2.39 -0.02 3.13 16 49 H 0.10 3.00 7.27 -2.39 -0.02 2.98 16 Total: -1.00 -58.70 380.06 -1.27 -59.97 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.87 Total: 18.96 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 8.81 Total: 42.91 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -11.19 Total: -139.61 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.77 Total: 51.02 kcal Atomic # 16 Polarization: -31.71 SS G_CDS: -1.54 Total: -33.25 kcal Total: -58.70 -1.27 -59.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794632111.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.249 kcal (2) G-P(sol) polarization free energy of solvation -58.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds