Wall clock time and date at job start Tue Mar 31 2020 22:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 O 1.45198 * 109.47092 * 240.00348 * 2 1 3 5 5 C 1.34230 * 117.00173 * 90.00111 * 4 2 1 6 6 O 1.20818 * 119.99983 * 0.27497 * 5 4 2 7 7 C 1.50706 * 119.99763 * 179.97438 * 5 4 2 8 8 H 1.08995 * 115.54837 * 34.28230 * 7 5 4 9 9 C 1.52993 * 117.49875 * 248.60610 * 7 5 4 10 10 C 1.52998 * 60.00221 * 252.51552 * 9 7 5 11 11 H 1.08999 * 117.50125 * 107.49073 * 10 9 7 12 12 C 1.53001 * 117.49932 * 252.51260 * 10 9 7 13 13 C 1.53176 * 109.54401 * 248.17826 * 12 10 9 14 14 C 1.53096 * 109.16372 * 183.15184 * 13 12 10 15 15 O 1.42903 * 109.41706 * 57.60542 * 14 13 12 16 16 C 1.42908 * 114.09470 * 298.84619 * 15 14 13 17 17 C 1.53093 * 109.41839 * 61.15625 * 16 15 14 18 18 C 1.50699 * 109.47262 * 119.99917 * 2 1 3 19 19 O 1.21282 * 119.99816 * 119.99625 * 18 2 1 20 20 N 1.34767 * 120.00284 * 300.00523 * 18 2 1 21 21 C 1.46505 * 119.99965 * 359.97438 * 20 18 2 22 22 C 1.46506 * 120.00325 * 179.97438 * 20 18 2 23 23 C 1.50709 * 109.46678 * 89.99486 * 22 20 18 24 24 H 1.07997 * 120.00219 * 0.02562 * 23 22 20 25 25 C 1.37876 * 119.99570 * 179.97438 * 23 22 20 26 26 N 1.31514 * 120.00164 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99812 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46846 * 90.00536 * 27 25 23 29 29 H 1.48505 * 109.46755 * 210.00510 * 27 25 23 30 30 H 1.48491 * 109.47024 * 330.00343 * 27 25 23 31 31 H 1.08999 * 109.47453 * 299.99844 * 1 2 3 32 32 H 1.09000 * 109.47267 * 59.99398 * 1 2 3 33 33 H 1.08997 * 109.47524 * 179.97438 * 1 2 3 34 34 H 1.09005 * 117.50007 * 359.97438 * 9 7 5 35 35 H 1.09006 * 117.50318 * 144.99828 * 9 7 5 36 36 H 1.09007 * 109.53906 * 8.44024 * 12 10 9 37 37 H 1.09002 * 109.51887 * 303.05312 * 13 12 10 38 38 H 1.09001 * 109.52403 * 63.24176 * 13 12 10 39 39 H 1.09001 * 109.47698 * 297.62561 * 14 13 12 40 40 H 1.08992 * 109.48146 * 177.58979 * 14 13 12 41 41 H 1.09003 * 109.48113 * 301.17300 * 16 15 14 42 42 H 1.08999 * 109.48857 * 181.14442 * 16 15 14 43 43 H 1.08998 * 109.52098 * 182.48306 * 17 16 15 44 44 H 1.08998 * 109.51984 * 62.29529 * 17 16 15 45 45 H 1.08991 * 109.47331 * 90.00488 * 21 20 18 46 46 H 1.09006 * 109.46802 * 210.00390 * 21 20 18 47 47 H 1.09001 * 109.46951 * 329.99893 * 21 20 18 48 48 H 1.08998 * 109.47207 * 209.99237 * 22 20 18 49 49 H 1.08997 * 109.46699 * 330.00308 * 22 20 18 50 50 H 0.97001 * 120.00583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 2.0025 1.2527 -2.2490 7 6 2.7193 -0.5769 -3.5492 8 1 2.3681 -1.5921 -3.7337 9 6 4.1371 -0.2261 -4.0046 10 6 2.9304 0.3297 -4.7634 11 1 2.7061 1.3898 -4.6450 12 6 2.6323 -0.2580 -6.1442 13 6 2.8929 0.8016 -7.2192 14 6 2.5173 0.2307 -8.5892 15 8 1.1480 -0.1779 -8.5743 16 6 0.8549 -1.2013 -7.6208 17 6 1.1637 -0.6878 -6.2120 18 6 2.0323 -0.7104 1.2305 19 8 2.7295 -1.6965 1.1191 20 7 1.7067 -0.2500 2.4545 21 6 0.8648 0.9414 2.5890 22 6 2.1946 -0.9410 3.6507 23 6 3.5224 -0.3579 4.0610 24 1 3.9589 0.4470 3.4884 25 6 4.1793 -0.8515 5.1682 26 7 3.6476 -1.8313 5.8659 27 14 5.8248 -0.1283 5.6773 28 1 5.6005 0.9967 6.6202 29 1 6.6415 -1.1758 6.3416 30 1 6.5403 0.3687 4.4748 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 4.7066 0.4687 -3.3872 35 1 4.7189 -1.0106 -4.4887 36 1 3.2736 -1.1219 -6.3189 37 1 2.2878 1.6848 -7.0143 38 1 3.9486 1.0732 -7.2147 39 1 3.1505 -0.6283 -8.8110 40 1 2.6603 0.9949 -9.3531 41 1 1.4664 -2.0790 -7.8300 42 1 -0.1997 -1.4688 -7.6871 43 1 0.9826 -1.4816 -5.4872 44 1 0.5237 0.1652 -5.9868 45 1 -0.1832 0.6438 2.6222 46 1 1.1227 1.4666 3.5087 47 1 1.0287 1.6002 1.7362 48 1 1.4766 -0.8154 4.4611 49 1 2.3154 -2.0022 3.4334 50 1 4.1099 -2.1788 6.6446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869795794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:04 Heat of formation + Delta-G solvation = -145.290407 kcal Electronic energy + Delta-G solvation = -29777.922718 eV Core-core repulsion = 25578.253011 eV Total energy + Delta-G solvation = -4199.669707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.92714 -39.92728 -39.03816 -37.57928 -36.15379 -34.96834 -33.37705 -32.91307 -31.54997 -31.50067 -27.72131 -26.58666 -26.19507 -25.16396 -24.14346 -23.81146 -22.34466 -21.58401 -20.58712 -20.10786 -18.88137 -18.06807 -16.86087 -16.63076 -16.51775 -16.36587 -16.04987 -15.85852 -15.45595 -15.14671 -14.98501 -14.60880 -14.35913 -14.21413 -13.82799 -13.61483 -13.53748 -13.02064 -12.80682 -12.66442 -12.42710 -12.28519 -12.19423 -12.11960 -11.77287 -11.68227 -11.54841 -11.40032 -11.30368 -11.16923 -11.00459 -10.93725 -10.71848 -10.62311 -10.58944 -10.47221 -10.33061 -10.19079 -9.87989 -9.67446 -8.92765 -8.47016 -7.75230 -6.07911 -4.12927 2.02057 2.39330 3.23791 3.28404 3.35103 3.39665 3.41188 3.50028 3.81675 4.12639 4.26128 4.36118 4.41992 4.50290 4.57825 4.67786 4.70940 4.81599 4.85103 4.89246 4.95446 5.00886 5.08556 5.10526 5.23890 5.26646 5.29026 5.34839 5.39712 5.46495 5.50593 5.60111 5.64546 5.65394 5.67206 5.71471 5.80593 5.82065 5.97559 6.00788 6.19797 6.43065 6.80303 6.96035 7.36681 7.44114 7.73091 7.88093 8.17792 8.26733 8.82366 8.97168 9.52117 11.00181 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.002065 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.057473 B =13554.855768 C =14185.135344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 H 0.105 0.895 4 O -0.320 6.320 5 C 0.492 3.508 6 O -0.512 6.512 7 C -0.161 4.161 8 H 0.136 0.864 9 C -0.141 4.141 10 C -0.112 4.112 11 H 0.121 0.879 12 C -0.059 4.059 13 C -0.148 4.148 14 C 0.060 3.940 15 O -0.385 6.385 16 C 0.060 3.940 17 C -0.152 4.152 18 C 0.508 3.492 19 O -0.519 6.519 20 N -0.596 5.596 21 C 0.076 3.924 22 C 0.247 3.753 23 C -0.529 4.529 24 H 0.057 0.943 25 C 0.061 3.939 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.280 1.280 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.036 0.964 49 H 0.046 0.954 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 4.601 -25.853 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.235 6.235 5 C 0.335 3.665 6 O -0.401 6.401 7 C -0.180 4.180 8 H 0.154 0.846 9 C -0.178 4.178 10 C -0.130 4.130 11 H 0.139 0.861 12 C -0.078 4.078 13 C -0.186 4.186 14 C -0.017 4.017 15 O -0.303 6.303 16 C -0.016 4.016 17 C -0.190 4.190 18 C 0.293 3.707 19 O -0.395 6.395 20 N -0.329 5.329 21 C -0.068 4.068 22 C 0.128 3.872 23 C -0.568 4.568 24 H 0.076 0.924 25 C -0.141 4.141 26 N -0.532 5.532 27 Si 0.727 3.273 28 H -0.206 1.206 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.800 4.367 -25.791 26.793 hybrid contribution 1.055 0.415 0.870 1.429 sum -4.745 4.782 -24.921 25.816 Atomic orbital electron populations 1.22397 0.92432 1.04092 1.04293 1.22625 0.95692 0.97630 0.82911 0.87713 1.86597 1.76242 1.41336 1.19344 1.22605 0.73862 0.85292 0.84739 1.90630 1.48628 1.16502 1.84312 1.21741 1.03302 1.01970 0.91032 0.84638 1.23199 0.89216 1.03341 1.02017 1.22547 1.01078 0.99349 0.89992 0.86091 1.20832 0.96782 0.98076 0.92088 1.22222 1.02597 0.99019 0.94774 1.22589 0.83023 0.99103 0.96944 1.87943 1.26765 1.56905 1.58712 1.22602 1.01468 0.89820 0.87740 1.22255 0.96451 1.02520 0.97783 1.19766 0.81720 0.85410 0.83828 1.90706 1.36911 1.25995 1.85866 1.48062 1.49860 1.28346 1.06667 1.21887 0.93966 0.88039 1.02923 1.19359 0.94382 0.93756 0.79704 1.21421 1.04854 1.19185 1.11299 0.92442 1.24938 0.98011 0.94927 0.96226 1.69928 1.39070 1.25946 1.18306 0.86477 0.83544 0.78695 0.78605 1.20588 1.21017 1.19905 0.88845 0.91397 0.90991 0.87749 0.87056 0.90473 0.90642 0.90452 0.93179 0.88809 0.93153 0.88767 0.90518 0.90599 0.92994 0.90291 0.92310 0.94570 0.93627 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.18 37.15 0.34 -1.97 16 2 C 0.07 1.19 2.18 -27.89 -0.06 1.13 16 3 H 0.11 1.73 6.41 -51.93 -0.33 1.40 16 4 O -0.32 -5.51 9.41 -45.90 -0.43 -5.95 16 5 C 0.49 7.23 7.71 36.01 0.28 7.51 16 6 O -0.51 -8.25 15.47 -18.74 -0.29 -8.54 16 7 C -0.16 -1.72 5.55 -91.77 -0.51 -2.23 16 8 H 0.14 1.24 7.65 -51.93 -0.40 0.84 16 9 C -0.14 -1.26 9.88 -26.74 -0.26 -1.52 16 10 C -0.11 -0.96 4.67 -90.62 -0.42 -1.38 16 11 H 0.12 1.20 7.64 -51.93 -0.40 0.80 16 12 C -0.06 -0.40 2.43 -90.44 -0.22 -0.62 16 13 C -0.15 -0.93 5.40 -26.59 -0.14 -1.07 16 14 C 0.06 0.38 6.84 37.21 0.25 0.63 16 15 O -0.38 -3.30 10.77 -35.23 -0.38 -3.68 16 16 C 0.06 0.41 6.84 37.21 0.25 0.66 16 17 C -0.15 -1.07 5.21 -26.59 -0.14 -1.21 16 18 C 0.51 11.04 7.15 -10.99 -0.08 10.96 16 19 O -0.52 -13.65 16.08 -14.10 -0.23 -13.87 16 20 N -0.60 -12.68 2.86 -182.95 -0.52 -13.20 16 21 C 0.08 1.18 8.80 59.85 0.53 1.70 16 22 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 23 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 24 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 27 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.09 1.08 4.53 -51.93 -0.24 0.85 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.08 0.46 7.90 -51.92 -0.41 0.05 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.51 7.42 -51.93 -0.39 0.12 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 46 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 47 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 48 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 49 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 50 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -35.26 404.28 -8.92 -44.18 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.25 Total: -1.49 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.63 Total: 5.29 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.21 Total: -38.91 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.33 Total: -32.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.26 -8.92 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869795794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.110 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds