Wall clock time and date at job start Tue Mar 31 2020 22:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.71914 * 2 1 4 4 C 1.53677 * 110.65700 * 236.93094 * 2 1 3 5 5 N 1.44598 * 111.15247 * 241.60427 * 4 2 1 6 6 C 1.28263 * 119.97680 * 359.89468 * 5 4 2 7 7 N 1.37566 * 125.05790 * 180.10509 * 6 5 4 8 8 C 1.46967 * 120.59414 * 179.71993 * 7 6 5 9 9 C 1.53809 * 108.40037 * 124.75784 * 8 7 6 10 10 N 1.46972 * 108.57851 * 49.63523 * 9 8 7 11 11 C 1.34780 * 120.59241 * 124.62278 * 10 9 8 12 12 O 1.21278 * 119.99796 * 180.02562 * 11 10 9 13 13 C 1.50704 * 119.99792 * 0.02642 * 11 10 9 14 14 C 1.53002 * 109.46868 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47041 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46770 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46973 * 180.02562 * 16 15 14 18 18 H 1.08007 * 120.00058 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00299 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99900 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47302 * 90.00193 * 21 19 17 23 23 H 1.48500 * 109.46861 * 210.00161 * 21 19 17 24 24 H 1.48503 * 109.47351 * 329.99682 * 21 19 17 25 25 C 1.46961 * 118.81351 * 304.65106 * 10 9 8 26 26 C 1.46970 * 120.59481 * 0.02562 * 7 6 5 27 27 S 1.76759 * 109.92912 * 0.10247 * 6 5 4 28 28 H 1.09005 * 109.46796 * 183.06889 * 1 2 3 29 29 H 1.08998 * 109.46635 * 303.07273 * 1 2 3 30 30 H 1.08999 * 109.46957 * 63.07008 * 1 2 3 31 31 H 1.09002 * 109.13661 * 2.02445 * 4 2 1 32 32 H 1.09001 * 109.13345 * 121.19004 * 4 2 1 33 33 H 1.09000 * 109.60619 * 244.54247 * 8 7 6 34 34 H 1.08996 * 109.61233 * 5.04821 * 8 7 6 35 35 H 1.08994 * 109.74180 * 289.85286 * 9 8 7 36 36 H 1.09003 * 109.67608 * 169.38408 * 9 8 7 37 37 H 1.08998 * 109.47200 * 299.99494 * 13 11 10 38 38 H 1.09005 * 109.47270 * 59.99828 * 13 11 10 39 39 H 1.08996 * 109.47187 * 300.00592 * 14 13 11 40 40 H 1.09005 * 109.46756 * 60.00198 * 14 13 11 41 41 H 1.08998 * 109.47353 * 300.00379 * 15 14 13 42 42 H 1.09005 * 109.46944 * 60.00607 * 15 14 13 43 43 H 1.08998 * 109.47307 * 300.00181 * 16 15 14 44 44 H 1.08998 * 109.47419 * 60.00652 * 16 15 14 45 45 H 0.96997 * 120.00250 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.60583 * 295.47881 * 25 10 9 47 47 H 1.09000 * 109.75117 * 175.05586 * 25 10 9 48 48 H 1.09000 * 109.60686 * 354.94219 * 26 7 6 49 49 H 1.08998 * 109.61204 * 115.28830 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0722 -0.7846 -1.2050 5 7 2.8563 -1.9217 -0.7773 6 6 3.0184 -2.1543 0.4736 7 7 3.7429 -3.2010 0.9953 8 6 3.8697 -3.3714 2.4496 9 6 3.3908 -4.7863 2.8161 10 7 4.0569 -5.7506 1.9292 11 6 4.7675 -6.7754 2.4404 12 8 5.3131 -7.5646 1.6985 13 6 4.8839 -6.9407 3.9338 14 6 5.7366 -8.1723 4.2456 15 6 5.8554 -8.3398 5.7617 16 6 6.7086 -9.5709 6.0735 17 6 6.8251 -9.7363 7.5668 18 1 6.3388 -9.0338 8.2275 19 6 7.5524 -10.7844 8.0898 20 7 8.1441 -11.6401 7.2853 21 14 7.6961 -10.9897 9.9409 22 1 6.5839 -11.8421 10.4323 23 1 8.9942 -11.6325 10.2682 24 1 7.6248 -9.6578 10.5937 25 6 3.9348 -5.5769 0.4750 26 6 4.4095 -4.1649 0.1084 27 16 2.1729 -0.9306 1.4285 28 1 -0.3633 -1.0263 0.0550 29 1 -0.3632 0.5608 0.8612 30 1 -0.3633 0.4654 -0.9162 31 1 1.2353 -1.1347 -1.8093 32 1 2.6972 -0.1261 -1.8082 33 1 4.9122 -3.2477 2.7428 34 1 3.2533 -2.6313 2.9598 35 1 2.3109 -4.8549 2.6856 36 1 3.6486 -5.0041 3.8526 37 1 5.3538 -6.0553 4.3618 38 1 3.8904 -7.0687 4.3637 39 1 5.2665 -9.0576 3.8175 40 1 6.7301 -8.0446 3.8156 41 1 6.3257 -7.4544 6.1894 42 1 4.8620 -8.4673 6.1921 43 1 6.2386 -10.4565 5.6458 44 1 7.7018 -9.4431 5.6432 45 1 8.6561 -12.3773 7.6532 46 1 2.8935 -5.7017 0.1779 47 1 4.5522 -6.3148 -0.0372 48 1 4.1495 -3.9489 -0.9278 49 1 5.4895 -4.0941 0.2371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806933407.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:34 Heat of formation + Delta-G solvation = -18.087208 kcal Electronic energy + Delta-G solvation = -26538.570236 eV Core-core repulsion = 22819.462096 eV Total energy + Delta-G solvation = -3719.108140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47010 -38.89201 -37.55429 -35.03022 -34.89973 -32.78836 -32.59504 -31.93682 -29.78992 -28.41924 -26.46137 -25.72099 -24.34992 -23.68491 -22.69688 -21.83307 -20.39604 -19.97080 -19.14368 -18.14373 -17.00922 -16.41192 -16.21764 -16.05495 -15.95811 -15.80095 -15.58504 -15.06591 -14.70240 -14.45149 -14.16284 -14.06304 -13.85692 -13.47937 -13.18755 -12.96772 -12.80859 -12.58043 -12.25648 -12.12728 -12.06963 -11.97300 -11.87589 -11.67895 -11.61453 -11.48077 -11.00856 -10.98501 -10.54803 -10.50098 -10.40424 -9.82277 -9.61396 -9.56707 -9.27060 -9.22280 -8.97922 -8.56657 -8.29940 -8.18997 -5.94671 -3.97232 0.74491 1.50186 1.77593 2.29717 2.62767 2.85270 3.34355 3.40457 3.43463 3.86072 4.10603 4.16510 4.34741 4.46996 4.49913 4.58267 4.61047 4.72330 4.82926 4.91699 4.96491 5.04788 5.08264 5.15318 5.21326 5.23721 5.28472 5.32843 5.35852 5.40718 5.47219 5.50580 5.58647 5.81655 6.12416 6.14247 6.20216 6.30575 6.54085 6.72472 6.83391 7.00538 7.17187 7.23141 7.44046 7.74598 7.90515 8.06578 8.13714 8.48308 9.10458 9.66401 11.16597 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.001705 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.128503 B =16418.283092 C =17203.825410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 H 0.114 0.886 4 C 0.073 3.927 5 N -0.614 5.614 6 C 0.444 3.556 7 N -0.582 5.582 8 C 0.111 3.889 9 C 0.094 3.906 10 N -0.622 5.622 11 C 0.516 3.484 12 O -0.531 6.531 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.098 3.902 26 C 0.117 3.883 27 S -0.205 6.205 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 26.702 -17.004 35.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.213 4.213 3 H 0.132 0.868 4 C -0.061 4.061 5 N -0.345 5.345 6 C 0.058 3.942 7 N -0.302 5.302 8 C -0.013 4.013 9 C -0.030 4.030 10 N -0.358 5.358 11 C 0.306 3.694 12 O -0.406 6.406 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.026 4.026 26 C -0.008 4.008 27 S 0.022 5.978 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.683 25.916 -16.976 34.724 hybrid contribution -0.125 0.271 0.363 0.471 sum -15.809 26.187 -16.612 34.809 Atomic orbital electron populations 1.21909 0.91109 1.03404 1.02929 1.24693 1.00509 1.02276 0.93806 0.86798 1.22541 0.97206 0.89703 0.96617 1.69800 1.27909 1.23162 1.13622 1.23411 0.91190 0.90060 0.89548 1.45937 1.52832 1.25477 1.05992 1.22249 1.02920 0.97495 0.78644 1.22229 0.97842 0.87401 0.95555 1.48141 1.52827 1.28318 1.06467 1.21168 0.76843 0.79469 0.91936 1.90704 1.45788 1.42556 1.61556 1.21837 1.03103 1.02241 0.90625 1.21467 0.99231 0.95174 0.98277 1.21648 1.00366 1.00725 0.92017 1.19098 0.94687 0.91833 0.96150 1.21284 1.31430 1.10923 0.92261 0.92754 1.25041 0.95713 0.96001 0.97807 1.69972 1.33791 1.15236 1.34414 0.86613 0.77372 0.78190 0.85914 1.20721 1.21265 1.19935 1.21974 1.02349 0.96839 0.81461 1.22094 0.96783 0.86695 0.95217 1.86624 1.63314 1.31078 1.16786 0.91419 0.91459 0.90817 0.89028 0.89237 0.90002 0.88689 0.90575 0.87617 0.89086 0.89080 0.91784 0.91786 0.93469 0.93474 0.96594 0.96575 0.93054 0.91223 0.87584 0.87668 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.56 9.08 37.16 0.34 -0.22 16 2 C -0.08 -0.46 3.99 -26.38 -0.11 -0.56 16 3 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.07 0.49 7.25 -4.71 -0.03 0.46 16 5 N -0.61 -5.90 9.84 -62.20 -0.61 -6.52 16 6 C 0.44 4.09 7.96 -89.84 -0.72 3.38 16 7 N -0.58 -4.95 3.02 -173.38 -0.52 -5.47 16 8 C 0.11 0.76 6.66 -3.37 -0.02 0.74 16 9 C 0.09 0.68 6.52 -3.36 -0.02 0.65 16 10 N -0.62 -6.34 2.95 -172.19 -0.51 -6.85 16 11 C 0.52 7.00 7.70 -10.98 -0.08 6.91 16 12 O -0.53 -9.39 15.39 5.56 0.09 -9.31 16 13 C -0.14 -1.76 4.04 -27.88 -0.11 -1.87 16 14 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.11 -2.23 5.15 -26.73 -0.14 -2.36 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 21 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.10 0.92 6.59 -3.58 -0.02 0.90 16 26 C 0.12 1.00 6.66 -3.57 -0.02 0.98 16 27 S -0.21 -1.62 21.02 -107.50 -2.26 -3.88 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.54 7.65 -51.93 -0.40 0.14 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.59 6.46 -51.93 -0.34 0.25 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.62 5.91 -51.93 -0.31 0.31 16 37 H 0.09 0.97 7.72 -51.93 -0.40 0.57 16 38 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.11 1.14 7.00 -51.93 -0.36 0.78 16 48 H 0.11 0.91 7.20 -51.93 -0.37 0.54 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -34.75 399.97 -12.16 -46.90 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -8.47 Total: -4.69 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.61 Total: -6.32 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.91 Total: -45.57 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.26 Total: -3.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.75 -12.16 -46.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806933407.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.815 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds