Wall clock time and date at job start Tue Mar 31 2020 22:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.71914 * 2 1 4 4 C 1.53677 * 110.65700 * 236.93094 * 2 1 3 5 5 N 1.44598 * 111.15247 * 241.60427 * 4 2 1 6 6 C 1.28263 * 119.97680 * 359.89468 * 5 4 2 7 7 N 1.37566 * 125.05790 * 180.10509 * 6 5 4 8 8 C 1.46967 * 120.59414 * 179.71993 * 7 6 5 9 9 C 1.53809 * 108.40037 * 124.75784 * 8 7 6 10 10 N 1.46972 * 108.57851 * 49.63523 * 9 8 7 11 11 C 1.34780 * 120.59241 * 124.62278 * 10 9 8 12 12 O 1.21278 * 119.99796 * 180.02562 * 11 10 9 13 13 C 1.50704 * 119.99792 * 0.02642 * 11 10 9 14 14 C 1.53002 * 109.46868 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47041 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46770 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46973 * 180.02562 * 16 15 14 18 18 H 1.08007 * 120.00058 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00299 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99900 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47302 * 90.00193 * 21 19 17 23 23 H 1.48500 * 109.46861 * 210.00161 * 21 19 17 24 24 H 1.48503 * 109.47351 * 329.99682 * 21 19 17 25 25 C 1.46961 * 118.81351 * 304.65106 * 10 9 8 26 26 C 1.46970 * 120.59481 * 0.02562 * 7 6 5 27 27 S 1.76759 * 109.92912 * 0.10247 * 6 5 4 28 28 H 1.09005 * 109.46796 * 183.06889 * 1 2 3 29 29 H 1.08998 * 109.46635 * 303.07273 * 1 2 3 30 30 H 1.08999 * 109.46957 * 63.07008 * 1 2 3 31 31 H 1.09002 * 109.13661 * 2.02445 * 4 2 1 32 32 H 1.09001 * 109.13345 * 121.19004 * 4 2 1 33 33 H 1.09000 * 109.60619 * 244.54247 * 8 7 6 34 34 H 1.08996 * 109.61233 * 5.04821 * 8 7 6 35 35 H 1.08994 * 109.74180 * 289.85286 * 9 8 7 36 36 H 1.09003 * 109.67608 * 169.38408 * 9 8 7 37 37 H 1.08998 * 109.47200 * 299.99494 * 13 11 10 38 38 H 1.09005 * 109.47270 * 59.99828 * 13 11 10 39 39 H 1.08996 * 109.47187 * 300.00592 * 14 13 11 40 40 H 1.09005 * 109.46756 * 60.00198 * 14 13 11 41 41 H 1.08998 * 109.47353 * 300.00379 * 15 14 13 42 42 H 1.09005 * 109.46944 * 60.00607 * 15 14 13 43 43 H 1.08998 * 109.47307 * 300.00181 * 16 15 14 44 44 H 1.08998 * 109.47419 * 60.00652 * 16 15 14 45 45 H 0.96997 * 120.00250 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.60583 * 295.47881 * 25 10 9 47 47 H 1.09000 * 109.75117 * 175.05586 * 25 10 9 48 48 H 1.09000 * 109.60686 * 354.94219 * 26 7 6 49 49 H 1.08998 * 109.61204 * 115.28830 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9157 1.0194 0.0000 4 6 2.0722 -0.7846 -1.2050 5 7 2.8563 -1.9217 -0.7773 6 6 3.0184 -2.1543 0.4736 7 7 3.7429 -3.2010 0.9953 8 6 3.8697 -3.3714 2.4496 9 6 3.3908 -4.7863 2.8161 10 7 4.0569 -5.7506 1.9292 11 6 4.7675 -6.7754 2.4404 12 8 5.3131 -7.5646 1.6985 13 6 4.8839 -6.9407 3.9338 14 6 5.7366 -8.1723 4.2456 15 6 5.8554 -8.3398 5.7617 16 6 6.7086 -9.5709 6.0735 17 6 6.8251 -9.7363 7.5668 18 1 6.3388 -9.0338 8.2275 19 6 7.5524 -10.7844 8.0898 20 7 8.1441 -11.6401 7.2853 21 14 7.6961 -10.9897 9.9409 22 1 6.5839 -11.8421 10.4323 23 1 8.9942 -11.6325 10.2682 24 1 7.6248 -9.6578 10.5937 25 6 3.9348 -5.5769 0.4750 26 6 4.4095 -4.1649 0.1084 27 16 2.1729 -0.9306 1.4285 28 1 -0.3633 -1.0263 0.0550 29 1 -0.3632 0.5608 0.8612 30 1 -0.3633 0.4654 -0.9162 31 1 1.2353 -1.1347 -1.8093 32 1 2.6972 -0.1261 -1.8082 33 1 4.9122 -3.2477 2.7428 34 1 3.2533 -2.6313 2.9598 35 1 2.3109 -4.8549 2.6856 36 1 3.6486 -5.0041 3.8526 37 1 5.3538 -6.0553 4.3618 38 1 3.8904 -7.0687 4.3637 39 1 5.2665 -9.0576 3.8175 40 1 6.7301 -8.0446 3.8156 41 1 6.3257 -7.4544 6.1894 42 1 4.8620 -8.4673 6.1921 43 1 6.2386 -10.4565 5.6458 44 1 7.7018 -9.4431 5.6432 45 1 8.6561 -12.3773 7.6532 46 1 2.8935 -5.7017 0.1779 47 1 4.5522 -6.3148 -0.0372 48 1 4.1495 -3.9489 -0.9278 49 1 5.4895 -4.0941 0.2371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806933407.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:33 Heat of formation + Delta-G solvation = -39.133941 kcal Electronic energy + Delta-G solvation = -26539.482891 eV Core-core repulsion = 22819.462096 eV Total energy + Delta-G solvation = -3720.020795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35978 -39.66019 -38.24151 -36.63545 -35.72646 -34.63176 -33.19617 -32.80542 -31.33296 -29.21682 -27.55188 -26.82673 -25.30859 -24.33169 -23.90816 -22.77783 -21.77394 -21.03376 -19.89861 -18.88945 -18.41401 -17.81549 -17.15894 -17.01015 -16.78583 -16.49394 -16.44052 -16.17538 -15.87724 -15.67815 -14.91660 -14.77269 -14.59662 -14.54697 -14.49939 -13.70938 -13.65231 -13.57846 -13.52544 -13.29509 -13.19776 -12.81383 -12.74900 -12.60307 -12.56226 -12.44655 -12.31437 -12.24173 -12.11902 -12.10311 -11.49701 -11.35302 -11.31151 -11.12436 -10.75012 -10.53352 -10.17806 -10.07980 -9.21431 -8.81034 -8.17077 -6.29135 0.17880 0.97411 1.13767 1.41611 1.43749 1.54747 1.60118 1.64436 2.07596 2.43226 3.15735 3.37579 3.47018 3.64480 3.75512 3.79049 3.94481 4.03999 4.08855 4.13688 4.15252 4.24364 4.28616 4.40718 4.52089 4.60046 4.63650 4.69366 4.70262 4.72975 4.78139 4.81031 4.84118 4.88476 4.89538 4.91580 5.19567 5.20857 5.34017 5.38839 5.42888 5.56714 5.59081 5.80640 5.90228 6.06944 6.26959 6.30881 6.84775 6.89597 7.13367 7.40499 8.95045 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.001705 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.128503 B =16418.283092 C =17203.825410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 H 0.128 0.872 4 C 0.068 3.932 5 N -0.640 5.640 6 C 0.434 3.566 7 N -0.586 5.586 8 C 0.112 3.888 9 C 0.092 3.908 10 N -0.613 5.613 11 C 0.514 3.486 12 O -0.584 6.584 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.259 1.259 25 C 0.101 3.899 26 C 0.128 3.872 27 S -0.218 6.218 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.062 0.938 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.262 0.738 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.041 29.393 -15.474 37.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.205 4.205 3 H 0.146 0.854 4 C -0.065 4.065 5 N -0.371 5.371 6 C 0.048 3.952 7 N -0.307 5.307 8 C -0.011 4.011 9 C -0.031 4.031 10 N -0.347 5.347 11 C 0.305 3.695 12 O -0.464 6.464 13 C -0.167 4.167 14 C -0.134 4.134 15 C -0.132 4.132 16 C -0.020 4.020 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.182 1.182 25 C -0.023 4.023 26 C 0.002 3.998 27 S 0.009 5.991 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.120 0.880 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.528 28.671 -15.440 36.981 hybrid contribution 0.401 -0.515 -0.208 0.685 sum -17.128 28.155 -15.648 36.482 Atomic orbital electron populations 1.21892 0.89917 1.02998 1.04097 1.24813 1.01365 1.02311 0.91974 0.85370 1.22622 0.97401 0.89339 0.97096 1.69792 1.28615 1.24481 1.14221 1.23579 0.91364 0.90401 0.89835 1.46042 1.52761 1.25339 1.06556 1.22327 1.03439 0.97483 0.77845 1.22494 0.98125 0.86593 0.95933 1.48148 1.51609 1.27733 1.07181 1.21285 0.76631 0.79562 0.92041 1.90692 1.48291 1.44760 1.62645 1.21727 1.03796 1.00753 0.90406 1.21249 0.99077 0.96992 0.96063 1.21442 0.99785 0.98064 0.93940 1.19070 0.93998 0.93658 0.95261 1.21771 1.31447 1.11289 0.93400 0.91458 1.26090 0.95195 0.95591 1.03543 1.70134 1.34680 1.15977 1.37024 0.85390 0.77445 0.78831 0.79016 1.19772 1.21055 1.18250 1.21945 1.02319 0.96994 0.81056 1.21899 0.96478 0.86125 0.95251 1.86605 1.63274 1.31069 1.18164 0.92488 0.91076 0.88895 0.88341 0.88495 0.89608 0.87551 0.89566 0.85515 0.85980 0.86216 0.94032 0.93921 0.91878 0.91962 0.99803 0.99731 0.92926 0.90619 0.89323 0.87953 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 9.08 71.98 0.65 -0.14 16 2 C -0.07 -0.68 3.99 30.82 0.12 -0.56 16 3 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 4 C 0.07 0.81 7.25 86.96 0.63 1.44 16 5 N -0.64 -11.66 9.84 -350.69 -3.45 -15.11 16 6 C 0.43 7.46 7.96 180.07 1.43 8.89 16 7 N -0.59 -9.21 3.02 -702.47 -2.12 -11.33 16 8 C 0.11 1.29 6.66 86.56 0.58 1.87 16 9 C 0.09 1.06 6.52 86.56 0.56 1.62 16 10 N -0.61 -11.68 2.95 -817.07 -2.41 -14.09 16 11 C 0.51 13.59 7.70 87.66 0.67 14.26 16 12 O -0.58 -21.38 15.39 -3.02 -0.05 -21.42 16 13 C -0.13 -2.96 4.04 29.85 0.12 -2.84 16 14 C -0.10 -3.37 4.50 30.60 0.14 -3.23 16 15 C -0.09 -3.77 5.15 30.59 0.16 -3.62 16 16 C 0.02 0.94 4.97 29.85 0.15 1.09 16 17 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 19 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 20 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 21 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 25 C 0.10 1.88 6.59 86.43 0.57 2.45 16 26 C 0.13 2.14 6.66 86.43 0.58 2.71 16 27 S -0.22 -3.06 21.02 -56.49 -1.19 -4.25 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.10 1.01 7.65 -2.39 -0.02 0.99 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 1.04 6.46 -2.39 -0.02 1.02 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.13 0.96 5.91 -2.39 -0.01 0.94 16 37 H 0.12 2.13 7.72 -2.39 -0.02 2.11 16 38 H 0.12 2.16 7.91 -2.38 -0.02 2.14 16 39 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 40 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 2.00 7.00 -2.39 -0.02 1.99 16 48 H 0.10 1.78 7.20 -2.39 -0.02 1.76 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -78.10 399.97 1.08 -77.02 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.92 Total: 8.17 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 7.06 Total: -6.95 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -7.70 Total: -99.23 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -1.19 Total: -4.25 kcal Total: -78.10 1.08 -77.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806933407.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.887 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds