Wall clock time and date at job start Tue Mar 31 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.47134 * 2 1 4 4 C 1.42905 * 113.99929 * 180.02562 * 3 2 1 5 5 C 1.53893 * 113.58735 * 210.00132 * 4 3 2 6 6 C 1.53258 * 86.88019 * 220.42646 * 5 4 3 7 7 C 1.52588 * 128.60782 * 245.03583 * 6 5 4 8 8 C 1.52455 * 128.58647 * 165.11201 * 6 5 4 9 9 H 1.08998 * 117.51625 * 225.09068 * 8 6 5 10 10 C 1.50702 * 117.51117 * 10.15203 * 8 6 5 11 11 O 1.20829 * 120.00274 * 359.83982 * 10 8 6 12 12 O 1.34232 * 120.00121 * 179.84921 * 10 8 6 13 13 C 1.45199 * 117.00260 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47241 * 29.99758 * 13 12 10 15 15 C 1.52997 * 109.47012 * 270.00043 * 13 12 10 16 16 C 1.50698 * 109.47072 * 149.99681 * 13 12 10 17 17 O 1.21279 * 120.00322 * 5.00296 * 16 13 12 18 18 N 1.34777 * 119.99969 * 184.99963 * 16 13 12 19 19 C 1.46507 * 119.99744 * 359.97438 * 18 16 13 20 20 C 1.46497 * 120.00178 * 180.02562 * 18 16 13 21 21 C 1.50694 * 109.47115 * 270.00180 * 20 18 16 22 22 H 1.08000 * 120.00563 * 359.97438 * 21 20 18 23 23 C 1.37885 * 119.99902 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99913 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46985 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47276 * 299.99832 * 25 23 21 28 28 H 1.48498 * 109.47150 * 60.00043 * 25 23 21 29 29 C 1.53259 * 87.69393 * 25.07885 * 6 5 4 30 30 H 1.09000 * 109.46744 * 59.99958 * 1 2 3 31 31 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46715 * 300.00106 * 1 2 3 33 33 H 1.09003 * 109.46857 * 239.99360 * 2 1 3 34 34 H 1.09000 * 109.46744 * 120.00041 * 2 1 3 35 35 H 1.08999 * 112.88058 * 341.16659 * 4 3 2 36 36 H 1.08996 * 113.64452 * 105.92980 * 5 4 3 37 37 H 1.09001 * 113.72507 * 334.93343 * 5 4 3 38 38 H 1.09003 * 117.50327 * 134.98076 * 7 6 5 39 39 H 1.08995 * 117.54251 * 349.84251 * 7 6 5 40 40 H 1.08995 * 109.47349 * 59.99836 * 15 13 12 41 41 H 1.09000 * 109.47142 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.47203 * 299.99611 * 15 13 12 43 43 H 1.09000 * 109.47436 * 269.99730 * 19 18 16 44 44 H 1.09000 * 109.47148 * 30.00599 * 19 18 16 45 45 H 1.09004 * 109.46943 * 149.99854 * 19 18 16 46 46 H 1.09007 * 109.47078 * 149.99819 * 20 18 16 47 47 H 1.09003 * 109.46733 * 30.00541 * 20 18 16 48 48 H 0.97001 * 119.99646 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.64364 * 89.41510 * 29 6 5 50 50 H 1.08995 * 113.64645 * 220.41744 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.9487 2.7261 0.7046 6 6 4.9772 2.8342 -0.4265 7 6 6.4964 2.7162 -0.3466 8 6 5.8493 4.0250 -0.8081 9 1 5.9223 4.2772 -1.8660 10 6 5.8870 5.1934 0.1429 11 8 5.2386 5.1640 1.1621 12 8 6.6408 6.2668 -0.1422 13 6 6.6285 7.3551 0.8189 14 1 6.4577 6.9552 1.8185 15 6 5.5094 8.3362 0.4641 16 6 7.9541 8.0710 0.7841 17 8 8.7902 7.7596 -0.0374 18 7 8.2106 9.0575 1.6660 19 6 7.2004 9.4340 2.6580 20 6 9.4990 9.7538 1.6318 21 6 10.4791 9.0412 2.5277 22 1 10.1728 8.1582 3.0688 23 6 11.7666 9.5172 2.6574 24 7 12.1395 10.5929 1.9989 25 14 12.9812 8.6343 3.7685 26 1 14.2874 9.3401 3.7338 27 1 12.4614 8.6222 5.1594 28 1 13.1608 7.2383 3.2950 29 6 4.0020 2.0430 -1.3052 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9286 0.5459 0.3233 36 1 4.3919 2.5322 1.6813 37 1 3.2290 3.5445 0.7207 38 1 6.9944 2.1072 -1.1011 39 1 6.9492 2.7006 0.6448 40 1 4.5507 7.8184 0.4892 41 1 5.4999 9.1530 1.1858 42 1 5.6803 8.7361 -0.5354 43 1 6.5614 10.2157 2.2473 44 1 6.5944 8.5632 2.9081 45 1 7.6940 9.8034 3.5570 46 1 9.3675 10.7786 1.9795 47 1 9.8802 9.7628 0.6107 48 1 13.0452 10.9279 2.0905 49 1 3.2962 2.6705 -1.8494 50 1 4.4879 1.3017 -1.9395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869932483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:19 Heat of formation + Delta-G solvation = -130.584334 kcal Electronic energy + Delta-G solvation = -29551.976909 eV Core-core repulsion = 25352.944905 eV Total energy + Delta-G solvation = -4199.032004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12855 -41.02311 -40.21690 -38.31684 -37.37726 -36.72503 -34.93014 -34.39792 -32.98516 -31.52417 -29.63695 -27.71269 -26.85788 -26.58687 -25.68873 -23.95795 -23.82490 -23.44155 -21.61797 -20.46777 -19.52044 -19.05597 -18.69534 -18.18276 -17.76322 -17.45531 -17.28918 -16.83248 -16.52819 -16.35299 -16.28713 -15.89363 -15.06394 -15.01172 -14.83022 -14.53170 -14.36741 -14.17923 -13.79128 -13.73497 -13.69461 -13.52325 -13.35161 -13.15946 -13.07995 -12.98984 -12.84653 -12.75230 -12.63782 -12.54116 -12.25182 -12.22019 -12.00551 -11.95175 -11.76582 -11.73826 -11.39719 -11.38276 -10.86711 -10.66263 -10.63653 -10.34161 -9.54769 -8.25167 -6.39971 0.95159 1.21868 1.35503 1.39620 1.46931 1.59068 2.27557 2.40941 2.50587 2.86229 3.04614 3.25479 3.37666 3.51005 3.62086 3.63589 3.72010 3.77866 3.81753 3.91215 4.12520 4.23764 4.30309 4.41711 4.47884 4.53872 4.54436 4.57667 4.65861 4.71204 4.75397 4.81986 4.83924 4.88520 4.91280 4.94102 5.03215 5.05600 5.07795 5.15863 5.17520 5.19478 5.30794 5.32768 5.48806 5.75835 6.01546 6.38285 6.50959 6.64872 6.68064 7.17769 7.33631 8.81916 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002032 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.711355 B =13776.522187 C =14290.018527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.397 6.397 4 C 0.070 3.930 5 C -0.090 4.090 6 C -0.122 4.122 7 C -0.104 4.104 8 C -0.164 4.164 9 H 0.152 0.848 10 C 0.487 3.513 11 O -0.521 6.521 12 O -0.343 6.343 13 C 0.079 3.921 14 H 0.113 0.887 15 C -0.161 4.161 16 C 0.500 3.500 17 O -0.579 6.579 18 N -0.599 5.599 19 C 0.069 3.931 20 C 0.260 3.740 21 C -0.549 4.549 22 H 0.051 0.949 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.276 1.276 27 H -0.260 1.260 28 H -0.279 1.279 29 C -0.100 4.100 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.001 0.999 48 H 0.268 0.732 49 H 0.092 0.908 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.832 -19.899 -3.968 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.317 6.317 4 C 0.012 3.988 5 C -0.128 4.128 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.183 4.183 9 H 0.170 0.830 10 C 0.331 3.669 11 O -0.410 6.410 12 O -0.259 6.259 13 C 0.021 3.979 14 H 0.131 0.869 15 C -0.218 4.218 16 C 0.287 3.713 17 O -0.458 6.458 18 N -0.331 5.331 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.588 4.588 22 H 0.070 0.930 23 C -0.189 4.189 24 N -0.564 5.564 25 Si 0.791 3.209 26 H -0.201 1.201 27 H -0.185 1.185 28 H -0.205 1.205 29 C -0.137 4.137 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.571 -19.722 -4.086 30.251 hybrid contribution 1.248 0.162 0.596 1.392 sum -21.324 -19.559 -3.489 29.145 Atomic orbital electron populations 1.21781 0.93375 1.03264 1.02499 1.22714 0.96081 0.83023 1.00988 1.87944 1.21080 1.27982 1.94674 1.23594 0.80808 0.97946 0.96460 1.22657 0.95727 0.97658 0.96720 1.22103 0.92309 0.96842 1.00970 1.23117 0.92845 0.93954 1.04115 1.21797 1.10943 0.85883 0.99702 0.82991 1.23311 0.75174 0.82741 0.85634 1.90613 1.42043 1.80791 1.27538 1.86618 1.63755 1.26630 1.48879 1.22517 0.94009 0.87018 0.94326 0.86899 1.22274 0.96098 0.99098 1.04320 1.20641 0.88466 0.80851 0.81386 1.90661 1.49663 1.65669 1.39846 1.48053 1.17748 1.34954 1.32342 1.22190 0.91078 1.01902 0.92129 1.18853 0.79466 0.91797 0.95957 1.21657 0.97260 1.12304 1.27548 0.93044 1.25839 0.99886 0.95778 0.97434 1.70034 1.19720 1.23737 1.42888 0.85479 0.77862 0.78218 0.79330 1.20081 1.18471 1.20466 1.23037 0.95727 0.98449 0.96531 0.92346 0.89243 0.92702 0.92076 0.92603 0.87379 0.91322 0.90373 0.83798 0.88398 0.89560 0.87346 0.91397 0.89706 0.89592 0.90585 0.94811 0.98060 0.92270 0.88941 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.55 6.50 71.98 0.47 1.02 16 3 O -0.40 -7.01 10.35 -148.98 -1.54 -8.55 16 4 C 0.07 1.04 4.31 31.19 0.13 1.17 16 5 C -0.09 -1.79 6.31 30.98 0.20 -1.60 16 6 C -0.12 -2.13 2.88 -52.33 -0.15 -2.28 16 7 C -0.10 -1.74 10.24 30.50 0.31 -1.43 16 8 C -0.16 -3.54 6.30 -11.68 -0.07 -3.62 16 9 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 10 C 0.49 14.43 7.71 71.24 0.55 14.98 16 11 O -0.52 -16.46 14.36 21.95 0.32 -16.14 16 12 O -0.34 -12.04 9.42 -45.10 -0.42 -12.47 16 13 C 0.08 2.69 2.16 29.85 0.06 2.75 16 14 H 0.11 3.60 6.15 -2.39 -0.01 3.59 16 15 C -0.16 -4.07 9.27 71.98 0.67 -3.40 16 16 C 0.50 22.31 7.10 87.66 0.62 22.93 16 17 O -0.58 -32.06 16.09 15.72 0.25 -31.81 16 18 N -0.60 -25.98 2.86 -851.12 -2.43 -28.41 16 19 C 0.07 2.05 8.92 127.77 1.14 3.19 16 20 C 0.26 14.14 5.16 85.63 0.44 14.58 16 21 C -0.55 -32.04 9.39 25.60 0.24 -31.80 16 22 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 23 C 0.01 0.59 5.46 84.66 0.46 1.05 16 24 N -0.92 -55.86 13.29 21.45 0.28 -55.58 16 25 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 28 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 29 C -0.10 -1.33 7.93 30.98 0.25 -1.09 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.11 1.19 7.87 -2.39 -0.02 1.17 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 38 H 0.14 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.11 2.27 5.12 -2.39 -0.01 2.26 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.99 7.02 -2.39 -0.02 1.97 16 44 H 0.09 2.11 6.07 -2.39 -0.01 2.09 16 45 H 0.08 2.34 8.07 -2.38 -0.02 2.32 16 46 H 0.03 1.82 8.07 -2.38 -0.02 1.80 16 47 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.59 412.95 5.46 -74.13 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.92 Total: 15.96 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.06 Total: 15.68 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -2.15 Total: -83.99 kcal Atomic # 8 Polarization: -67.57 SS G_CDS: -1.40 Total: -68.97 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.59 5.46 -74.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869932483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.456 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds