Wall clock time and date at job start Tue Mar 31 2020 22:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47360 * 2 1 4 4 O 1.45198 * 109.47092 * 240.00348 * 2 1 3 5 5 C 1.34230 * 117.00173 * 90.00111 * 4 2 1 6 6 O 1.20818 * 119.99983 * 0.27497 * 5 4 2 7 7 C 1.50706 * 119.99763 * 179.97438 * 5 4 2 8 8 H 1.08995 * 115.54837 * 34.28230 * 7 5 4 9 9 C 1.52993 * 117.49875 * 248.60610 * 7 5 4 10 10 C 1.52998 * 60.00221 * 252.51552 * 9 7 5 11 11 H 1.08999 * 117.50125 * 107.49073 * 10 9 7 12 12 C 1.53001 * 117.49932 * 252.51260 * 10 9 7 13 13 C 1.53176 * 109.54401 * 248.17826 * 12 10 9 14 14 C 1.53096 * 109.16372 * 183.15184 * 13 12 10 15 15 O 1.42903 * 109.41706 * 57.60542 * 14 13 12 16 16 C 1.42908 * 114.09470 * 298.84619 * 15 14 13 17 17 C 1.53093 * 109.41839 * 61.15625 * 16 15 14 18 18 C 1.50699 * 109.47262 * 119.99917 * 2 1 3 19 19 O 1.21282 * 119.99816 * 119.99625 * 18 2 1 20 20 N 1.34767 * 120.00284 * 300.00523 * 18 2 1 21 21 C 1.46505 * 119.99965 * 359.97438 * 20 18 2 22 22 C 1.46506 * 120.00325 * 179.97438 * 20 18 2 23 23 C 1.50709 * 109.46678 * 89.99486 * 22 20 18 24 24 H 1.07997 * 120.00219 * 0.02562 * 23 22 20 25 25 C 1.37876 * 119.99570 * 179.97438 * 23 22 20 26 26 N 1.31514 * 120.00164 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99812 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46846 * 90.00536 * 27 25 23 29 29 H 1.48505 * 109.46755 * 210.00510 * 27 25 23 30 30 H 1.48491 * 109.47024 * 330.00343 * 27 25 23 31 31 H 1.08999 * 109.47453 * 299.99844 * 1 2 3 32 32 H 1.09000 * 109.47267 * 59.99398 * 1 2 3 33 33 H 1.08997 * 109.47524 * 179.97438 * 1 2 3 34 34 H 1.09005 * 117.50007 * 359.97438 * 9 7 5 35 35 H 1.09006 * 117.50318 * 144.99828 * 9 7 5 36 36 H 1.09007 * 109.53906 * 8.44024 * 12 10 9 37 37 H 1.09002 * 109.51887 * 303.05312 * 13 12 10 38 38 H 1.09001 * 109.52403 * 63.24176 * 13 12 10 39 39 H 1.09001 * 109.47698 * 297.62561 * 14 13 12 40 40 H 1.08992 * 109.48146 * 177.58979 * 14 13 12 41 41 H 1.09003 * 109.48113 * 301.17300 * 16 15 14 42 42 H 1.08999 * 109.48857 * 181.14442 * 16 15 14 43 43 H 1.08998 * 109.52098 * 182.48306 * 17 16 15 44 44 H 1.08998 * 109.51984 * 62.29529 * 17 16 15 45 45 H 1.08991 * 109.47331 * 90.00488 * 21 20 18 46 46 H 1.09006 * 109.46802 * 210.00390 * 21 20 18 47 47 H 1.09001 * 109.46951 * 329.99893 * 21 20 18 48 48 H 1.08998 * 109.47207 * 209.99237 * 22 20 18 49 49 H 1.08997 * 109.46699 * 330.00308 * 22 20 18 50 50 H 0.97001 * 120.00583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 2.0025 1.2527 -2.2490 7 6 2.7193 -0.5769 -3.5492 8 1 2.3681 -1.5921 -3.7337 9 6 4.1371 -0.2261 -4.0046 10 6 2.9304 0.3297 -4.7634 11 1 2.7061 1.3898 -4.6450 12 6 2.6323 -0.2580 -6.1442 13 6 2.8929 0.8016 -7.2192 14 6 2.5173 0.2307 -8.5892 15 8 1.1480 -0.1779 -8.5743 16 6 0.8549 -1.2013 -7.6208 17 6 1.1637 -0.6878 -6.2120 18 6 2.0323 -0.7104 1.2305 19 8 2.7295 -1.6965 1.1191 20 7 1.7067 -0.2500 2.4545 21 6 0.8648 0.9414 2.5890 22 6 2.1946 -0.9410 3.6507 23 6 3.5224 -0.3579 4.0610 24 1 3.9589 0.4470 3.4884 25 6 4.1793 -0.8515 5.1682 26 7 3.6476 -1.8313 5.8659 27 14 5.8248 -0.1283 5.6773 28 1 5.6005 0.9967 6.6202 29 1 6.6415 -1.1758 6.3416 30 1 6.5403 0.3687 4.4748 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 4.7066 0.4687 -3.3872 35 1 4.7189 -1.0106 -4.4887 36 1 3.2736 -1.1219 -6.3189 37 1 2.2878 1.6848 -7.0143 38 1 3.9486 1.0732 -7.2147 39 1 3.1505 -0.6283 -8.8110 40 1 2.6603 0.9949 -9.3531 41 1 1.4664 -2.0790 -7.8300 42 1 -0.1997 -1.4688 -7.6871 43 1 0.9826 -1.4816 -5.4872 44 1 0.5237 0.1652 -5.9868 45 1 -0.1832 0.6438 2.6222 46 1 1.1227 1.4666 3.5087 47 1 1.0287 1.6002 1.7362 48 1 1.4766 -0.8154 4.4611 49 1 2.3154 -2.0022 3.4334 50 1 4.1099 -2.1788 6.6446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869795794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:03 Heat of formation + Delta-G solvation = -166.291136 kcal Electronic energy + Delta-G solvation = -29778.833378 eV Core-core repulsion = 25578.253011 eV Total energy + Delta-G solvation = -4200.580367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.09898 -40.87493 -40.29393 -38.50186 -37.31807 -36.75868 -34.95224 -33.98801 -33.01485 -31.98805 -29.61483 -27.83243 -27.24560 -26.13334 -25.57600 -24.50549 -23.84824 -22.31619 -21.44169 -20.86406 -20.48000 -19.18173 -18.70582 -18.19045 -17.58753 -17.36847 -17.03322 -16.91488 -16.80950 -16.46056 -15.93949 -15.73817 -15.59399 -14.99501 -14.90875 -14.74914 -14.41570 -14.37943 -14.23532 -13.77061 -13.68324 -13.53040 -13.33696 -13.26540 -13.06279 -12.92995 -12.84550 -12.62044 -12.46072 -12.28312 -12.23822 -12.09995 -11.97774 -11.88056 -11.77242 -11.74421 -11.58757 -11.12582 -10.97989 -10.66840 -10.65632 -10.42276 -9.55456 -8.25925 -6.40592 0.91363 1.20948 1.34796 1.37737 1.47666 1.57748 2.27562 2.40442 2.63820 3.02461 3.03867 3.34610 3.39646 3.51620 3.58044 3.70710 3.80709 3.88409 3.96852 4.04018 4.14782 4.21076 4.28561 4.37132 4.42360 4.49357 4.57554 4.60980 4.63965 4.69440 4.79254 4.80265 4.84194 4.84635 4.90949 4.93029 4.96213 5.06145 5.13254 5.16675 5.18523 5.21432 5.28064 5.45519 5.48206 5.75169 6.00764 6.32038 6.48656 6.61604 6.67651 7.16756 7.32873 8.81355 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.002065 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.057473 B =13554.855768 C =14185.135344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.112 0.888 4 O -0.341 6.341 5 C 0.488 3.512 6 O -0.530 6.530 7 C -0.177 4.177 8 H 0.152 0.848 9 C -0.135 4.135 10 C -0.094 4.094 11 H 0.106 0.894 12 C -0.055 4.055 13 C -0.146 4.146 14 C 0.057 3.943 15 O -0.408 6.408 16 C 0.059 3.941 17 C -0.151 4.151 18 C 0.499 3.501 19 O -0.579 6.579 20 N -0.599 5.599 21 C 0.067 3.933 22 C 0.260 3.740 23 C -0.547 4.547 24 H 0.051 0.949 25 C 0.009 3.991 26 N -0.925 5.925 27 Si 0.968 3.032 28 H -0.262 1.262 29 H -0.279 1.279 30 H -0.276 1.276 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.035 0.965 49 H 0.001 0.999 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 5.710 -27.275 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.130 0.870 4 O -0.257 6.257 5 C 0.333 3.667 6 O -0.420 6.420 7 C -0.196 4.196 8 H 0.170 0.830 9 C -0.172 4.172 10 C -0.112 4.112 11 H 0.124 0.876 12 C -0.073 4.073 13 C -0.183 4.183 14 C -0.020 4.020 15 O -0.328 6.328 16 C -0.018 4.018 17 C -0.189 4.189 18 C 0.286 3.714 19 O -0.458 6.458 20 N -0.331 5.331 21 C -0.074 4.074 22 C 0.139 3.861 23 C -0.586 4.586 24 H 0.069 0.931 25 C -0.190 4.190 26 N -0.564 5.564 27 Si 0.792 3.208 28 H -0.186 1.186 29 H -0.204 1.204 30 H -0.201 1.201 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.646 5.524 -27.221 28.344 hybrid contribution 0.967 0.081 1.294 1.617 sum -4.679 5.606 -25.927 26.936 Atomic orbital electron populations 1.22400 0.89212 1.04568 1.06113 1.22520 0.97891 0.96558 0.80999 0.87049 1.86609 1.76773 1.42356 1.19937 1.23369 0.73147 0.85201 0.84961 1.90607 1.49542 1.17264 1.84591 1.21921 1.04876 1.03020 0.89791 0.83035 1.23354 0.88667 1.03678 1.01454 1.22523 1.00228 0.98281 0.90190 0.87551 1.20856 0.96914 0.98701 0.90877 1.22200 1.03158 0.98333 0.94645 1.22729 0.82276 0.99896 0.97071 1.87913 1.28113 1.57492 1.59242 1.22688 1.02144 0.89845 0.87106 1.22233 0.96330 1.02080 0.98248 1.20641 0.80694 0.84859 0.85183 1.90662 1.39582 1.28725 1.86877 1.48044 1.50118 1.29530 1.05403 1.22247 0.94780 0.86276 1.04109 1.18862 0.94000 0.91805 0.81427 1.21671 1.06007 1.19282 1.11597 0.93094 1.25843 1.01798 0.95221 0.96179 1.70036 1.40685 1.26952 1.18745 0.85414 0.78685 0.78414 0.78285 1.18648 1.20431 1.20082 0.86906 0.89575 0.91233 0.88923 0.84408 0.88811 0.91886 0.89161 0.91904 0.87952 0.91877 0.88316 0.90025 0.92173 0.89515 0.90573 0.89486 0.94746 0.98053 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 9.18 71.98 0.66 -3.39 16 2 C 0.08 2.62 2.18 29.85 0.07 2.69 16 3 H 0.11 3.56 6.41 -2.38 -0.02 3.54 16 4 O -0.34 -11.75 9.41 -45.06 -0.42 -12.18 16 5 C 0.49 14.13 7.71 71.24 0.55 14.68 16 6 O -0.53 -16.78 15.47 21.99 0.34 -16.44 16 7 C -0.18 -3.58 5.55 -11.54 -0.06 -3.64 16 8 H 0.15 2.53 7.65 -2.39 -0.02 2.51 16 9 C -0.13 -2.19 9.88 30.59 0.30 -1.89 16 10 C -0.09 -1.49 4.67 -10.79 -0.05 -1.54 16 11 H 0.11 2.04 7.64 -2.39 -0.02 2.02 16 12 C -0.06 -0.64 2.43 -10.68 -0.03 -0.66 16 13 C -0.15 -1.56 5.40 30.69 0.17 -1.39 16 14 C 0.06 0.60 6.84 72.01 0.49 1.09 16 15 O -0.41 -6.45 10.77 -148.98 -1.60 -8.05 16 16 C 0.06 0.70 6.84 72.01 0.49 1.19 16 17 C -0.15 -1.91 5.21 30.68 0.16 -1.75 16 18 C 0.50 22.11 7.15 87.66 0.63 22.73 16 19 O -0.58 -31.83 16.08 15.76 0.25 -31.58 16 20 N -0.60 -25.73 2.86 -851.11 -2.43 -28.16 16 21 C 0.07 1.98 8.80 127.77 1.12 3.10 16 22 C 0.26 14.02 5.16 85.63 0.44 14.47 16 23 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16 24 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 25 C 0.01 0.52 5.46 84.65 0.46 0.98 16 26 N -0.92 -55.67 13.29 21.45 0.28 -55.38 16 27 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 28 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 29 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 30 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 31 H 0.11 2.27 4.53 -2.39 -0.01 2.26 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.14 1.50 8.05 -2.38 -0.02 1.49 16 36 H 0.09 0.82 7.90 -2.38 -0.02 0.80 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 0.94 7.42 -2.39 -0.02 0.92 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.97 6.95 -2.39 -0.02 1.96 16 46 H 0.08 2.30 8.07 -2.38 -0.02 2.28 16 47 H 0.09 2.07 6.01 -2.39 -0.01 2.06 16 48 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 49 H 0.00 0.08 7.42 -2.39 -0.02 0.07 16 50 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.62 404.28 5.02 -74.60 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.93 Total: 14.92 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 5.64 Total: 15.17 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.15 Total: -83.54 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -1.43 Total: -68.24 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -79.62 5.02 -74.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869795794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.688 kcal (2) G-P(sol) polarization free energy of solvation -79.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds