Wall clock time and date at job start Tue Mar 31 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47198 * 2 1 4 4 C 1.46498 * 120.00275 * 90.00040 * 3 2 1 5 5 C 1.50695 * 109.46983 * 90.00143 * 4 3 2 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99661 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.34782 * 119.99816 * 270.00064 * 3 2 1 14 14 O 1.21286 * 119.99854 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00207 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47644 * 179.97438 * 15 13 3 17 17 C 1.34220 * 117.00411 * 179.97438 * 16 15 13 18 18 O 1.20829 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00130 * 180.02562 * 17 16 15 20 20 H 1.09003 * 115.55072 * 34.41103 * 19 17 16 21 21 C 1.53003 * 117.49887 * 248.74503 * 19 17 16 22 22 C 1.52995 * 117.50109 * 180.08733 * 19 17 16 23 23 H 1.09009 * 117.49646 * 359.97438 * 22 19 17 24 24 C 1.52995 * 117.50199 * 214.97909 * 22 19 17 25 25 C 1.53178 * 109.54665 * 179.82198 * 24 22 19 26 26 C 1.53109 * 109.15774 * 183.23957 * 25 24 22 27 27 O 1.42908 * 109.48634 * 57.47305 * 26 25 24 28 28 C 1.42910 * 114.09746 * 298.88868 * 27 26 25 29 29 C 1.53091 * 109.41356 * 61.15761 * 28 27 26 30 30 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47497 * 300.00183 * 1 2 3 32 32 H 1.09000 * 109.47563 * 60.00404 * 1 2 3 33 33 H 1.09000 * 109.47080 * 240.00077 * 2 1 3 34 34 H 1.09000 * 109.47563 * 119.99596 * 2 1 3 35 35 H 1.09002 * 109.46847 * 329.99842 * 4 3 2 36 36 H 1.09000 * 109.46849 * 210.00222 * 4 3 2 37 37 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 38 38 H 1.09005 * 109.47240 * 300.00246 * 15 13 3 39 39 H 1.09004 * 109.47231 * 59.99499 * 15 13 3 40 40 H 1.09006 * 117.49294 * 0.02562 * 21 19 17 41 41 H 1.08995 * 117.50073 * 145.01488 * 21 19 17 42 42 H 1.09004 * 109.54535 * 299.99713 * 24 22 19 43 43 H 1.09004 * 109.51865 * 303.05296 * 25 24 22 44 44 H 1.08994 * 109.52573 * 63.24668 * 25 24 22 45 45 H 1.08993 * 109.40614 * 297.49350 * 26 25 24 46 46 H 1.08997 * 109.48097 * 177.49968 * 26 25 24 47 47 H 1.08997 * 109.47708 * 301.17442 * 28 27 26 48 48 H 1.08996 * 109.48557 * 181.14419 * 28 27 26 49 49 H 1.08999 * 109.52096 * 182.48138 * 29 28 27 50 50 H 1.09004 * 109.57271 * 62.32807 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8351 1.7036 6 1 4.3426 1.2302 1.0961 7 6 4.1490 2.3897 2.8778 8 7 3.3490 3.1259 3.6180 9 14 5.9130 2.0957 3.4175 10 1 6.7851 3.1610 2.8607 11 1 6.3688 0.7727 2.9202 12 1 5.9876 2.1196 4.9004 13 6 2.2429 2.0165 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9922 1.3060 -2.4723 16 8 2.3060 2.1957 -3.5760 17 6 2.1359 1.7117 -4.8163 18 8 1.7383 0.5817 -4.9747 19 6 2.4418 2.5772 -6.0115 20 1 3.2752 3.2692 -5.8899 21 6 1.2627 3.0357 -6.8721 22 6 2.2255 1.9686 -7.3984 23 1 1.8624 0.9419 -7.4464 24 6 3.1953 2.3780 -8.5087 25 6 2.8165 1.6632 -9.8094 26 6 3.8393 2.0158 -10.8928 27 8 5.1478 1.6488 -10.4506 28 6 5.5734 2.3232 -9.2647 29 6 4.6216 1.9812 -8.1154 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5816 1.6878 2.0283 36 1 2.0954 3.1411 1.1383 37 1 2.4331 3.2789 3.3376 38 1 2.6228 0.4186 -2.5299 39 1 0.9444 1.0113 -2.5303 40 1 0.2657 2.7117 -6.5734 41 1 1.3205 4.0291 -7.3168 42 1 3.1449 3.4567 -8.6574 43 1 2.8174 0.5855 -9.6463 44 1 1.8239 1.9839 -10.1256 45 1 3.8081 3.0882 -11.0850 46 1 3.6001 1.4750 -11.8084 47 1 5.5648 3.3996 -9.4357 48 1 6.5833 2.0039 -9.0075 49 1 4.9187 2.5290 -7.2212 50 1 4.6598 0.9102 -7.9160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869797315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:59 Heat of formation + Delta-G solvation = -156.055283 kcal Electronic energy + Delta-G solvation = -29475.742540 eV Core-core repulsion = 25275.606033 eV Total energy + Delta-G solvation = -4200.136507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91408 -39.89292 -39.10701 -37.64139 -36.23739 -35.43862 -33.38644 -33.14949 -31.50279 -30.19999 -29.36894 -26.69046 -25.95573 -24.67392 -23.88443 -23.16811 -22.63518 -21.68788 -20.67839 -20.17929 -18.92146 -18.10778 -16.96094 -16.89728 -16.62356 -16.55516 -16.36449 -16.02172 -15.44088 -15.23647 -15.10036 -14.56408 -14.24066 -14.10782 -13.76030 -13.64410 -13.56189 -13.30793 -12.84555 -12.80916 -12.52182 -12.40615 -12.27735 -12.14556 -11.78476 -11.68997 -11.56698 -11.38375 -11.33668 -11.12337 -11.05392 -10.81448 -10.68596 -10.65560 -10.57806 -10.54775 -10.38153 -10.13851 -9.88849 -9.21850 -9.12403 -8.41683 -7.76093 -6.42432 -4.14749 1.93065 2.30314 3.13384 3.32790 3.42319 3.45761 3.49980 3.60330 3.70546 4.08684 4.20985 4.32175 4.47082 4.50711 4.55410 4.66204 4.71355 4.76342 4.82547 4.86926 4.93357 5.05645 5.09302 5.11394 5.21800 5.26212 5.29377 5.31596 5.33085 5.35967 5.46061 5.47064 5.55419 5.62258 5.64576 5.69075 5.78258 5.89234 5.98262 6.07293 6.28472 6.32967 6.72524 6.80601 7.04820 7.27385 7.63475 7.97930 8.12148 8.37880 8.71759 8.84559 9.54742 10.95117 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002109 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.483152 B =13272.697645 C =14390.150165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.588 5.588 4 C 0.238 3.762 5 C -0.608 4.608 6 H 0.052 0.948 7 C 0.020 3.980 8 N -0.909 5.909 9 Si 1.075 2.925 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.324 6.324 17 C 0.491 3.509 18 O -0.512 6.512 19 C -0.162 4.162 20 H 0.138 0.862 21 C -0.142 4.142 22 C -0.110 4.110 23 H 0.121 0.879 24 C -0.060 4.060 25 C -0.148 4.148 26 C 0.060 3.940 27 O -0.384 6.384 28 C 0.060 3.940 29 C -0.154 4.154 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.025 0.975 36 H 0.035 0.965 37 H 0.268 0.732 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -4.066 -26.621 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.322 5.322 4 C 0.119 3.881 5 C -0.647 4.647 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.544 5.544 9 Si 0.903 3.097 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.239 6.239 17 C 0.335 3.665 18 O -0.401 6.401 19 C -0.181 4.181 20 H 0.155 0.845 21 C -0.178 4.178 22 C -0.128 4.128 23 H 0.139 0.861 24 C -0.078 4.078 25 C -0.186 4.186 26 C -0.017 4.017 27 O -0.303 6.303 28 C -0.016 4.016 29 C -0.191 4.191 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.112 0.888 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.096 0.904 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.821 -3.578 -25.493 25.897 hybrid contribution -1.391 -0.425 -0.784 1.652 sum -4.212 -4.004 -26.277 26.912 Atomic orbital electron populations 1.22233 0.96451 1.01834 1.02341 1.21516 0.93757 0.83761 1.03175 1.48003 1.63968 1.13433 1.06761 1.19384 0.97134 0.93141 0.78466 1.22260 0.96858 1.35908 1.09639 0.92949 1.25830 1.05930 0.93424 0.93270 1.70780 1.07884 1.36197 1.39579 0.83461 0.74088 0.75995 0.76185 1.21305 1.21519 1.20884 1.19718 0.79644 0.87143 0.84300 1.90718 1.44418 1.17532 1.86735 1.22946 1.02708 0.92641 0.84354 1.86550 1.78398 1.44711 1.14202 1.22624 0.73823 0.86050 0.84032 1.90650 1.42937 1.19784 1.86725 1.21761 1.04447 1.03880 0.88019 0.84458 1.23203 0.94312 1.00043 1.00290 1.22561 0.99844 0.99684 0.90741 0.86066 1.20834 0.93681 1.00130 0.93153 1.22222 0.99661 1.01793 0.94912 1.22583 0.82577 0.99683 0.96827 1.87949 1.32288 1.66895 1.43159 1.22605 0.98195 0.96354 0.84469 1.22263 0.94500 1.03293 0.99059 0.91709 0.91914 0.93097 0.91585 0.89397 0.95684 0.94719 0.92196 0.88592 0.88746 0.87855 0.87053 0.90466 0.90657 0.90480 0.93205 0.88814 0.93119 0.88680 0.90430 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 2 C 0.10 1.62 5.93 -4.05 -0.02 1.60 16 3 N -0.59 -12.44 2.46 -175.07 -0.43 -12.87 16 4 C 0.24 6.13 4.47 -5.20 -0.02 6.11 16 5 C -0.61 -17.33 9.39 -34.44 -0.32 -17.65 16 6 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 8 N -0.91 -27.57 13.65 55.43 0.76 -26.81 16 9 Si 1.07 25.61 29.90 -169.99 -5.08 20.53 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.87 7.75 -10.98 -0.09 10.78 16 14 O -0.52 -13.49 16.08 -14.11 -0.23 -13.72 16 15 C 0.05 0.84 4.50 36.00 0.16 1.00 16 16 O -0.32 -5.48 9.75 -45.88 -0.45 -5.93 16 17 C 0.49 6.94 7.74 36.01 0.28 7.22 16 18 O -0.51 -7.93 16.01 -18.75 -0.30 -8.23 16 19 C -0.16 -1.65 5.55 -91.77 -0.51 -2.16 16 20 H 0.14 1.27 7.66 -51.93 -0.40 0.87 16 21 C -0.14 -1.10 9.88 -26.69 -0.26 -1.36 16 22 C -0.11 -0.90 4.67 -90.59 -0.42 -1.32 16 23 H 0.12 1.14 7.64 -51.92 -0.40 0.74 16 24 C -0.06 -0.40 2.42 -90.44 -0.22 -0.62 16 25 C -0.15 -0.89 5.41 -26.58 -0.14 -1.04 16 26 C 0.06 0.38 6.84 37.21 0.25 0.63 16 27 O -0.38 -3.39 10.77 -35.23 -0.38 -3.77 16 28 C 0.06 0.43 6.84 37.20 0.25 0.69 16 29 C -0.15 -1.14 5.22 -26.59 -0.14 -1.28 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 33 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 34 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 35 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.03 1.00 7.29 -51.93 -0.38 0.62 16 37 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 38 H 0.10 1.44 7.39 -51.93 -0.38 1.06 16 39 H 0.09 1.35 7.18 -51.93 -0.37 0.98 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.11 0.65 8.05 -51.93 -0.42 0.23 16 42 H 0.08 0.45 7.90 -51.93 -0.41 0.04 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.56 7.43 -51.93 -0.39 0.18 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -35.75 408.93 -9.28 -45.03 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.41 Total: -1.59 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.92 Total: 1.20 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.33 Total: -39.68 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.35 Total: -31.65 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.75 -9.28 -45.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869797315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.028 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds