Wall clock time and date at job start Tue Mar 31 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47198 * 2 1 4 4 C 1.46498 * 120.00275 * 90.00040 * 3 2 1 5 5 C 1.50695 * 109.46983 * 90.00143 * 4 3 2 6 6 H 1.07999 * 120.00538 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99661 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.34782 * 119.99816 * 270.00064 * 3 2 1 14 14 O 1.21286 * 119.99854 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00207 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47644 * 179.97438 * 15 13 3 17 17 C 1.34220 * 117.00411 * 179.97438 * 16 15 13 18 18 O 1.20829 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00130 * 180.02562 * 17 16 15 20 20 H 1.09003 * 115.55072 * 34.41103 * 19 17 16 21 21 C 1.53003 * 117.49887 * 248.74503 * 19 17 16 22 22 C 1.52995 * 117.50109 * 180.08733 * 19 17 16 23 23 H 1.09009 * 117.49646 * 359.97438 * 22 19 17 24 24 C 1.52995 * 117.50199 * 214.97909 * 22 19 17 25 25 C 1.53178 * 109.54665 * 179.82198 * 24 22 19 26 26 C 1.53109 * 109.15774 * 183.23957 * 25 24 22 27 27 O 1.42908 * 109.48634 * 57.47305 * 26 25 24 28 28 C 1.42910 * 114.09746 * 298.88868 * 27 26 25 29 29 C 1.53091 * 109.41356 * 61.15761 * 28 27 26 30 30 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47497 * 300.00183 * 1 2 3 32 32 H 1.09000 * 109.47563 * 60.00404 * 1 2 3 33 33 H 1.09000 * 109.47080 * 240.00077 * 2 1 3 34 34 H 1.09000 * 109.47563 * 119.99596 * 2 1 3 35 35 H 1.09002 * 109.46847 * 329.99842 * 4 3 2 36 36 H 1.09000 * 109.46849 * 210.00222 * 4 3 2 37 37 H 0.97001 * 119.99697 * 359.97438 * 8 7 5 38 38 H 1.09005 * 109.47240 * 300.00246 * 15 13 3 39 39 H 1.09004 * 109.47231 * 59.99499 * 15 13 3 40 40 H 1.09006 * 117.49294 * 0.02562 * 21 19 17 41 41 H 1.08995 * 117.50073 * 145.01488 * 21 19 17 42 42 H 1.09004 * 109.54535 * 299.99713 * 24 22 19 43 43 H 1.09004 * 109.51865 * 303.05296 * 25 24 22 44 44 H 1.08994 * 109.52573 * 63.24668 * 25 24 22 45 45 H 1.08993 * 109.40614 * 297.49350 * 26 25 24 46 46 H 1.08997 * 109.48097 * 177.49968 * 26 25 24 47 47 H 1.08997 * 109.47708 * 301.17442 * 28 27 26 48 48 H 1.08996 * 109.48557 * 181.14419 * 28 27 26 49 49 H 1.08999 * 109.52096 * 182.48138 * 29 28 27 50 50 H 1.09004 * 109.57271 * 62.32807 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8351 1.7036 6 1 4.3426 1.2302 1.0961 7 6 4.1490 2.3897 2.8778 8 7 3.3490 3.1259 3.6180 9 14 5.9130 2.0957 3.4175 10 1 6.7851 3.1610 2.8607 11 1 6.3688 0.7727 2.9202 12 1 5.9876 2.1196 4.9004 13 6 2.2429 2.0165 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9922 1.3060 -2.4723 16 8 2.3060 2.1957 -3.5760 17 6 2.1359 1.7117 -4.8163 18 8 1.7383 0.5817 -4.9747 19 6 2.4418 2.5772 -6.0115 20 1 3.2752 3.2692 -5.8899 21 6 1.2627 3.0357 -6.8721 22 6 2.2255 1.9686 -7.3984 23 1 1.8624 0.9419 -7.4464 24 6 3.1953 2.3780 -8.5087 25 6 2.8165 1.6632 -9.8094 26 6 3.8393 2.0158 -10.8928 27 8 5.1478 1.6488 -10.4506 28 6 5.5734 2.3232 -9.2647 29 6 4.6216 1.9812 -8.1154 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5816 1.6878 2.0283 36 1 2.0954 3.1411 1.1383 37 1 2.4331 3.2789 3.3376 38 1 2.6228 0.4186 -2.5299 39 1 0.9444 1.0113 -2.5303 40 1 0.2657 2.7117 -6.5734 41 1 1.3205 4.0291 -7.3168 42 1 3.1449 3.4567 -8.6574 43 1 2.8174 0.5855 -9.6463 44 1 1.8239 1.9839 -10.1256 45 1 3.8081 3.0882 -11.0850 46 1 3.6001 1.4750 -11.8084 47 1 5.5648 3.3996 -9.4357 48 1 6.5833 2.0039 -9.0075 49 1 4.9187 2.5290 -7.2212 50 1 4.6598 0.9102 -7.9160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869797315.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:58 Heat of formation + Delta-G solvation = -176.952279 kcal Electronic energy + Delta-G solvation = -29476.648702 eV Core-core repulsion = 25275.606033 eV Total energy + Delta-G solvation = -4201.042669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01540 -40.90131 -40.35293 -38.50631 -37.42156 -37.08923 -35.26014 -33.98217 -32.00597 -31.73399 -30.83144 -28.30323 -26.89831 -25.62574 -24.92631 -24.45877 -24.15243 -22.35196 -21.49501 -20.88815 -20.55358 -19.24270 -18.90448 -18.24570 -17.87852 -17.64544 -17.14153 -16.94527 -16.84215 -16.22579 -15.76984 -15.65566 -15.62380 -15.32749 -14.96946 -14.76234 -14.55405 -14.50763 -14.19625 -14.06060 -13.76198 -13.55410 -13.44362 -13.28049 -13.20816 -12.92707 -12.66974 -12.51270 -12.29424 -12.21245 -12.11387 -11.95344 -11.92361 -11.88944 -11.79008 -11.62760 -11.25969 -11.14109 -11.00734 -10.86386 -10.64419 -10.43776 -9.62853 -8.72717 -6.48236 0.88550 1.12429 1.45765 1.50281 1.57708 1.75751 2.22009 2.51735 2.62577 3.00715 3.06891 3.29089 3.39292 3.50980 3.57303 3.76254 3.85329 3.88942 3.97859 4.02277 4.04308 4.13268 4.20859 4.25256 4.35350 4.41663 4.46120 4.59634 4.65484 4.68152 4.78483 4.78875 4.79957 4.82832 4.85151 4.89495 4.91201 4.94881 5.12210 5.16259 5.17856 5.20833 5.24052 5.44162 5.45648 5.77219 6.09032 6.30435 6.39982 6.43522 6.54901 7.09948 7.31542 8.63080 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002109 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.483152 B =13272.697645 C =14390.150165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.591 5.591 4 C 0.249 3.751 5 C -0.618 4.618 6 H 0.046 0.954 7 C -0.031 4.031 8 N -0.930 5.930 9 Si 1.121 2.879 10 H -0.281 1.281 11 H -0.267 1.267 12 H -0.275 1.275 13 C 0.500 3.500 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.347 6.347 17 C 0.490 3.510 18 O -0.529 6.529 19 C -0.182 4.182 20 H 0.146 0.854 21 C -0.124 4.124 22 C -0.098 4.098 23 H 0.108 0.892 24 C -0.056 4.056 25 C -0.144 4.144 26 C 0.055 3.945 27 O -0.409 6.409 28 C 0.059 3.941 29 C -0.153 4.153 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.026 0.974 36 H -0.005 1.005 37 H 0.256 0.744 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 -5.001 -28.651 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.657 4.657 6 H 0.064 0.936 7 C -0.230 4.230 8 N -0.566 5.566 9 Si 0.942 3.058 10 H -0.207 1.207 11 H -0.192 1.192 12 H -0.200 1.200 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.014 4.014 16 O -0.263 6.263 17 C 0.336 3.664 18 O -0.418 6.418 19 C -0.201 4.201 20 H 0.164 0.836 21 C -0.161 4.161 22 C -0.116 4.116 23 H 0.126 0.874 24 C -0.074 4.074 25 C -0.182 4.182 26 C -0.021 4.021 27 O -0.328 6.328 28 C -0.017 4.017 29 C -0.191 4.191 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.065 0.935 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.156 0.844 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.082 0.918 48 H 0.114 0.886 49 H 0.096 0.904 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.013 -4.568 -27.552 28.090 hybrid contribution -1.402 -0.164 -0.207 1.427 sum -4.415 -4.732 -27.759 28.504 Atomic orbital electron populations 1.22175 0.94034 1.03975 1.01875 1.21879 0.95734 0.80790 1.04403 1.48044 1.63723 1.15271 1.05328 1.18920 0.96073 0.91476 0.80766 1.22541 0.97978 1.35544 1.09622 0.93581 1.27364 1.09449 0.92573 0.93580 1.70900 1.07721 1.37696 1.40317 0.82891 0.69492 0.77065 0.76384 1.20666 1.19193 1.19988 1.20571 0.78239 0.86648 0.85850 1.90679 1.47063 1.20184 1.87747 1.22788 1.04666 0.91976 0.81926 1.86564 1.79002 1.45459 1.15231 1.23341 0.72994 0.86361 0.83750 1.90631 1.43926 1.20583 1.86702 1.21916 1.06370 1.04679 0.87166 0.83639 1.23388 0.93344 1.01164 0.98217 1.22547 1.00071 0.99299 0.89695 0.87388 1.20855 0.92564 1.01180 0.92780 1.22196 1.00544 1.00940 0.94523 1.22754 0.81533 1.00694 0.97133 1.87917 1.33626 1.67605 1.43655 1.22665 0.98140 0.97007 0.83936 1.22242 0.95396 1.02148 0.99317 0.88184 0.93646 0.92337 0.88404 0.90114 0.95641 0.98680 0.93455 0.86671 0.86008 0.87984 0.84393 0.88729 0.91958 0.88763 0.91866 0.87873 0.91791 0.88617 0.90408 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.59 -25.26 2.46 -826.18 -2.03 -27.29 16 4 C 0.25 13.32 4.47 85.63 0.38 13.70 16 5 C -0.62 -36.00 9.39 25.60 0.24 -35.76 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C -0.03 -1.83 5.46 84.65 0.46 -1.37 16 8 N -0.93 -57.74 13.65 21.45 0.29 -57.44 16 9 Si 1.12 51.37 29.90 68.60 2.05 53.42 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 C 0.50 21.67 7.75 87.65 0.68 22.35 16 14 O -0.58 -31.24 16.08 15.75 0.25 -30.98 16 15 C 0.06 2.01 4.50 71.23 0.32 2.34 16 16 O -0.35 -11.57 9.75 -44.97 -0.44 -12.01 16 17 C 0.49 13.38 7.74 71.24 0.55 13.93 16 18 O -0.53 -15.70 16.01 21.95 0.35 -15.34 16 19 C -0.18 -3.46 5.55 -11.54 -0.06 -3.52 16 20 H 0.15 2.50 7.66 -2.39 -0.02 2.48 16 21 C -0.12 -1.61 9.88 30.62 0.30 -1.31 16 22 C -0.10 -1.42 4.67 -10.77 -0.05 -1.47 16 23 H 0.11 1.90 7.64 -2.38 -0.02 1.88 16 24 C -0.06 -0.62 2.42 -10.68 -0.03 -0.65 16 25 C -0.14 -1.45 5.41 30.69 0.17 -1.29 16 26 C 0.06 0.58 6.84 72.02 0.49 1.07 16 27 O -0.41 -6.73 10.77 -148.98 -1.60 -8.33 16 28 C 0.06 0.78 6.84 72.01 0.49 1.27 16 29 C -0.15 -2.13 5.22 30.68 0.16 -1.97 16 30 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 33 H 0.10 2.37 6.44 -2.39 -0.02 2.35 16 34 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 35 H 0.03 1.35 7.94 -2.39 -0.02 1.33 16 36 H 0.00 -0.30 7.29 -2.39 -0.02 -0.31 16 37 H 0.26 16.05 7.22 -92.71 -0.67 15.38 16 38 H 0.12 3.23 7.39 -2.38 -0.02 3.21 16 39 H 0.12 3.21 7.18 -2.38 -0.02 3.19 16 40 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.14 1.08 8.05 -2.39 -0.02 1.06 16 42 H 0.09 0.78 7.90 -2.39 -0.02 0.76 16 43 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.06 7.43 -2.39 -0.02 1.04 16 50 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -80.78 408.93 5.26 -75.53 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.02 Total: 14.98 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.36 Total: 7.48 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.74 Total: -84.74 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -1.44 Total: -66.67 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Total: -80.78 5.26 -75.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869797315.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.423 kcal (2) G-P(sol) polarization free energy of solvation -80.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds