Wall clock time and date at job start Tue Mar 31 2020 23:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99640 * 2 1 4 4 C 1.46893 * 111.00219 * 123.95435 * 2 1 3 5 5 C 1.53008 * 109.46997 * 66.04606 * 4 2 1 6 6 N 1.46893 * 109.46997 * 179.97438 * 5 4 2 7 7 C 1.46893 * 111.00219 * 293.95583 * 6 5 4 8 8 C 1.46901 * 110.99985 * 169.99835 * 6 5 4 9 9 C 1.53000 * 109.47252 * 190.00075 * 8 6 5 10 10 C 1.52998 * 109.47048 * 180.02562 * 9 8 6 11 11 N 1.46500 * 109.47471 * 180.02562 * 10 9 8 12 12 C 1.34770 * 120.00193 * 179.97438 * 11 10 9 13 13 O 1.21751 * 120.00408 * 0.02562 * 12 11 10 14 14 C 1.46249 * 119.99913 * 179.97438 * 12 11 10 15 15 S 1.75664 * 125.22509 * 0.02668 * 14 12 11 16 16 C 1.75475 * 92.08913 * 179.97438 * 15 14 12 17 17 C 1.32761 * 111.36485 * 359.73353 * 16 15 14 18 18 C 1.39540 * 125.22871 * 180.02562 * 14 12 11 19 19 C 1.40544 * 123.71232 * 359.97438 * 18 14 12 20 20 H 1.08000 * 120.00253 * 23.61406 * 19 18 14 21 21 C 1.40303 * 119.99803 * 203.60431 * 19 18 14 22 22 N 1.30644 * 120.00117 * 9.93283 * 21 19 18 23 23 Si 1.86804 * 120.00211 * 189.92951 * 21 19 18 24 24 H 1.48501 * 109.46965 * 265.13657 * 23 21 19 25 25 H 1.48502 * 109.46732 * 25.13312 * 23 21 19 26 26 H 1.48493 * 109.47219 * 145.13355 * 23 21 19 27 27 H 1.09001 * 109.46959 * 296.04604 * 1 2 3 28 28 H 1.09008 * 109.47110 * 56.04229 * 1 2 3 29 29 H 1.08993 * 109.47041 * 176.04242 * 1 2 3 30 30 H 1.09005 * 109.47094 * 183.95454 * 3 2 1 31 31 H 1.08996 * 109.47383 * 303.95004 * 3 2 1 32 32 H 1.08999 * 109.47421 * 63.95508 * 3 2 1 33 33 H 1.08997 * 109.47134 * 306.04977 * 4 2 1 34 34 H 1.08996 * 109.47523 * 186.04192 * 4 2 1 35 35 H 1.08997 * 109.46876 * 60.00212 * 5 4 2 36 36 H 1.08996 * 109.46646 * 300.00123 * 5 4 2 37 37 H 1.09004 * 109.47205 * 296.04266 * 7 6 5 38 38 H 1.08998 * 109.47304 * 56.04659 * 7 6 5 39 39 H 1.09002 * 109.47236 * 176.04866 * 7 6 5 40 40 H 1.08997 * 109.46819 * 70.00142 * 8 6 5 41 41 H 1.09006 * 109.47118 * 310.00125 * 8 6 5 42 42 H 1.08997 * 109.47154 * 60.00273 * 9 8 6 43 43 H 1.08997 * 109.47173 * 300.00324 * 9 8 6 44 44 H 1.09005 * 109.47622 * 59.99766 * 10 9 8 45 45 H 1.09006 * 109.47084 * 299.99906 * 10 9 8 46 46 H 0.97002 * 119.99378 * 359.97438 * 11 10 9 47 47 H 1.08002 * 124.31673 * 179.97438 * 16 15 14 48 48 H 1.08002 * 122.79004 * 180.23055 * 17 16 15 49 49 H 0.96999 * 120.00236 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6315 -2.2427 0.9702 6 7 2.1585 -3.0087 2.1074 7 6 3.6274 -3.0086 2.1068 8 6 1.6321 -4.3801 2.1075 9 6 1.9967 -5.0663 3.4255 10 6 1.4490 -6.4949 3.4253 11 7 1.7976 -7.1518 4.6876 12 6 1.4161 -8.4246 4.9126 13 8 0.7822 -9.0288 4.0668 14 6 1.7646 -9.0805 6.1725 15 16 2.6718 -8.3413 7.4826 16 6 2.5762 -9.7979 8.4564 17 6 1.9035 -10.7555 7.8296 18 6 1.4275 -10.3896 6.5186 19 6 0.6981 -11.2539 5.6842 20 1 0.6896 -11.0937 4.6162 21 6 -0.0188 -12.3249 6.2386 22 7 -0.1704 -12.4088 7.5335 23 14 -0.7566 -13.6310 5.1254 24 1 -2.1730 -13.2918 4.8357 25 1 0.0088 -13.6877 3.8541 26 1 -0.6921 -14.9516 5.8013 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5741 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5611 -0.3873 2.0627 34 1 3.0797 -0.6611 1.1755 35 1 2.0658 -2.6213 0.0450 36 1 0.5472 -2.3474 0.9322 37 1 3.9905 -3.5223 1.2166 38 1 3.9907 -1.9809 2.1068 39 1 3.9912 -3.5225 2.9966 40 1 2.0661 -4.9359 1.2764 41 1 0.5477 -4.3532 1.9998 42 1 1.5627 -4.5106 4.2567 43 1 3.0810 -5.0933 3.5333 44 1 1.8833 -7.0505 2.5942 45 1 0.3647 -6.4683 3.3174 46 1 2.3029 -6.6705 5.3613 47 1 3.0062 -9.9008 9.4418 48 1 1.7309 -11.7293 8.2636 49 1 -0.6663 -13.1491 7.9169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868395966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:14 Heat of formation + Delta-G solvation = -31.561257 kcal Electronic energy + Delta-G solvation = -26091.225531 eV Core-core repulsion = 22371.533113 eV Total energy + Delta-G solvation = -3719.692419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.22430 -39.46446 -38.03008 -37.66739 -35.84776 -34.90855 -32.81613 -30.87665 -30.09212 -28.62084 -28.32582 -27.50761 -25.73200 -24.05609 -23.28680 -22.09384 -21.66377 -21.44202 -20.60996 -19.24946 -17.67694 -17.40649 -17.11150 -16.98307 -16.47296 -16.36885 -15.97578 -15.92649 -15.70118 -15.41044 -15.11237 -14.83383 -14.65066 -14.21752 -14.01098 -13.91017 -13.67329 -13.36612 -13.24285 -13.10951 -13.03740 -12.98237 -12.84054 -12.74614 -12.65226 -12.46678 -12.38079 -12.12609 -12.07278 -12.01845 -11.68044 -11.58404 -11.42186 -11.06258 -10.38472 -9.93572 -9.39841 -9.34500 -9.30949 -8.93343 -8.85807 -6.45132 0.31123 1.32882 1.34384 1.37592 1.48559 1.78539 1.97896 2.17299 2.44081 2.54946 2.77947 3.31520 3.32028 3.83105 3.97696 4.09467 4.09891 4.18766 4.29690 4.37443 4.44890 4.48306 4.50477 4.55787 4.60241 4.62359 4.68715 4.71688 4.74564 4.87453 4.90015 4.97855 5.00623 5.00736 5.03410 5.08922 5.15880 5.23678 5.29299 5.39915 5.57890 5.74502 5.84824 5.91385 6.01578 6.07176 6.17354 6.40017 6.58156 6.72355 6.97941 7.74262 8.07611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.001856 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.973924 B =15084.515612 C =16239.441644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.562 5.562 3 C 0.025 3.975 4 C 0.064 3.936 5 C 0.062 3.938 6 N -0.548 5.548 7 C 0.017 3.983 8 C 0.065 3.935 9 C -0.109 4.109 10 C 0.130 3.870 11 N -0.736 5.736 12 C 0.590 3.410 13 O -0.605 6.605 14 C -0.468 4.468 15 S 0.010 5.990 16 C -0.192 4.192 17 C -0.129 4.129 18 C 0.110 3.890 19 C -0.417 4.417 20 H 0.083 0.917 21 C 0.035 3.965 22 N -0.793 5.793 23 Si 0.989 3.011 24 H -0.264 1.264 25 H -0.266 1.266 26 H -0.247 1.247 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.400 0.600 47 H 0.177 0.823 48 H 0.142 0.858 49 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 19.092 -8.038 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.066 4.066 6 N -0.273 5.273 7 C -0.131 4.131 8 C -0.063 4.063 9 C -0.147 4.147 10 C 0.006 3.994 11 N -0.389 5.389 12 C 0.386 3.614 13 O -0.492 6.492 14 C -0.587 4.587 15 S 0.265 5.735 16 C -0.326 4.326 17 C -0.161 4.161 18 C 0.098 3.902 19 C -0.448 4.448 20 H 0.102 0.898 21 C -0.185 4.185 22 N -0.417 5.417 23 Si 0.809 3.191 24 H -0.189 1.189 25 H -0.190 1.190 26 H -0.170 1.170 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.235 0.765 47 H 0.195 0.805 48 H 0.159 0.841 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.452 19.991 -8.224 22.070 hybrid contribution -0.860 -1.811 -0.147 2.010 sum 3.592 18.180 -8.371 20.334 Atomic orbital electron populations 1.22473 0.86841 1.02577 1.00910 1.61949 1.08775 1.14831 1.43132 1.22411 1.01065 0.87837 1.00985 1.22022 1.00376 0.92675 0.91329 1.22031 1.00195 0.93180 0.91203 1.61891 1.08796 1.13305 1.43286 1.22541 0.86716 1.02704 1.01101 1.21916 1.00536 0.87861 0.95991 1.21608 1.01818 0.92240 0.99004 1.21133 0.99374 0.93216 0.85681 1.45646 1.59760 1.13300 1.20170 1.17054 0.78005 0.80936 0.85419 1.90609 1.44508 1.65971 1.48094 1.23072 1.32664 0.99902 1.03042 1.82280 1.62486 1.17916 1.10781 1.25457 1.06275 0.96766 1.04067 1.21618 0.98537 1.00898 0.95066 1.18416 0.89930 0.90172 0.91651 1.20020 1.21813 1.06657 0.96261 0.89848 1.27058 0.94844 0.99542 0.97075 1.69650 1.29126 1.29720 1.13230 0.85078 0.78746 0.76662 0.78609 1.18850 1.18989 1.17049 0.95541 0.90472 0.91303 0.90919 0.90431 0.95486 0.94549 0.90330 0.94470 0.90796 0.95516 0.90268 0.90876 0.94417 0.90363 0.90346 0.90508 0.93334 0.93339 0.76532 0.80547 0.84087 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 127.69 1.19 1.45 16 2 N -0.56 -8.31 5.02 -948.85 -4.76 -13.08 16 3 C 0.03 0.28 9.57 127.69 1.22 1.50 16 4 C 0.06 0.98 4.89 86.31 0.42 1.41 16 5 C 0.06 1.05 4.88 86.31 0.42 1.47 16 6 N -0.55 -10.19 4.76 -922.47 -4.39 -14.58 16 7 C 0.02 0.28 9.12 127.69 1.17 1.44 16 8 C 0.07 1.34 4.96 86.30 0.43 1.77 16 9 C -0.11 -2.51 5.25 30.59 0.16 -2.35 16 10 C 0.13 4.22 5.67 86.38 0.49 4.71 16 11 N -0.74 -28.93 5.55 -467.47 -2.59 -31.53 16 12 C 0.59 30.14 7.76 86.33 0.67 30.81 16 13 O -0.61 -35.22 14.45 -4.51 -0.07 -35.29 16 14 C -0.47 -24.34 6.51 24.67 0.16 -24.18 16 15 S 0.01 0.40 22.25 -56.49 -1.26 -0.85 16 16 C -0.19 -8.01 11.07 66.64 0.74 -7.27 16 17 C -0.13 -6.32 9.05 22.61 0.20 -6.11 16 18 C 0.11 6.08 5.68 -20.89 -0.12 5.96 16 19 C -0.42 -23.71 8.51 23.34 0.20 -23.52 16 20 H 0.08 5.09 6.05 -2.91 -0.02 5.07 16 21 C 0.03 1.74 5.39 85.37 0.46 2.20 16 22 N -0.79 -38.75 10.80 21.89 0.24 -38.52 16 23 Si 0.99 38.78 29.57 68.60 2.03 40.81 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 27 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.83 8.12 -2.38 -0.02 0.81 16 29 H 0.07 0.91 6.47 -2.39 -0.02 0.90 16 30 H 0.07 0.74 8.12 -2.38 -0.02 0.72 16 31 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.04 0.61 8.12 -2.39 -0.02 0.59 16 34 H 0.08 1.13 6.39 -2.39 -0.02 1.11 16 35 H 0.04 0.68 8.12 -2.39 -0.02 0.66 16 36 H 0.07 1.26 6.34 -2.39 -0.02 1.25 16 37 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.08 1.08 6.30 -2.39 -0.02 1.07 16 39 H 0.07 1.19 6.47 -2.39 -0.02 1.17 16 40 H 0.04 0.78 8.12 -2.39 -0.02 0.76 16 41 H 0.08 1.59 7.93 -2.38 -0.02 1.57 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.08 1.66 6.55 -2.39 -0.02 1.65 16 44 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.40 13.92 7.55 -92.71 -0.70 13.22 16 47 H 0.18 5.86 8.06 -2.91 -0.02 5.84 16 48 H 0.14 6.90 6.39 -2.91 -0.02 6.89 16 49 H 0.30 12.89 8.29 -92.71 -0.77 12.12 16 Total: -1.00 -66.18 401.74 -2.75 -68.92 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.25 Total: 34.83 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 7.81 Total: -10.71 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -11.51 Total: -97.70 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.07 Total: -35.29 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.26 Total: -0.85 kcal Total: -66.18 -2.75 -68.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868395966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.360 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds