Wall clock time and date at job start Tue Mar 31 2020 22:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 115.56412 * 2 1 4 4 C 1.53008 * 117.49704 * 214.31842 * 2 1 3 5 5 C 1.53005 * 60.00074 * 252.50948 * 4 2 1 6 6 C 1.50703 * 117.49939 * 107.50867 * 5 4 2 7 7 O 1.20819 * 119.99951 * 258.03076 * 6 5 4 8 8 O 1.34220 * 119.99539 * 78.03242 * 6 5 4 9 9 C 1.45208 * 116.99959 * 180.13880 * 8 6 5 10 10 C 1.53001 * 109.46745 * 59.99864 * 9 8 6 11 11 C 1.52998 * 109.47107 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.46756 * 299.99987 * 9 8 6 13 13 C 1.50698 * 117.49616 * 252.51359 * 5 4 2 14 14 O 1.21284 * 120.00012 * 120.89628 * 13 5 4 15 15 N 1.34779 * 119.99886 * 300.89260 * 13 5 4 16 16 C 1.47022 * 125.64724 * 353.99411 * 15 13 5 17 17 C 1.54319 * 107.27052 * 178.97902 * 16 15 13 18 18 C 1.55159 * 102.94338 * 337.80734 * 17 16 15 19 19 O 1.42901 * 111.03810 * 277.41812 * 18 17 16 20 20 C 1.50696 * 111.00292 * 153.57569 * 18 17 16 21 21 H 1.08005 * 119.99815 * 247.80663 * 20 18 17 22 22 C 1.37876 * 120.00278 * 67.80718 * 20 18 17 23 23 N 1.31515 * 119.99549 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00359 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47252 * 60.00101 * 24 22 20 26 26 H 1.48500 * 109.47455 * 179.97438 * 24 22 20 27 27 H 1.48507 * 109.47294 * 300.00018 * 24 22 20 28 28 C 1.47420 * 125.64645 * 174.04341 * 15 13 5 29 29 H 1.08998 * 109.46651 * 274.30569 * 1 2 3 30 30 H 1.08998 * 109.46934 * 34.30183 * 1 2 3 31 31 H 1.08995 * 109.47726 * 154.30779 * 1 2 3 32 32 H 1.08999 * 117.50055 * 145.01786 * 4 2 1 33 33 H 1.09001 * 117.51532 * 359.97438 * 4 2 1 34 34 H 1.09002 * 109.46872 * 60.00170 * 10 9 8 35 35 H 1.08995 * 109.46548 * 179.97438 * 10 9 8 36 36 H 1.08996 * 109.47200 * 300.00270 * 10 9 8 37 37 H 1.09003 * 109.46841 * 60.00495 * 11 9 8 38 38 H 1.08993 * 109.46828 * 179.97438 * 11 9 8 39 39 H 1.08995 * 109.47802 * 300.00212 * 11 9 8 40 40 H 1.09000 * 109.47037 * 60.00261 * 12 9 8 41 41 H 1.09000 * 109.46674 * 179.97438 * 12 9 8 42 42 H 1.08994 * 109.47824 * 299.99758 * 12 9 8 43 43 H 1.09002 * 109.87944 * 59.55861 * 16 15 13 44 44 H 1.08999 * 110.01428 * 298.47360 * 16 15 13 45 45 H 1.09004 * 110.72238 * 219.44448 * 17 16 15 46 46 H 1.08993 * 110.72018 * 96.17397 * 17 16 15 47 47 H 0.96700 * 113.99799 * 292.20984 * 19 18 17 48 48 H 0.97005 * 119.99903 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.36838 * 85.25237 * 28 15 13 50 50 H 1.08993 * 110.36831 * 322.92337 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7652 5 6 2.2365 -1.1212 0.7649 6 6 1.3724 -2.1412 1.4606 7 8 0.3098 -1.8119 1.9321 8 8 1.7833 -3.4153 1.5564 9 6 0.8985 -4.3439 2.2372 10 6 -0.4439 -4.3988 1.5051 11 6 1.5310 -5.7370 2.2467 12 6 0.6760 -3.8743 3.6762 13 6 3.5293 -0.7813 1.4606 14 8 3.5796 0.1637 2.2191 15 7 4.6297 -1.5277 1.2400 16 6 4.6807 -2.7660 0.4492 17 6 6.1455 -3.2519 0.4527 18 6 6.9401 -1.9579 0.7716 19 8 7.1457 -1.1783 -0.4083 20 6 8.2526 -2.2804 1.4381 21 1 8.4155 -2.0072 2.4702 22 6 9.2453 -2.9242 0.7304 23 7 9.0466 -3.2573 -0.5263 24 14 10.8725 -3.3234 1.5563 25 1 10.6311 -4.2099 2.7229 26 1 11.7634 -4.0119 0.5881 27 1 11.5165 -2.0663 2.0148 28 6 5.9813 -1.2380 1.7525 29 1 -0.3632 0.0772 1.0248 30 1 -0.3633 0.8489 -0.5791 31 1 -0.3634 -0.9260 -0.4455 32 1 3.1715 -0.8751 -1.2685 33 1 1.6114 -1.8588 -1.2683 34 1 -0.2852 -4.7333 0.4799 35 1 -1.1079 -5.0961 2.0158 36 1 -0.8946 -3.4064 1.4979 37 1 2.4875 -5.6982 2.7680 38 1 0.8670 -6.4339 2.7581 39 1 1.6893 -6.0713 1.2215 40 1 0.2252 -2.8820 3.6689 41 1 0.0114 -4.5711 4.1870 42 1 1.6322 -3.8352 4.1977 43 1 4.3587 -2.5666 -0.5729 44 1 4.0380 -3.5227 0.8991 45 1 6.4240 -3.6443 -0.5253 46 1 6.3013 -4.0012 1.2287 47 1 7.7392 -1.5886 -1.0522 48 1 9.7452 -3.7100 -1.0244 49 1 6.0988 -1.6376 2.7598 50 1 6.1675 -0.1641 1.7454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869075947.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:55 Heat of formation + Delta-G solvation = -161.333100 kcal Electronic energy + Delta-G solvation = -32267.093591 eV Core-core repulsion = 28066.728220 eV Total energy + Delta-G solvation = -4200.365370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42662 -41.08093 -39.43103 -38.46925 -37.32793 -36.12555 -35.06973 -34.12360 -31.73798 -30.33024 -29.66442 -28.39810 -28.29735 -27.31072 -26.40571 -24.52666 -23.04295 -22.00754 -21.49688 -21.16422 -19.99246 -19.22737 -18.59993 -17.78633 -17.45317 -17.18191 -16.93634 -16.69052 -16.49155 -16.00081 -15.65121 -15.22113 -15.13559 -14.88151 -14.73178 -14.65528 -14.13556 -13.95165 -13.68557 -13.60496 -13.45992 -13.33117 -13.20996 -13.13348 -13.06147 -12.92828 -12.87414 -12.66210 -12.57030 -12.51773 -12.42615 -12.31162 -12.24843 -11.86988 -11.80224 -11.48031 -11.40746 -11.27772 -10.96056 -10.84060 -10.62259 -10.14642 -9.66364 -8.24557 -6.38724 0.80585 1.23985 1.44544 1.46583 1.52807 1.57995 1.96272 2.34176 2.40792 3.00155 3.27865 3.37770 3.46011 3.64850 3.72780 3.78282 3.81176 3.93974 4.02266 4.22852 4.26755 4.37737 4.38648 4.53925 4.55849 4.59945 4.63214 4.71284 4.75386 4.77563 4.82413 4.86403 4.88298 4.90334 4.92600 5.05428 5.10371 5.18104 5.21900 5.23557 5.27236 5.31151 5.45073 5.50524 5.52546 5.77750 6.04862 6.46136 6.63786 6.66612 6.92850 7.32433 7.46864 8.81757 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003667 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.293916 B = 7633.566980 C = 8651.333299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 H 0.115 0.885 4 C -0.116 4.116 5 C -0.186 4.186 6 C 0.520 3.480 7 O -0.495 6.495 8 O -0.348 6.348 9 C 0.105 3.895 10 C -0.176 4.176 11 C -0.138 4.138 12 C -0.182 4.182 13 C 0.561 3.439 14 O -0.581 6.581 15 N -0.593 5.593 16 C 0.109 3.891 17 C -0.128 4.128 18 C 0.240 3.760 19 O -0.593 6.593 20 C -0.564 4.564 21 H 0.055 0.945 22 C 0.040 3.960 23 N -0.907 5.907 24 Si 0.959 3.041 25 H -0.272 1.272 26 H -0.278 1.278 27 H -0.279 1.279 28 C 0.123 3.877 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.383 0.617 48 H 0.273 0.727 49 H 0.070 0.930 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.856 -6.025 -1.676 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.105 4.105 3 H 0.133 0.867 4 C -0.152 4.152 5 C -0.191 4.191 6 C 0.362 3.638 7 O -0.382 6.382 8 O -0.265 6.265 9 C 0.069 3.931 10 C -0.233 4.233 11 C -0.195 4.195 12 C -0.239 4.239 13 C 0.349 3.651 14 O -0.462 6.462 15 N -0.323 5.323 16 C -0.013 4.013 17 C -0.166 4.166 18 C 0.200 3.800 19 O -0.403 6.403 20 C -0.603 4.603 21 H 0.074 0.926 22 C -0.161 4.161 23 N -0.547 5.547 24 Si 0.784 3.216 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.205 1.205 28 C 0.001 3.999 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.234 0.766 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.545 -5.151 -0.960 19.271 hybrid contribution 1.750 -0.356 0.529 1.862 sum -16.795 -5.507 -0.430 17.680 Atomic orbital electron populations 1.21455 0.89570 1.03222 1.03023 1.22711 0.97522 0.93793 0.96425 0.86668 1.23562 1.04003 1.01010 0.86664 1.20964 0.96237 1.03602 0.98249 1.21600 0.84034 0.81890 0.76287 1.90536 1.23306 1.80627 1.43773 1.86594 1.50335 1.18710 1.70852 1.22596 0.90105 0.88710 0.91642 1.22437 0.95440 1.04144 1.01234 1.21892 1.01755 0.91730 1.04118 1.22478 1.02618 1.03503 0.95333 1.19058 0.83375 0.81522 0.81127 1.90657 1.85264 1.31647 1.38642 1.48550 1.07719 1.25603 1.50459 1.22267 0.98606 0.84798 0.95625 1.22997 0.92264 0.99091 1.02287 1.19680 0.91249 0.86412 0.82672 1.86073 1.70897 1.50908 1.32417 1.21668 1.00296 1.39568 0.98725 0.92647 1.25553 1.01286 0.93805 0.95480 1.69603 1.35306 1.40663 1.09097 0.85603 0.79254 0.78213 0.78492 1.19670 1.20312 1.20460 1.22243 0.80598 0.99695 0.97395 0.91851 0.89470 0.91739 0.86829 0.84414 0.91073 0.88861 0.91625 0.92289 0.87838 0.90653 0.92094 0.88416 0.93170 0.90443 0.89734 0.90562 0.91883 0.76583 0.91707 0.91144 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.61 71.98 0.62 -1.77 16 2 C -0.09 -2.16 6.08 -10.79 -0.07 -2.23 16 3 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 4 C -0.12 -2.65 8.28 30.60 0.25 -2.40 16 5 C -0.19 -5.68 1.74 -53.67 -0.09 -5.77 16 6 C 0.52 15.28 6.24 71.24 0.44 15.72 16 7 O -0.49 -14.96 9.82 21.98 0.22 -14.75 16 8 O -0.35 -9.36 8.37 -51.32 -0.43 -9.79 16 9 C 0.10 2.19 1.13 -10.79 -0.01 2.18 16 10 C -0.18 -3.03 8.37 71.98 0.60 -2.43 16 11 C -0.14 -2.24 8.85 71.98 0.64 -1.60 16 12 C -0.18 -4.03 8.37 71.98 0.60 -3.43 16 13 C 0.56 22.31 6.96 87.66 0.61 22.92 16 14 O -0.58 -27.40 17.38 -3.04 -0.05 -27.46 16 15 N -0.59 -23.73 3.33 -811.80 -2.70 -26.43 16 16 C 0.11 3.81 6.32 86.73 0.55 4.36 16 17 C -0.13 -5.30 5.64 31.78 0.18 -5.12 16 18 C 0.24 11.48 0.89 -10.15 -0.01 11.47 16 19 O -0.59 -29.83 13.18 -148.98 -1.96 -31.80 16 20 C -0.56 -29.18 8.25 25.60 0.21 -28.96 16 21 H 0.06 2.89 7.77 -2.91 -0.02 2.86 16 22 C 0.04 2.00 5.29 84.65 0.45 2.45 16 23 N -0.91 -45.18 10.78 21.45 0.23 -44.95 16 24 Si 0.96 40.37 29.54 68.60 2.03 42.39 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.12 5.63 6.06 86.86 0.53 6.16 16 29 H 0.06 1.56 6.80 -2.39 -0.02 1.55 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.19 7.89 -2.39 -0.02 1.18 16 32 H 0.11 2.74 7.68 -2.39 -0.02 2.72 16 33 H 0.14 2.36 8.05 -2.39 -0.02 2.35 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.39 5.89 -2.39 -0.01 1.38 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 2.45 6.62 -2.39 -0.02 2.43 16 44 H 0.08 2.68 6.56 -2.39 -0.02 2.67 16 45 H 0.08 3.27 7.85 -2.39 -0.02 3.25 16 46 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 47 H 0.38 19.42 6.93 -74.06 -0.51 18.90 16 48 H 0.27 12.97 8.31 -92.70 -0.77 12.20 16 49 H 0.07 3.19 8.01 -2.39 -0.02 3.17 16 50 H 0.05 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -62.76 394.45 3.26 -59.50 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: 0.43 Total: 41.73 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.50 Total: 11.54 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -2.47 Total: -71.38 kcal Atomic # 8 Polarization: -81.56 SS G_CDS: -2.23 Total: -83.79 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Total: -62.76 3.26 -59.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869075947.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.833 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds