Wall clock time and date at job start Tue Mar 31 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.47134 * 2 1 4 4 C 1.42905 * 113.99929 * 180.02562 * 3 2 1 5 5 C 1.53893 * 113.58735 * 210.00132 * 4 3 2 6 6 C 1.53258 * 86.88019 * 220.42646 * 5 4 3 7 7 C 1.52588 * 128.60782 * 245.03583 * 6 5 4 8 8 C 1.52455 * 128.58647 * 165.11201 * 6 5 4 9 9 H 1.08998 * 117.51625 * 225.09068 * 8 6 5 10 10 C 1.50702 * 117.51117 * 10.15203 * 8 6 5 11 11 O 1.20829 * 120.00274 * 359.83982 * 10 8 6 12 12 O 1.34232 * 120.00121 * 179.84921 * 10 8 6 13 13 C 1.45199 * 117.00260 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47241 * 29.99758 * 13 12 10 15 15 C 1.52997 * 109.47012 * 270.00043 * 13 12 10 16 16 C 1.50698 * 109.47072 * 149.99681 * 13 12 10 17 17 O 1.21279 * 120.00322 * 5.00296 * 16 13 12 18 18 N 1.34777 * 119.99969 * 184.99963 * 16 13 12 19 19 C 1.46507 * 119.99744 * 359.97438 * 18 16 13 20 20 C 1.46497 * 120.00178 * 180.02562 * 18 16 13 21 21 C 1.50694 * 109.47115 * 270.00180 * 20 18 16 22 22 H 1.08000 * 120.00563 * 359.97438 * 21 20 18 23 23 C 1.37885 * 119.99902 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99913 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46985 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47276 * 299.99832 * 25 23 21 28 28 H 1.48498 * 109.47150 * 60.00043 * 25 23 21 29 29 C 1.53259 * 87.69393 * 25.07885 * 6 5 4 30 30 H 1.09000 * 109.46744 * 59.99958 * 1 2 3 31 31 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46715 * 300.00106 * 1 2 3 33 33 H 1.09003 * 109.46857 * 239.99360 * 2 1 3 34 34 H 1.09000 * 109.46744 * 120.00041 * 2 1 3 35 35 H 1.08999 * 112.88058 * 341.16659 * 4 3 2 36 36 H 1.08996 * 113.64452 * 105.92980 * 5 4 3 37 37 H 1.09001 * 113.72507 * 334.93343 * 5 4 3 38 38 H 1.09003 * 117.50327 * 134.98076 * 7 6 5 39 39 H 1.08995 * 117.54251 * 349.84251 * 7 6 5 40 40 H 1.08995 * 109.47349 * 59.99836 * 15 13 12 41 41 H 1.09000 * 109.47142 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.47203 * 299.99611 * 15 13 12 43 43 H 1.09000 * 109.47436 * 269.99730 * 19 18 16 44 44 H 1.09000 * 109.47148 * 30.00599 * 19 18 16 45 45 H 1.09004 * 109.46943 * 149.99854 * 19 18 16 46 46 H 1.09007 * 109.47078 * 149.99819 * 20 18 16 47 47 H 1.09003 * 109.46733 * 30.00541 * 20 18 16 48 48 H 0.97001 * 119.99646 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.64364 * 89.41510 * 29 6 5 50 50 H 1.08995 * 113.64645 * 220.41744 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.9487 2.7261 0.7046 6 6 4.9772 2.8342 -0.4265 7 6 6.4964 2.7162 -0.3466 8 6 5.8493 4.0250 -0.8081 9 1 5.9223 4.2772 -1.8660 10 6 5.8870 5.1934 0.1429 11 8 5.2386 5.1640 1.1621 12 8 6.6408 6.2668 -0.1422 13 6 6.6285 7.3551 0.8189 14 1 6.4577 6.9552 1.8185 15 6 5.5094 8.3362 0.4641 16 6 7.9541 8.0710 0.7841 17 8 8.7902 7.7596 -0.0374 18 7 8.2106 9.0575 1.6660 19 6 7.2004 9.4340 2.6580 20 6 9.4990 9.7538 1.6318 21 6 10.4791 9.0412 2.5277 22 1 10.1728 8.1582 3.0688 23 6 11.7666 9.5172 2.6574 24 7 12.1395 10.5929 1.9989 25 14 12.9812 8.6343 3.7685 26 1 14.2874 9.3401 3.7338 27 1 12.4614 8.6222 5.1594 28 1 13.1608 7.2383 3.2950 29 6 4.0020 2.0430 -1.3052 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9286 0.5459 0.3233 36 1 4.3919 2.5322 1.6813 37 1 3.2290 3.5445 0.7207 38 1 6.9944 2.1072 -1.1011 39 1 6.9492 2.7006 0.6448 40 1 4.5507 7.8184 0.4892 41 1 5.4999 9.1530 1.1858 42 1 5.6803 8.7361 -0.5354 43 1 6.5614 10.2157 2.2473 44 1 6.5944 8.5632 2.9081 45 1 7.6940 9.8034 3.5570 46 1 9.3675 10.7786 1.9795 47 1 9.8802 9.7628 0.6107 48 1 13.0452 10.9279 2.0905 49 1 3.2962 2.6705 -1.8494 50 1 4.4879 1.3017 -1.9395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869932483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:20 Heat of formation + Delta-G solvation = -110.058168 kcal Electronic energy + Delta-G solvation = -29551.086827 eV Core-core repulsion = 25352.944905 eV Total energy + Delta-G solvation = -4198.141923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00918 -39.91217 -38.84795 -37.51216 -36.17572 -34.91298 -33.68675 -32.86412 -31.54062 -30.97999 -27.72062 -26.22978 -26.11122 -25.47381 -24.02642 -23.30775 -22.90687 -22.24875 -20.51894 -18.96004 -18.59564 -17.90405 -17.29984 -16.59423 -16.53929 -16.11236 -16.03490 -15.78473 -15.61823 -15.16977 -14.59275 -14.39226 -14.37395 -13.92253 -13.53214 -13.49403 -13.20538 -12.98056 -12.77560 -12.57548 -12.40460 -12.30782 -12.23681 -12.12489 -12.03067 -11.69837 -11.66744 -11.44223 -11.40181 -11.19861 -10.94796 -10.92893 -10.68394 -10.66161 -10.56787 -10.38692 -10.17807 -10.08535 -9.72796 -9.67488 -8.89772 -8.45094 -7.73030 -6.06334 -4.11336 2.06787 2.42065 3.22855 3.26820 3.31471 3.35610 3.39801 3.51847 3.81451 4.11800 4.24526 4.34141 4.42886 4.47049 4.48448 4.66556 4.71092 4.76820 4.88889 4.91971 4.98238 5.03874 5.10609 5.23966 5.27743 5.28186 5.39165 5.42507 5.51360 5.52004 5.53200 5.63752 5.67667 5.70279 5.70616 5.76728 5.85837 5.90848 5.92286 6.01033 6.22011 6.47551 6.95193 6.98252 7.38564 7.46155 7.78856 7.89721 8.19655 8.29174 8.84318 8.99213 9.53565 11.01716 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002032 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.711355 B =13776.522187 C =14290.018527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.064 3.936 5 C -0.080 4.080 6 C -0.130 4.130 7 C -0.115 4.115 8 C -0.144 4.144 9 H 0.138 0.862 10 C 0.491 3.509 11 O -0.506 6.506 12 O -0.321 6.321 13 C 0.070 3.930 14 H 0.105 0.895 15 C -0.169 4.169 16 C 0.508 3.492 17 O -0.519 6.519 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.530 4.530 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.286 1.286 27 H -0.277 1.277 28 H -0.276 1.276 29 C -0.111 4.111 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.264 0.736 49 H 0.097 0.903 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.639 -17.931 -4.525 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.006 3.994 5 C -0.117 4.117 6 C -0.130 4.130 7 C -0.151 4.151 8 C -0.163 4.163 9 H 0.156 0.844 10 C 0.334 3.666 11 O -0.394 6.394 12 O -0.236 6.236 13 C 0.012 3.988 14 H 0.123 0.877 15 C -0.227 4.227 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.569 4.569 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.211 1.211 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.148 4.148 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.319 -17.762 -4.677 28.140 hybrid contribution 0.934 -0.457 0.753 1.284 sum -20.386 -18.219 -3.923 27.621 Atomic orbital electron populations 1.21754 0.93828 1.02184 1.03198 1.22512 0.95609 0.84069 0.99959 1.87969 1.20577 1.26169 1.94566 1.23590 0.80903 0.98231 0.96696 1.22650 0.95536 0.96957 0.96533 1.22015 0.92055 0.98147 1.00824 1.22957 0.92869 0.95501 1.03807 1.21599 1.08418 0.86539 0.99761 0.84433 1.22585 0.76049 0.82813 0.85155 1.90632 1.41488 1.80659 1.26655 1.86606 1.62699 1.25795 1.48543 1.22626 0.96176 0.86411 0.93609 0.87743 1.22271 0.97017 0.99374 1.04013 1.19775 0.87207 0.81239 0.82523 1.90705 1.47380 1.63878 1.37517 1.48070 1.18222 1.35394 1.31265 1.21844 0.91870 0.99598 0.93445 1.19346 0.77312 0.91496 0.99012 1.21389 0.96144 1.12239 1.27089 0.92489 1.24933 0.98020 0.95062 0.96017 1.69921 1.19076 1.22488 1.41761 0.86542 0.80129 0.79898 0.80764 1.21118 1.20225 1.20163 1.23069 0.96538 0.98512 0.96679 0.91850 0.91199 0.91810 0.93434 0.93389 0.89281 0.90466 0.88268 0.86721 0.87473 0.91313 0.89315 0.90986 0.93121 0.92364 0.90299 0.94602 0.93642 0.92606 0.88473 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.06 0.37 6.50 37.16 0.24 0.61 16 3 O -0.37 -3.54 10.35 -35.23 -0.36 -3.90 16 4 C 0.06 0.53 4.31 -25.81 -0.11 0.42 16 5 C -0.08 -0.81 6.31 -26.13 -0.16 -0.98 16 6 C -0.13 -1.24 2.88 -154.73 -0.45 -1.68 16 7 C -0.11 -1.06 10.24 -26.88 -0.28 -1.34 16 8 C -0.14 -1.62 6.30 -91.99 -0.58 -2.20 16 9 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 10 C 0.49 7.32 7.71 36.01 0.28 7.60 16 11 O -0.51 -8.07 14.36 -18.75 -0.27 -8.33 16 12 O -0.32 -5.60 9.42 -45.89 -0.43 -6.03 16 13 C 0.07 1.20 2.16 -27.89 -0.06 1.14 16 14 H 0.10 1.72 6.15 -51.93 -0.32 1.40 16 15 C -0.17 -2.28 9.27 37.16 0.34 -1.94 16 16 C 0.51 11.10 7.10 -10.99 -0.08 11.02 16 17 O -0.52 -13.72 16.09 -14.05 -0.23 -13.95 16 18 N -0.60 -12.78 2.86 -182.95 -0.52 -13.30 16 19 C 0.08 1.20 8.92 59.85 0.53 1.74 16 20 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 21 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 22 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 25 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C -0.11 -0.87 7.93 -26.14 -0.21 -1.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.61 7.87 -51.93 -0.41 0.20 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.16 8.05 -51.93 -0.42 0.75 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.05 5.12 -51.93 -0.27 0.79 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 44 H 0.06 0.78 6.07 -51.93 -0.32 0.47 16 45 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 46 H 0.04 0.94 8.07 -51.92 -0.42 0.52 16 47 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 412.95 15.07 6.22 6.22 Total: -1.00 -35.05 412.95 -8.82 -43.88 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.36 Total: -1.25 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.59 Total: 5.52 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.21 Total: -39.08 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.29 Total: -32.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.05 -8.82 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869932483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.182 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds