Wall clock time and date at job start Tue Mar 31 2020 23:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47399 * 2 1 4 4 C 1.52995 * 109.47235 * 239.99770 * 2 1 3 5 5 N 1.46504 * 109.46747 * 120.00067 * 2 1 3 6 6 C 1.37310 * 125.83058 * 359.97438 * 5 2 1 7 7 N 1.29419 * 108.83459 * 179.75523 * 6 5 2 8 8 N 1.40169 * 108.13098 * 0.38541 * 7 6 5 9 9 C 1.46506 * 126.35073 * 179.87863 * 8 7 6 10 10 N 1.46908 * 109.46840 * 269.69034 * 9 8 7 11 11 C 1.46954 * 110.99966 * 66.20365 * 10 9 8 12 12 C 1.53057 * 109.36263 * 183.18687 * 11 10 9 13 13 N 1.46956 * 109.36162 * 301.59585 * 12 11 10 14 14 C 1.46899 * 110.99677 * 183.18894 * 13 12 11 15 15 C 1.50698 * 109.47292 * 170.00200 * 14 13 12 16 16 H 1.07998 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00183 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47247 * 59.99530 * 19 17 15 21 21 H 1.48503 * 109.46810 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46719 * 299.99556 * 19 17 15 23 23 C 1.46954 * 110.88042 * 59.32472 * 13 12 11 24 24 C 1.46956 * 110.99532 * 189.99960 * 10 9 8 25 25 C 1.34820 * 125.82579 * 180.02562 * 5 2 1 26 26 S 1.71195 * 126.30095 * 359.97438 * 25 5 2 27 27 H 1.08994 * 109.47276 * 300.00353 * 1 2 3 28 28 H 1.09003 * 109.46557 * 59.99752 * 1 2 3 29 29 H 1.08996 * 109.47316 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47337 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47072 * 300.00357 * 3 2 1 32 32 H 1.09008 * 109.47063 * 59.99667 * 3 2 1 33 33 H 1.09004 * 109.47271 * 300.00184 * 4 2 1 34 34 H 1.08995 * 109.47242 * 60.00119 * 4 2 1 35 35 H 1.08998 * 109.47059 * 180.02562 * 4 2 1 36 36 H 1.08003 * 125.58585 * 0.02562 * 6 5 2 37 37 H 1.08997 * 109.47176 * 149.69491 * 9 8 7 38 38 H 1.09003 * 109.47116 * 29.68866 * 9 8 7 39 39 H 1.08997 * 109.49355 * 63.21813 * 11 10 9 40 40 H 1.09004 * 109.48943 * 303.15264 * 11 10 9 41 41 H 1.09002 * 109.48707 * 181.63135 * 12 11 10 42 42 H 1.09002 * 109.48655 * 61.56567 * 12 11 10 43 43 H 1.09003 * 109.47063 * 289.99903 * 14 13 12 44 44 H 1.09002 * 109.47208 * 50.00081 * 14 13 12 45 45 H 0.96999 * 120.00715 * 180.02562 * 18 17 15 46 46 H 1.08997 * 109.49355 * 60.64341 * 23 13 12 47 47 H 1.09004 * 109.48943 * 180.70890 * 23 13 12 48 48 H 1.09002 * 109.48908 * 56.84799 * 24 10 9 49 49 H 1.09002 * 109.49369 * 296.77670 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 1.2366 -1.2547 2.1741 7 7 2.0057 -1.7798 3.0728 8 7 3.3363 -1.5552 2.6934 9 6 4.5317 -1.9797 3.4263 10 7 4.9326 -0.9219 4.3637 11 6 3.9249 -0.7431 5.4183 12 6 4.3401 0.4177 6.3253 13 7 5.6605 0.1348 6.9051 14 6 6.0614 1.1925 7.8424 15 6 7.2910 0.7560 8.5963 16 1 7.7305 -0.2106 8.3992 17 6 7.8544 1.5903 9.5384 18 7 7.3190 2.7672 9.7788 19 14 9.3791 1.0495 10.4725 20 1 10.4832 0.7948 9.5127 21 1 9.7842 2.1187 11.4201 22 1 9.0820 -0.1947 11.2268 23 6 6.6682 -0.0439 5.8505 24 6 6.2530 -1.2048 4.9434 25 6 3.3119 -0.8801 1.5253 26 16 4.6730 -0.3608 0.6261 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1391 35 1 3.1300 -0.7217 -1.2489 36 1 0.1567 -1.2629 2.1885 37 1 5.3422 -2.1673 2.7221 38 1 4.3131 -2.8925 3.9805 39 1 3.8497 -1.6566 6.0081 40 1 2.9587 -0.5224 4.9644 41 1 3.6089 0.5335 7.1254 42 1 4.3887 1.3365 5.7408 43 1 6.2799 2.1054 7.2882 44 1 5.2509 1.3802 8.5466 45 1 7.7154 3.3543 10.4414 46 1 6.7433 0.8696 5.2606 47 1 7.6343 -0.2646 6.3043 48 1 6.9842 -1.3206 4.1433 49 1 6.2043 -2.1235 5.5279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:11 Heat of formation + Delta-G solvation = 114.708244 kcal Electronic energy + Delta-G solvation = -28124.897729 eV Core-core repulsion = 24443.840783 eV Total energy + Delta-G solvation = -3681.056946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.05508 -38.99155 -37.84751 -35.44933 -33.20853 -32.24536 -32.20505 -30.49707 -28.77814 -28.02327 -27.72757 -26.25949 -24.57129 -23.67566 -23.02745 -22.49691 -21.41787 -20.98097 -19.26296 -18.13462 -17.01564 -16.59886 -16.33326 -16.09320 -15.78026 -15.64530 -14.79625 -14.66249 -14.40831 -14.32348 -14.28834 -13.75426 -13.40451 -13.37025 -13.21751 -12.89008 -12.81954 -12.33680 -12.19295 -12.11298 -12.03003 -11.84985 -11.66203 -11.55715 -11.34948 -11.28763 -11.07077 -10.90426 -10.83750 -10.68825 -10.63586 -10.43126 -10.27697 -9.74462 -9.19645 -8.44982 -8.37281 -7.66760 -7.47570 -7.25202 -6.01592 -4.03358 0.91618 1.15585 1.39600 2.16154 2.29497 3.34580 3.38482 3.41202 3.72561 3.87780 4.02877 4.21729 4.23193 4.40329 4.42972 4.73916 4.88435 4.91741 4.97964 4.99499 5.08476 5.26592 5.27282 5.28349 5.33149 5.33914 5.45406 5.47798 5.51777 5.61943 5.74577 5.80302 5.87103 5.98523 6.00642 6.08147 6.14855 6.22750 6.38138 6.54612 6.68203 6.87223 6.99334 7.06320 7.31927 7.36719 7.79482 8.08125 8.19615 8.54247 9.03621 9.60830 11.09313 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.002413 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.747703 B =11599.052068 C =11713.355213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.175 3.825 3 C -0.176 4.176 4 C -0.174 4.174 5 N -0.491 5.491 6 C 0.243 3.757 7 N -0.277 5.277 8 N -0.367 5.367 9 C 0.312 3.688 10 N -0.546 5.546 11 C 0.063 3.937 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.195 3.805 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.069 3.931 24 C 0.067 3.933 25 C 0.476 3.524 26 S -0.573 6.573 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.237 0.763 37 H 0.126 0.874 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.029 0.971 43 H -0.008 1.008 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.032 0.968 47 H 0.091 0.909 48 H 0.080 0.920 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.527 -9.063 -21.409 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 C -0.234 4.234 4 C -0.233 4.233 5 N -0.192 5.192 6 C -0.057 4.057 7 N -0.096 5.096 8 N -0.160 5.160 9 C 0.102 3.898 10 N -0.273 5.273 11 C -0.065 4.065 12 C -0.070 4.070 13 N -0.263 5.263 14 C 0.070 3.930 15 C -0.547 4.547 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.060 4.060 24 C -0.060 4.060 25 C 0.116 3.884 26 S -0.445 6.445 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.253 0.747 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.010 0.990 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.582 -9.157 -20.835 28.158 hybrid contribution -0.282 0.052 0.530 0.602 sum -16.863 -9.105 -20.305 27.921 Atomic orbital electron populations 1.22262 0.91959 1.03331 1.04440 1.20989 0.94645 0.93456 0.81626 1.22432 1.06319 0.92001 1.02661 1.22424 1.06218 0.99658 0.94956 1.46640 1.04314 1.46668 1.21611 1.26435 1.00473 0.93479 0.85309 1.77247 0.88212 1.22482 1.21698 1.49504 1.04780 1.44762 1.16978 1.22233 0.82441 0.91876 0.93240 1.61988 1.04356 1.43053 1.17891 1.22205 0.93894 0.99042 0.91386 1.22023 0.93685 0.95268 0.96007 1.62318 1.00334 1.48109 1.15573 1.19690 0.96362 0.87152 0.89838 1.21101 1.10581 1.02489 1.20503 0.91933 1.24991 0.97631 0.94896 0.97068 1.69946 1.40757 1.08955 1.34150 0.86556 0.83048 0.78132 0.79642 1.20209 1.21375 1.20201 1.21989 0.96972 0.95672 0.91385 1.22214 0.87779 0.98935 0.97095 1.23754 0.90057 0.86817 0.87756 1.93294 1.24858 1.68090 1.58220 0.91205 0.89229 0.91324 0.87933 0.90390 0.92320 0.92533 0.90369 0.88000 0.74717 0.85682 0.90656 0.93854 0.91534 0.91007 0.95294 0.99021 0.95300 0.92855 0.94939 0.89048 0.90137 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 7.35 37.16 0.27 -0.23 16 2 C 0.17 1.17 1.06 -131.82 -0.14 1.03 16 3 C -0.18 -1.42 8.49 37.16 0.32 -1.10 16 4 C -0.17 -1.21 8.49 37.16 0.32 -0.89 16 5 N -0.49 -4.42 2.61 -105.27 -0.28 -4.69 16 6 C 0.24 1.77 11.56 -89.15 -1.03 0.74 16 7 N -0.28 -2.91 11.51 29.86 0.34 -2.57 16 8 N -0.37 -4.57 3.34 -64.99 -0.22 -4.78 16 9 C 0.31 3.94 5.94 -63.30 -0.38 3.56 16 10 N -0.55 -8.32 4.85 -238.35 -1.16 -9.47 16 11 C 0.06 0.99 5.51 -3.77 -0.02 0.97 16 12 C 0.06 1.13 5.61 -3.76 -0.02 1.11 16 13 N -0.54 -11.81 4.70 -235.90 -1.11 -12.92 16 14 C 0.19 5.16 4.72 -4.98 -0.02 5.13 16 15 C -0.51 -14.32 8.47 -34.44 -0.29 -14.62 16 16 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 24 C 0.07 1.05 5.61 -3.76 -0.02 1.03 16 25 C 0.48 6.06 7.36 -86.74 -0.64 5.42 16 26 S -0.57 -8.96 25.68 -107.50 -2.76 -11.72 16 27 H 0.07 0.18 7.85 -51.93 -0.41 -0.23 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.14 7.85 -51.93 -0.41 -0.27 16 30 H 0.10 1.18 5.79 -51.93 -0.30 0.87 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 1.03 5.79 -51.93 -0.30 0.73 16 36 H 0.24 0.53 7.13 -52.48 -0.37 0.15 16 37 H 0.13 1.55 7.58 -51.93 -0.39 1.15 16 38 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 41 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 44 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.91 6.79 -51.93 -0.35 1.55 16 48 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -34.42 392.49 -13.62 -48.04 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.30 Total: -3.25 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.78 Total: 4.98 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -1.68 Total: -60.70 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -2.76 Total: -11.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.42 -13.62 -48.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.747 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds