Wall clock time and date at job start Tue Mar 31 2020 23:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47399 * 2 1 4 4 C 1.52995 * 109.47235 * 239.99770 * 2 1 3 5 5 N 1.46504 * 109.46747 * 120.00067 * 2 1 3 6 6 C 1.37310 * 125.83058 * 359.97438 * 5 2 1 7 7 N 1.29419 * 108.83459 * 179.75523 * 6 5 2 8 8 N 1.40169 * 108.13098 * 0.38541 * 7 6 5 9 9 C 1.46506 * 126.35073 * 179.87863 * 8 7 6 10 10 N 1.46908 * 109.46840 * 269.69034 * 9 8 7 11 11 C 1.46954 * 110.99966 * 66.20365 * 10 9 8 12 12 C 1.53057 * 109.36263 * 183.18687 * 11 10 9 13 13 N 1.46956 * 109.36162 * 301.59585 * 12 11 10 14 14 C 1.46899 * 110.99677 * 183.18894 * 13 12 11 15 15 C 1.50698 * 109.47292 * 170.00200 * 14 13 12 16 16 H 1.07998 * 119.99743 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00183 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47247 * 59.99530 * 19 17 15 21 21 H 1.48503 * 109.46810 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46719 * 299.99556 * 19 17 15 23 23 C 1.46954 * 110.88042 * 59.32472 * 13 12 11 24 24 C 1.46956 * 110.99532 * 189.99960 * 10 9 8 25 25 C 1.34820 * 125.82579 * 180.02562 * 5 2 1 26 26 S 1.71195 * 126.30095 * 359.97438 * 25 5 2 27 27 H 1.08994 * 109.47276 * 300.00353 * 1 2 3 28 28 H 1.09003 * 109.46557 * 59.99752 * 1 2 3 29 29 H 1.08996 * 109.47316 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47337 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47072 * 300.00357 * 3 2 1 32 32 H 1.09008 * 109.47063 * 59.99667 * 3 2 1 33 33 H 1.09004 * 109.47271 * 300.00184 * 4 2 1 34 34 H 1.08995 * 109.47242 * 60.00119 * 4 2 1 35 35 H 1.08998 * 109.47059 * 180.02562 * 4 2 1 36 36 H 1.08003 * 125.58585 * 0.02562 * 6 5 2 37 37 H 1.08997 * 109.47176 * 149.69491 * 9 8 7 38 38 H 1.09003 * 109.47116 * 29.68866 * 9 8 7 39 39 H 1.08997 * 109.49355 * 63.21813 * 11 10 9 40 40 H 1.09004 * 109.48943 * 303.15264 * 11 10 9 41 41 H 1.09002 * 109.48707 * 181.63135 * 12 11 10 42 42 H 1.09002 * 109.48655 * 61.56567 * 12 11 10 43 43 H 1.09003 * 109.47063 * 289.99903 * 14 13 12 44 44 H 1.09002 * 109.47208 * 50.00081 * 14 13 12 45 45 H 0.96999 * 120.00715 * 180.02562 * 18 17 15 46 46 H 1.08997 * 109.49355 * 60.64341 * 23 13 12 47 47 H 1.09004 * 109.48943 * 180.70890 * 23 13 12 48 48 H 1.09002 * 109.48908 * 56.84799 * 24 10 9 49 49 H 1.09002 * 109.49369 * 296.77670 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 1.2366 -1.2547 2.1741 7 7 2.0057 -1.7798 3.0728 8 7 3.3363 -1.5552 2.6934 9 6 4.5317 -1.9797 3.4263 10 7 4.9326 -0.9219 4.3637 11 6 3.9249 -0.7431 5.4183 12 6 4.3401 0.4177 6.3253 13 7 5.6605 0.1348 6.9051 14 6 6.0614 1.1925 7.8424 15 6 7.2910 0.7560 8.5963 16 1 7.7305 -0.2106 8.3992 17 6 7.8544 1.5903 9.5384 18 7 7.3190 2.7672 9.7788 19 14 9.3791 1.0495 10.4725 20 1 10.4832 0.7948 9.5127 21 1 9.7842 2.1187 11.4201 22 1 9.0820 -0.1947 11.2268 23 6 6.6682 -0.0439 5.8505 24 6 6.2530 -1.2048 4.9434 25 6 3.3119 -0.8801 1.5253 26 16 4.6730 -0.3608 0.6261 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1391 35 1 3.1300 -0.7217 -1.2489 36 1 0.1567 -1.2629 2.1885 37 1 5.3422 -2.1673 2.7221 38 1 4.3131 -2.8925 3.9805 39 1 3.8497 -1.6566 6.0081 40 1 2.9587 -0.5224 4.9644 41 1 3.6089 0.5335 7.1254 42 1 4.3887 1.3365 5.7408 43 1 6.2799 2.1054 7.2882 44 1 5.2509 1.3802 8.5466 45 1 7.7154 3.3543 10.4414 46 1 6.7433 0.8696 5.2606 47 1 7.6343 -0.2646 6.3043 48 1 6.9842 -1.3206 4.1433 49 1 6.2043 -2.1235 5.5279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872734013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:10 Heat of formation + Delta-G solvation = 92.852938 kcal Electronic energy + Delta-G solvation = -28125.845446 eV Core-core repulsion = 24443.840783 eV Total energy + Delta-G solvation = -3682.004663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.87079 -40.34823 -38.62509 -36.88766 -34.82964 -33.73744 -32.97554 -31.97123 -30.20573 -28.75557 -28.31762 -27.71280 -25.91586 -24.75485 -24.36071 -23.57439 -23.10811 -21.69465 -20.78610 -18.94184 -18.48281 -18.02469 -17.51916 -17.05459 -16.82741 -16.47274 -16.41401 -15.98712 -15.85645 -15.36853 -15.29731 -14.89386 -14.82482 -14.79161 -14.11610 -13.85628 -13.63357 -13.37079 -13.17216 -13.13026 -13.09518 -12.83818 -12.74988 -12.68799 -12.55827 -12.46225 -12.38758 -12.32932 -12.20129 -12.12748 -12.04843 -11.89855 -11.60188 -11.33537 -11.23218 -10.63065 -9.60276 -9.13285 -8.76519 -8.61890 -8.22160 -6.33092 -0.04772 0.25293 0.74278 1.17422 1.40908 1.44602 1.52335 1.58748 2.39294 2.69545 3.01578 3.09737 3.21215 3.49306 3.64294 3.75782 3.78864 3.90283 3.94397 4.02922 4.07940 4.23473 4.26237 4.36052 4.39925 4.57403 4.63821 4.68121 4.70538 4.77015 4.79641 4.84339 4.87647 4.88710 4.90777 4.95907 5.00417 5.17285 5.18691 5.21478 5.37573 5.43514 5.55767 5.60495 5.72129 5.84995 6.00991 6.13071 6.25342 6.53818 6.82083 7.36796 8.89298 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.023140 B = 0.002413 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.747703 B =11599.052068 C =11713.355213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 C -0.174 4.174 4 C -0.170 4.170 5 N -0.481 5.481 6 C 0.266 3.734 7 N -0.301 5.301 8 N -0.372 5.372 9 C 0.316 3.684 10 N -0.562 5.562 11 C 0.081 3.919 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.210 3.790 15 C -0.524 4.524 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.937 5.937 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.070 3.930 24 C 0.081 3.919 25 C 0.479 3.521 26 S -0.651 6.651 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.291 0.709 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.009 0.991 43 H -0.045 1.045 44 H 0.004 0.996 45 H 0.265 0.735 46 H 0.009 0.991 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.840 -11.224 -22.006 31.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.089 3.911 3 C -0.232 4.232 4 C -0.228 4.228 5 N -0.181 5.181 6 C -0.033 4.033 7 N -0.120 5.120 8 N -0.163 5.163 9 C 0.106 3.894 10 N -0.289 5.289 11 C -0.047 4.047 12 C -0.069 4.069 13 N -0.263 5.263 14 C 0.084 3.916 15 C -0.562 4.562 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.058 4.058 24 C -0.047 4.047 25 C 0.114 3.886 26 S -0.523 6.523 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.306 0.694 37 H 0.143 0.857 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.027 0.973 43 H -0.027 1.027 44 H 0.022 0.978 45 H 0.073 0.927 46 H 0.027 0.973 47 H 0.097 0.903 48 H 0.118 0.882 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.941 -11.340 -21.461 30.789 hybrid contribution 0.272 0.768 0.655 1.045 sum -18.669 -10.572 -20.807 29.887 Atomic orbital electron populations 1.22303 0.88116 1.05135 1.05875 1.21313 0.97256 0.92009 0.80543 1.22377 1.03879 0.93496 1.03466 1.22357 1.03949 1.00479 0.96057 1.46931 1.03121 1.45689 1.22365 1.27551 1.02122 0.90452 0.83145 1.77297 0.87108 1.24417 1.23147 1.49505 1.05821 1.44335 1.16641 1.22206 0.82975 0.91507 0.92666 1.61876 1.04005 1.45037 1.17979 1.21973 0.94275 0.97476 0.90944 1.22081 0.92219 0.96206 0.96407 1.62272 1.02012 1.45793 1.16231 1.19341 0.95306 0.87084 0.89900 1.21408 1.11162 1.02766 1.20845 0.91474 1.25969 1.01057 0.94771 0.97993 1.70089 1.42500 1.10228 1.34873 0.85388 0.78766 0.77966 0.78217 1.19127 1.20946 1.19037 1.21973 0.96171 0.96590 0.91088 1.22032 0.88647 0.97026 0.96958 1.23348 0.90706 0.86854 0.87676 1.93409 1.27640 1.71085 1.60210 0.90071 0.87620 0.89282 0.91705 0.88188 0.92870 0.91811 0.88317 0.91506 0.69388 0.85720 0.88481 0.93115 0.90457 0.90915 0.97292 1.02701 0.97819 0.92651 0.97297 0.90318 0.88171 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.24 7.35 71.98 0.53 0.29 16 2 C 0.17 1.87 1.06 3.60 0.00 1.88 16 3 C -0.17 -2.66 8.49 71.98 0.61 -2.05 16 4 C -0.17 -2.10 8.49 71.98 0.61 -1.49 16 5 N -0.48 -7.58 2.61 -486.98 -1.27 -8.86 16 6 C 0.27 2.82 11.56 179.83 2.08 4.90 16 7 N -0.30 -5.40 11.51 -59.44 -0.68 -6.08 16 8 N -0.37 -8.66 3.34 -359.52 -1.20 -9.87 16 9 C 0.32 7.52 5.94 170.80 1.01 8.53 16 10 N -0.56 -16.69 4.85 -908.02 -4.40 -21.10 16 11 C 0.08 2.48 5.51 86.31 0.48 2.96 16 12 C 0.06 2.32 5.61 86.31 0.48 2.81 16 13 N -0.54 -24.35 4.70 -900.26 -4.23 -28.58 16 14 C 0.21 11.70 4.72 85.56 0.40 12.10 16 15 C -0.52 -30.23 8.47 25.60 0.22 -30.02 16 16 H 0.07 3.74 7.13 -2.91 -0.02 3.72 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 19 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.07 2.87 5.43 86.31 0.47 3.34 16 24 C 0.08 2.46 5.61 86.31 0.48 2.94 16 25 C 0.48 11.86 7.36 178.99 1.32 13.18 16 26 S -0.65 -21.31 25.68 -56.49 -1.45 -22.77 16 27 H 0.08 0.00 7.85 -2.39 -0.02 -0.02 16 28 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 -0.16 7.85 -2.39 -0.02 -0.18 16 30 H 0.06 1.56 5.79 -2.39 -0.01 1.54 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.38 5.79 -2.39 -0.01 1.37 16 36 H 0.29 -0.52 7.13 -2.91 -0.02 -0.54 16 37 H 0.13 2.99 7.58 -2.39 -0.02 2.98 16 38 H 0.10 1.92 8.12 -2.39 -0.02 1.90 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 2.22 6.71 -2.39 -0.02 2.20 16 41 H 0.07 2.78 8.07 -2.39 -0.02 2.76 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H -0.04 -2.76 8.12 -2.39 -0.02 -2.78 16 44 H 0.00 0.22 8.03 -2.39 -0.02 0.20 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 47 H 0.08 3.37 6.79 -2.39 -0.02 3.36 16 48 H 0.10 2.68 8.07 -2.39 -0.02 2.66 16 49 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -80.61 392.49 -0.85 -81.47 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.92 Total: 6.54 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 9.16 Total: 19.85 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -11.51 Total: -131.93 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: -21.31 SS G_CDS: -1.45 Total: -22.77 kcal Total: -80.61 -0.85 -81.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.318 kcal (2) G-P(sol) polarization free energy of solvation -80.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds