Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 115.56412 * 2 1 4 4 C 1.53008 * 117.49704 * 214.31842 * 2 1 3 5 5 C 1.53005 * 60.00074 * 252.50948 * 4 2 1 6 6 C 1.50703 * 117.49939 * 107.50867 * 5 4 2 7 7 O 1.20819 * 119.99951 * 258.03076 * 6 5 4 8 8 O 1.34220 * 119.99539 * 78.03242 * 6 5 4 9 9 C 1.45208 * 116.99959 * 180.13880 * 8 6 5 10 10 C 1.53001 * 109.46745 * 59.99864 * 9 8 6 11 11 C 1.52998 * 109.47107 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.46756 * 299.99987 * 9 8 6 13 13 C 1.50698 * 117.49616 * 252.51359 * 5 4 2 14 14 O 1.21284 * 120.00012 * 120.89628 * 13 5 4 15 15 N 1.34779 * 119.99886 * 300.89260 * 13 5 4 16 16 C 1.47022 * 125.64724 * 353.99411 * 15 13 5 17 17 C 1.54319 * 107.27052 * 178.97902 * 16 15 13 18 18 C 1.55159 * 102.94338 * 337.80734 * 17 16 15 19 19 O 1.42901 * 111.03810 * 277.41812 * 18 17 16 20 20 C 1.50696 * 111.00292 * 153.57569 * 18 17 16 21 21 H 1.08005 * 119.99815 * 247.80663 * 20 18 17 22 22 C 1.37876 * 120.00278 * 67.80718 * 20 18 17 23 23 N 1.31515 * 119.99549 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00359 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47252 * 60.00101 * 24 22 20 26 26 H 1.48500 * 109.47455 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47294 * 300.00018 * 24 22 20 28 28 C 1.47420 * 125.64645 * 174.04341 * 15 13 5 29 29 H 1.08998 * 109.46651 * 274.30569 * 1 2 3 30 30 H 1.08998 * 109.46934 * 34.30183 * 1 2 3 31 31 H 1.08995 * 109.47726 * 154.30779 * 1 2 3 32 32 H 1.08999 * 117.50055 * 145.01786 * 4 2 1 33 33 H 1.09001 * 117.51532 * 359.97438 * 4 2 1 34 34 H 1.09002 * 109.46872 * 60.00170 * 10 9 8 35 35 H 1.08995 * 109.46548 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.47200 * 300.00270 * 10 9 8 37 37 H 1.09003 * 109.46841 * 60.00495 * 11 9 8 38 38 H 1.08993 * 109.46828 * 179.97438 * 11 9 8 39 39 H 1.08995 * 109.47802 * 300.00212 * 11 9 8 40 40 H 1.09000 * 109.47037 * 60.00261 * 12 9 8 41 41 H 1.09000 * 109.46674 * 179.97438 * 12 9 8 42 42 H 1.08994 * 109.47824 * 299.99758 * 12 9 8 43 43 H 1.09002 * 109.87944 * 59.55861 * 16 15 13 44 44 H 1.08999 * 110.01428 * 298.47360 * 16 15 13 45 45 H 1.09004 * 110.72238 * 219.44448 * 17 16 15 46 46 H 1.08993 * 110.72018 * 96.17397 * 17 16 15 47 47 H 0.96700 * 113.99799 * 292.20984 * 19 18 17 48 48 H 0.97005 * 119.99903 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.36838 * 85.25237 * 28 15 13 50 50 H 1.08993 * 110.36831 * 322.92337 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7652 5 6 2.2365 -1.1212 0.7649 6 6 1.3724 -2.1412 1.4606 7 8 0.3098 -1.8119 1.9321 8 8 1.7833 -3.4153 1.5564 9 6 0.8985 -4.3439 2.2372 10 6 -0.4439 -4.3988 1.5051 11 6 1.5310 -5.7370 2.2467 12 6 0.6760 -3.8743 3.6762 13 6 3.5293 -0.7813 1.4606 14 8 3.5796 0.1637 2.2191 15 7 4.6297 -1.5277 1.2400 16 6 4.6807 -2.7660 0.4492 17 6 6.1455 -3.2519 0.4527 18 6 6.9401 -1.9579 0.7716 19 8 7.1457 -1.1783 -0.4083 20 6 8.2526 -2.2804 1.4381 21 1 8.4155 -2.0072 2.4702 22 6 9.2453 -2.9242 0.7304 23 7 9.0466 -3.2573 -0.5263 24 14 10.8725 -3.3234 1.5563 25 1 10.6311 -4.2099 2.7229 26 1 11.7634 -4.0119 0.5881 27 1 11.5165 -2.0663 2.0148 28 6 5.9813 -1.2380 1.7525 29 1 -0.3632 0.0772 1.0248 30 1 -0.3633 0.8489 -0.5791 31 1 -0.3634 -0.9260 -0.4455 32 1 3.1715 -0.8751 -1.2685 33 1 1.6114 -1.8588 -1.2683 34 1 -0.2852 -4.7333 0.4799 35 1 -1.1079 -5.0961 2.0158 36 1 -0.8946 -3.4064 1.4979 37 1 2.4875 -5.6982 2.7680 38 1 0.8670 -6.4339 2.7581 39 1 1.6893 -6.0713 1.2215 40 1 0.2252 -2.8820 3.6689 41 1 0.0114 -4.5711 4.1870 42 1 1.6322 -3.8352 4.1977 43 1 4.3587 -2.5666 -0.5729 44 1 4.0380 -3.5227 0.8991 45 1 6.4240 -3.6443 -0.5253 46 1 6.3013 -4.0012 1.2287 47 1 7.7392 -1.5886 -1.0522 48 1 9.7452 -3.7100 -1.0244 49 1 6.0988 -1.6376 2.7598 50 1 6.1675 -0.1641 1.7454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869075947.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -144.489499 kcal Electronic energy + Delta-G solvation = -32266.363197 eV Core-core repulsion = 28066.728220 eV Total energy + Delta-G solvation = -4199.634977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27677 -39.65942 -38.02141 -37.01104 -36.15954 -34.35298 -34.11748 -32.16895 -30.08763 -28.99033 -28.15939 -27.57235 -27.52732 -25.81809 -24.95622 -23.07112 -21.74591 -20.76206 -20.26956 -19.56722 -18.75652 -17.45733 -17.04740 -16.70191 -16.34134 -15.73997 -15.35269 -15.17856 -14.99873 -14.56762 -14.29191 -14.17716 -13.80924 -13.72307 -13.39097 -13.12244 -13.04188 -12.60590 -12.55302 -12.33867 -12.24415 -12.06342 -12.04492 -12.01641 -11.79564 -11.62250 -11.57261 -11.36913 -11.34701 -11.31445 -10.88854 -10.73748 -10.60094 -10.52136 -10.49305 -10.33837 -10.06036 -9.79867 -9.50086 -9.38786 -8.70714 -8.24781 -8.01926 -6.32929 -4.40512 2.00152 2.40077 2.93369 3.19600 3.24649 3.27714 3.37447 3.52719 4.23588 4.39848 4.54077 4.55273 4.57213 4.61277 4.75194 4.82724 4.95768 5.20229 5.31031 5.34266 5.37340 5.52844 5.55802 5.58020 5.60226 5.66366 5.67579 5.75656 5.78735 5.80461 5.86970 5.93108 5.98936 6.06033 6.07880 6.14164 6.21984 6.30922 6.39576 6.48918 6.61335 6.87989 6.93582 7.28403 7.30014 7.70546 7.76603 7.94773 8.04511 8.49716 8.61552 9.28340 9.43932 10.74803 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003667 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.293916 B = 7633.566980 C = 8651.333299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 H 0.123 0.877 4 C -0.139 4.139 5 C -0.163 4.163 6 C 0.518 3.482 7 O -0.489 6.489 8 O -0.338 6.338 9 C 0.116 3.884 10 C -0.182 4.182 11 C -0.141 4.141 12 C -0.184 4.184 13 C 0.565 3.435 14 O -0.540 6.540 15 N -0.592 5.592 16 C 0.098 3.902 17 C -0.138 4.138 18 C 0.251 3.749 19 O -0.585 6.585 20 C -0.536 4.536 21 H 0.065 0.935 22 C 0.074 3.926 23 N -0.898 5.898 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.119 3.881 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.386 0.614 48 H 0.270 0.730 49 H 0.072 0.928 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 -4.230 -0.700 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.107 4.107 3 H 0.141 0.859 4 C -0.176 4.176 5 C -0.167 4.167 6 C 0.360 3.640 7 O -0.376 6.376 8 O -0.256 6.256 9 C 0.080 3.920 10 C -0.239 4.239 11 C -0.198 4.198 12 C -0.241 4.241 13 C 0.350 3.650 14 O -0.418 6.418 15 N -0.323 5.323 16 C -0.025 4.025 17 C -0.177 4.177 18 C 0.210 3.790 19 O -0.395 6.395 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.129 4.129 23 N -0.537 5.537 24 Si 0.731 3.269 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.002 4.002 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.238 0.762 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.135 -3.333 0.030 17.456 hybrid contribution 1.302 -0.934 0.188 1.614 sum -15.833 -4.268 0.218 16.399 Atomic orbital electron populations 1.21491 0.91293 1.01623 1.03636 1.22552 0.96289 0.94346 0.97547 0.85900 1.23426 1.03959 1.01165 0.89015 1.21027 0.97778 1.01361 0.96576 1.21758 0.84231 0.81587 0.76419 1.90531 1.22949 1.80369 1.43754 1.86621 1.49391 1.18894 1.70647 1.22225 0.89323 0.88461 0.92002 1.22487 0.96253 1.04525 1.00611 1.21855 1.01848 0.92657 1.03486 1.22493 1.02989 1.03965 0.94666 1.18398 0.82378 0.82454 0.81755 1.90691 1.84376 1.29943 1.36837 1.48508 1.08447 1.24952 1.50358 1.22291 1.00246 0.85276 0.94669 1.23202 0.90897 1.00587 1.03033 1.19559 0.91231 0.85215 0.83015 1.86085 1.71010 1.50296 1.32102 1.21443 0.98758 1.38534 0.98739 0.91696 1.24969 0.98884 0.94100 0.94910 1.69550 1.34604 1.40959 1.08628 0.86460 0.82554 0.78717 0.79170 1.20038 1.21087 1.19971 1.22456 0.79053 1.01195 0.97481 0.90065 0.91786 0.92771 0.86454 0.87337 0.91946 0.91082 0.89893 0.91129 0.90436 0.91276 0.89863 0.91081 0.91794 0.92282 0.91599 0.89864 0.91406 0.76191 0.92000 0.90956 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.61 37.16 0.32 -1.07 16 2 C -0.09 -1.17 6.08 -90.61 -0.55 -1.73 16 3 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 4 C -0.14 -1.75 8.28 -26.72 -0.22 -1.97 16 5 C -0.16 -2.56 1.74 -156.80 -0.27 -2.83 16 6 C 0.52 7.88 6.24 36.01 0.22 8.11 16 7 O -0.49 -7.56 9.82 -18.75 -0.18 -7.75 16 8 O -0.34 -4.81 8.37 -39.23 -0.33 -5.14 16 9 C 0.12 1.33 1.13 -90.62 -0.10 1.23 16 10 C -0.18 -1.82 8.37 37.16 0.31 -1.50 16 11 C -0.14 -1.33 8.85 37.16 0.33 -1.00 16 12 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 13 C 0.56 11.10 6.96 -10.99 -0.08 11.03 16 14 O -0.54 -12.32 17.38 5.55 0.10 -12.23 16 15 N -0.59 -11.77 3.33 -170.52 -0.57 -12.34 16 16 C 0.10 1.76 6.32 -3.07 -0.02 1.74 16 17 C -0.14 -2.90 5.64 -24.90 -0.14 -3.04 16 18 C 0.25 5.90 0.89 -89.62 -0.08 5.82 16 19 O -0.58 -14.51 13.18 -35.23 -0.46 -14.98 16 20 C -0.54 -13.66 8.25 -34.44 -0.28 -13.94 16 21 H 0.06 1.65 7.77 -52.48 -0.41 1.24 16 22 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 23 N -0.90 -22.51 10.78 55.43 0.60 -21.91 16 24 Si 0.90 19.80 29.54 -169.99 -5.02 14.77 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.12 2.65 6.06 -2.53 -0.02 2.64 16 29 H 0.08 1.04 6.80 -51.93 -0.35 0.69 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.12 1.53 7.68 -51.93 -0.40 1.14 16 33 H 0.11 1.14 8.05 -51.93 -0.42 0.72 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.96 5.89 -51.93 -0.31 0.65 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.13 5.88 -51.93 -0.31 0.82 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.99 6.62 -51.93 -0.34 0.65 16 44 H 0.07 1.10 6.56 -51.93 -0.34 0.76 16 45 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 46 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 47 H 0.39 9.69 6.93 45.56 0.32 10.00 16 48 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 49 H 0.07 1.57 8.01 -51.93 -0.42 1.16 16 50 H 0.07 1.67 8.10 -51.93 -0.42 1.25 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -28.65 394.45 -7.86 -36.51 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.57 Total: 13.72 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.36 Total: 3.40 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.03 Total: -34.25 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.88 Total: -40.09 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.65 -7.86 -36.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869075947.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.983 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds