Wall clock time and date at job start Tue Mar 31 2020 23:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99640 * 2 1 4 4 C 1.46893 * 111.00219 * 123.95435 * 2 1 3 5 5 C 1.53008 * 109.46997 * 66.04606 * 4 2 1 6 6 N 1.46893 * 109.46997 * 179.97438 * 5 4 2 7 7 C 1.46893 * 111.00219 * 293.95583 * 6 5 4 8 8 C 1.46901 * 110.99985 * 169.99835 * 6 5 4 9 9 C 1.53000 * 109.47252 * 190.00075 * 8 6 5 10 10 C 1.52998 * 109.47048 * 180.02562 * 9 8 6 11 11 N 1.46500 * 109.47471 * 180.02562 * 10 9 8 12 12 C 1.34770 * 120.00193 * 179.97438 * 11 10 9 13 13 O 1.21751 * 120.00408 * 0.02562 * 12 11 10 14 14 C 1.46249 * 119.99913 * 179.97438 * 12 11 10 15 15 S 1.75664 * 125.22509 * 0.02668 * 14 12 11 16 16 C 1.75475 * 92.08913 * 179.97438 * 15 14 12 17 17 C 1.32761 * 111.36485 * 359.73353 * 16 15 14 18 18 C 1.39540 * 125.22871 * 180.02562 * 14 12 11 19 19 C 1.40544 * 123.71232 * 359.97438 * 18 14 12 20 20 H 1.08000 * 120.00253 * 23.61406 * 19 18 14 21 21 C 1.40303 * 119.99803 * 203.60431 * 19 18 14 22 22 N 1.30644 * 120.00117 * 9.93283 * 21 19 18 23 23 Si 1.86804 * 120.00211 * 189.92951 * 21 19 18 24 24 H 1.48501 * 109.46965 * 265.13657 * 23 21 19 25 25 H 1.48502 * 109.46732 * 25.13312 * 23 21 19 26 26 H 1.48493 * 109.47219 * 145.13355 * 23 21 19 27 27 H 1.09001 * 109.46959 * 296.04604 * 1 2 3 28 28 H 1.09008 * 109.47110 * 56.04229 * 1 2 3 29 29 H 1.08993 * 109.47041 * 176.04242 * 1 2 3 30 30 H 1.09005 * 109.47094 * 183.95454 * 3 2 1 31 31 H 1.08996 * 109.47383 * 303.95004 * 3 2 1 32 32 H 1.08999 * 109.47421 * 63.95508 * 3 2 1 33 33 H 1.08997 * 109.47134 * 306.04977 * 4 2 1 34 34 H 1.08996 * 109.47523 * 186.04192 * 4 2 1 35 35 H 1.08997 * 109.46876 * 60.00212 * 5 4 2 36 36 H 1.08996 * 109.46646 * 300.00123 * 5 4 2 37 37 H 1.09004 * 109.47205 * 296.04266 * 7 6 5 38 38 H 1.08998 * 109.47304 * 56.04659 * 7 6 5 39 39 H 1.09002 * 109.47236 * 176.04866 * 7 6 5 40 40 H 1.08997 * 109.46819 * 70.00142 * 8 6 5 41 41 H 1.09006 * 109.47118 * 310.00125 * 8 6 5 42 42 H 1.08997 * 109.47154 * 60.00273 * 9 8 6 43 43 H 1.08997 * 109.47173 * 300.00324 * 9 8 6 44 44 H 1.09005 * 109.47622 * 59.99766 * 10 9 8 45 45 H 1.09006 * 109.47084 * 299.99906 * 10 9 8 46 46 H 0.97002 * 119.99378 * 359.97438 * 11 10 9 47 47 H 1.08002 * 124.31673 * 179.97438 * 16 15 14 48 48 H 1.08002 * 122.79004 * 180.23055 * 17 16 15 49 49 H 0.96999 * 120.00236 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6315 -2.2427 0.9702 6 7 2.1585 -3.0087 2.1074 7 6 3.6274 -3.0086 2.1068 8 6 1.6321 -4.3801 2.1075 9 6 1.9967 -5.0663 3.4255 10 6 1.4490 -6.4949 3.4253 11 7 1.7976 -7.1518 4.6876 12 6 1.4161 -8.4246 4.9126 13 8 0.7822 -9.0288 4.0668 14 6 1.7646 -9.0805 6.1725 15 16 2.6718 -8.3413 7.4826 16 6 2.5762 -9.7979 8.4564 17 6 1.9035 -10.7555 7.8296 18 6 1.4275 -10.3896 6.5186 19 6 0.6981 -11.2539 5.6842 20 1 0.6896 -11.0937 4.6162 21 6 -0.0188 -12.3249 6.2386 22 7 -0.1704 -12.4088 7.5335 23 14 -0.7566 -13.6310 5.1254 24 1 -2.1730 -13.2918 4.8357 25 1 0.0088 -13.6877 3.8541 26 1 -0.6921 -14.9516 5.8013 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5741 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5611 -0.3873 2.0627 34 1 3.0797 -0.6611 1.1755 35 1 2.0658 -2.6213 0.0450 36 1 0.5472 -2.3474 0.9322 37 1 3.9905 -3.5223 1.2166 38 1 3.9907 -1.9809 2.1068 39 1 3.9912 -3.5225 2.9966 40 1 2.0661 -4.9359 1.2764 41 1 0.5477 -4.3532 1.9998 42 1 1.5627 -4.5106 4.2567 43 1 3.0810 -5.0933 3.5333 44 1 1.8833 -7.0505 2.5942 45 1 0.3647 -6.4683 3.3174 46 1 2.3029 -6.6705 5.3613 47 1 3.0062 -9.9008 9.4418 48 1 1.7309 -11.7293 8.2636 49 1 -0.6663 -13.1491 7.9169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868395966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:15 Heat of formation + Delta-G solvation = -10.988751 kcal Electronic energy + Delta-G solvation = -26090.333441 eV Core-core repulsion = 22371.533113 eV Total energy + Delta-G solvation = -3718.800328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.86587 -38.26795 -37.06108 -36.04279 -34.33551 -33.04390 -31.55408 -29.43882 -28.87091 -27.97384 -27.17656 -26.18087 -24.62258 -22.80704 -21.87090 -21.02069 -20.80588 -19.87672 -18.74203 -17.48353 -16.53298 -16.16928 -15.82139 -15.58996 -15.45774 -15.33946 -14.95159 -14.63192 -14.41653 -14.02260 -13.91168 -13.63537 -13.49622 -13.04815 -12.71598 -12.45139 -12.37947 -12.26966 -12.16739 -12.03912 -11.95353 -11.80433 -11.71980 -11.42953 -11.35933 -11.32507 -11.07149 -10.98478 -10.88184 -10.60756 -10.41411 -10.12553 -9.63648 -9.23535 -8.77553 -8.55820 -8.41781 -8.19880 -7.47414 -7.12548 -7.03292 -4.51216 2.17597 2.96578 3.00209 3.08799 3.14478 3.30661 3.65264 3.81538 3.86900 3.92010 4.25054 4.46695 4.52988 4.76462 4.86213 4.90541 4.98614 5.05888 5.12580 5.22300 5.25127 5.26299 5.27660 5.34313 5.37920 5.46370 5.49466 5.56036 5.63456 5.67548 5.73183 5.77362 5.92735 6.05233 6.26351 6.29811 6.55116 6.60675 6.70938 6.83357 6.85421 6.88627 7.18292 7.21926 7.35966 7.49647 7.72507 8.37718 8.47963 8.62168 8.80865 9.62258 9.87772 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.001856 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.973924 B =15084.515612 C =16239.441644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.058 3.942 6 N -0.543 5.543 7 C 0.018 3.982 8 C 0.061 3.939 9 C -0.126 4.126 10 C 0.130 3.870 11 N -0.751 5.751 12 C 0.600 3.400 13 O -0.565 6.565 14 C -0.430 4.430 15 S -0.052 6.052 16 C -0.206 4.206 17 C -0.099 4.099 18 C 0.139 3.861 19 C -0.377 4.377 20 H 0.111 0.889 21 C 0.067 3.933 22 N -0.778 5.778 23 Si 0.925 3.075 24 H -0.265 1.265 25 H -0.255 1.255 26 H -0.274 1.274 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.390 0.610 47 H 0.137 0.863 48 H 0.146 0.854 49 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 17.945 -8.626 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.071 4.071 5 C -0.071 4.071 6 N -0.268 5.268 7 C -0.130 4.130 8 C -0.067 4.067 9 C -0.164 4.164 10 C 0.005 3.995 11 N -0.404 5.404 12 C 0.397 3.603 13 O -0.449 6.449 14 C -0.548 4.548 15 S 0.203 5.797 16 C -0.340 4.340 17 C -0.131 4.131 18 C 0.128 3.872 19 C -0.408 4.408 20 H 0.129 0.871 21 C -0.155 4.155 22 N -0.403 5.403 23 Si 0.748 3.252 24 H -0.190 1.190 25 H -0.178 1.178 26 H -0.199 1.199 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.223 0.777 47 H 0.155 0.845 48 H 0.163 0.837 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.777 18.780 -8.837 21.096 hybrid contribution -0.712 -1.595 0.008 1.747 sum 3.065 17.185 -8.830 19.562 Atomic orbital electron populations 1.22456 0.87259 1.02547 1.00531 1.61927 1.08236 1.13901 1.43363 1.22365 1.00742 0.88624 1.00538 1.22120 1.00231 0.93268 0.91485 1.22063 1.00327 0.92807 0.91856 1.61899 1.08076 1.14021 1.42764 1.22499 0.87449 1.01869 1.01179 1.22016 1.00361 0.87311 0.97018 1.21772 1.01560 0.95085 0.98011 1.20982 0.99732 0.91176 0.87580 1.45807 1.60942 1.14807 1.18891 1.16841 0.78170 0.79575 0.85726 1.90646 1.42705 1.64626 1.46895 1.22596 1.31744 0.99257 1.01243 1.82689 1.64371 1.19312 1.13354 1.24944 1.08632 0.97485 1.02955 1.21733 0.96124 1.00017 0.95231 1.17946 0.89583 0.89432 0.90234 1.20036 1.19279 1.04180 0.97268 0.87088 1.26383 0.95068 0.98437 0.95578 1.69674 1.29278 1.28916 1.12419 0.85993 0.80042 0.78274 0.80844 1.19013 1.17818 1.19885 0.95422 0.91449 0.91028 0.91381 0.91325 0.95572 0.93801 0.90707 0.93944 0.90696 0.95460 0.91488 0.90831 0.94362 0.90457 0.90594 0.91446 0.92599 0.92397 0.77711 0.84506 0.83702 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.07 0.56 0.70 16 2 N -0.55 -4.42 5.02 -251.26 -1.26 -5.68 16 3 C 0.03 0.16 9.57 60.07 0.57 0.74 16 4 C 0.06 0.47 4.89 -3.82 -0.02 0.45 16 5 C 0.06 0.52 4.88 -3.82 -0.02 0.50 16 6 N -0.54 -5.43 4.76 -242.92 -1.16 -6.58 16 7 C 0.02 0.16 9.12 60.06 0.55 0.71 16 8 C 0.06 0.66 4.96 -3.82 -0.02 0.64 16 9 C -0.13 -1.54 5.25 -26.73 -0.14 -1.68 16 10 C 0.13 2.11 5.67 -4.04 -0.02 2.08 16 11 N -0.75 -14.74 5.55 -61.75 -0.34 -15.08 16 12 C 0.60 14.93 7.76 -13.05 -0.10 14.83 16 13 O -0.57 -15.69 14.45 5.14 0.07 -15.62 16 14 C -0.43 -11.00 6.51 -35.88 -0.23 -11.24 16 15 S -0.05 -1.12 22.25 -107.50 -2.39 -3.51 16 16 C -0.21 -4.51 11.07 28.86 0.32 -4.19 16 17 C -0.10 -2.42 9.05 -39.12 -0.35 -2.77 16 18 C 0.14 3.75 5.68 -106.21 -0.60 3.15 16 19 C -0.38 -10.26 8.51 -37.94 -0.32 -10.58 16 20 H 0.11 3.17 6.05 -52.49 -0.32 2.86 16 21 C 0.07 1.64 5.39 -17.28 -0.09 1.55 16 22 N -0.78 -18.92 10.80 55.57 0.60 -18.32 16 23 Si 0.93 18.67 29.57 -169.99 -5.03 13.64 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.25 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.41 8.12 -51.92 -0.42 -0.01 16 29 H 0.07 0.50 6.47 -51.93 -0.34 0.17 16 30 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.60 6.39 -51.93 -0.33 0.27 16 35 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.07 0.67 6.34 -51.93 -0.33 0.34 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.52 6.30 -51.93 -0.33 0.20 16 39 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 40 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.08 0.82 7.93 -51.93 -0.41 0.40 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.39 6.99 7.55 -40.82 -0.31 6.68 16 47 H 0.14 2.53 8.06 -52.49 -0.42 2.11 16 48 H 0.15 3.52 6.39 -52.49 -0.34 3.18 16 49 H 0.29 6.24 8.29 -40.82 -0.34 5.91 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -29.70 401.74 -11.37 -41.07 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.00 Total: 9.12 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -2.16 Total: -45.67 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.07 Total: -15.62 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.39 Total: -3.51 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.70 -11.37 -41.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868395966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.082 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds