Wall clock time and date at job start Tue Mar 31 2020 23:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46859 * 2 1 4 4 C 1.50699 * 109.46844 * 119.99634 * 2 1 3 5 5 N 1.29411 * 125.58468 * 300.02374 * 4 2 1 6 6 N 1.40176 * 108.13338 * 179.97438 * 5 4 2 7 7 C 1.46497 * 126.35390 * 179.97438 * 6 5 4 8 8 N 1.46909 * 109.47230 * 90.02707 * 7 6 5 9 9 C 1.46959 * 110.99305 * 293.79993 * 8 7 6 10 10 C 1.53052 * 109.36001 * 176.81095 * 9 8 7 11 11 N 1.46952 * 109.36762 * 58.40153 * 10 9 8 12 12 C 1.46897 * 111.00276 * 176.81385 * 11 10 9 13 13 C 1.50706 * 109.46895 * 293.79310 * 12 11 10 14 14 H 1.07999 * 119.99918 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99748 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99653 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00245 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47336 * 89.99746 * 17 15 13 19 19 H 1.48500 * 109.46848 * 209.99703 * 17 15 13 20 20 H 1.48500 * 109.47165 * 329.99403 * 17 15 13 21 21 C 1.46964 * 110.87996 * 300.67977 * 11 10 9 22 22 C 1.46952 * 111.00125 * 170.00138 * 8 7 6 23 23 C 1.34943 * 107.29370 * 359.97438 * 6 5 4 24 24 S 1.71200 * 126.30461 * 180.02562 * 23 6 5 25 25 N 1.34815 * 107.39129 * 0.02562 * 23 6 5 26 26 C 1.46505 * 125.82317 * 180.26442 * 25 23 6 27 27 H 1.08993 * 109.47132 * 60.00151 * 1 2 3 28 28 H 1.09007 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47189 * 299.99950 * 1 2 3 30 30 H 1.08997 * 109.46734 * 239.99771 * 2 1 3 31 31 H 1.08998 * 109.46871 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47179 * 299.99956 * 3 2 1 33 33 H 1.09003 * 109.47854 * 59.99924 * 3 2 1 34 34 H 1.08997 * 109.47486 * 210.02039 * 7 6 5 35 35 H 1.08997 * 109.47393 * 330.02714 * 7 6 5 36 36 H 1.09004 * 109.49096 * 296.77196 * 9 8 7 37 37 H 1.08999 * 109.49419 * 56.84208 * 9 8 7 38 38 H 1.09005 * 109.48919 * 298.43050 * 10 9 8 39 39 H 1.09007 * 109.48735 * 178.36694 * 10 9 8 40 40 H 1.09000 * 109.47555 * 53.79589 * 12 11 10 41 41 H 1.09005 * 109.47013 * 173.79910 * 12 11 10 42 42 H 0.97007 * 120.00141 * 179.97438 * 16 15 13 43 43 H 1.09008 * 109.48504 * 299.35276 * 21 11 10 44 44 H 1.08999 * 109.49337 * 179.28809 * 21 11 10 45 45 H 1.09007 * 109.48864 * 303.15119 * 22 8 7 46 46 H 1.08996 * 109.48876 * 63.22201 * 22 8 7 47 47 H 1.08996 * 109.47166 * 269.68503 * 26 25 23 48 48 H 1.08998 * 109.47491 * 29.69311 * 26 25 23 49 49 H 1.09002 * 109.46689 * 149.69490 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7868 -0.3639 2.4530 6 7 2.4303 -1.2747 3.3022 7 6 2.4165 -1.2552 4.7670 8 7 1.2810 -2.0485 5.2566 9 6 0.0036 -1.4215 4.8897 10 6 -1.1507 -2.3164 5.3470 11 7 -1.0646 -2.5183 6.8001 12 6 -2.2000 -3.3115 7.2896 13 6 -3.4741 -2.5257 7.1151 14 1 -3.4435 -1.5362 6.6833 15 6 -4.6789 -3.0704 7.5057 16 7 -5.7908 -2.3849 7.3530 17 14 -4.7320 -4.7821 8.2519 18 1 -4.5815 -4.6844 9.7260 19 1 -6.0320 -5.4229 7.9285 20 1 -3.6248 -5.5997 7.6943 21 6 0.2129 -3.1452 7.1670 22 6 1.3672 -2.2503 6.7097 23 6 3.0649 -2.1729 2.5202 24 16 4.0025 -3.5009 3.0571 25 7 2.8247 -1.8318 1.2382 26 6 3.3191 -2.5406 0.0552 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.3463 -1.6803 5.1448 35 1 2.3187 -0.2272 5.1158 36 1 -0.0766 -0.4485 5.3745 37 1 -0.0416 -1.2940 3.8081 38 1 -1.0862 -3.2800 4.8415 39 1 -2.0998 -1.8396 5.1017 40 1 -2.2655 -4.2404 6.7231 41 1 -2.0555 -3.5394 8.3457 42 1 -6.6386 -2.7683 7.6274 43 1 0.2930 -4.1182 6.6822 44 1 0.2581 -3.2727 8.2486 45 1 2.3163 -2.7271 6.9549 46 1 1.3026 -1.2867 7.2151 47 1 4.2811 -2.1236 -0.2426 48 1 3.4383 -3.5986 0.2889 49 1 2.6056 -2.4269 -0.7610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:43 Heat of formation + Delta-G solvation = 110.835867 kcal Electronic energy + Delta-G solvation = -28203.304122 eV Core-core repulsion = 24522.079257 eV Total energy + Delta-G solvation = -3681.224865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.01334 -38.99899 -36.79742 -35.79727 -34.75544 -32.58499 -31.79491 -30.57763 -29.17943 -28.08287 -27.74459 -26.36515 -24.59651 -23.61603 -23.35812 -22.66006 -21.10199 -20.52260 -19.32087 -18.28343 -17.23337 -17.02294 -16.78601 -16.15896 -15.86108 -15.56989 -14.83146 -14.75325 -14.48275 -14.35608 -14.05268 -13.90758 -13.85573 -13.41433 -13.30813 -13.14031 -12.71127 -12.56763 -12.40255 -12.27812 -12.02739 -11.96150 -11.89041 -11.56003 -11.50082 -11.37960 -11.05342 -10.97468 -10.85032 -10.68180 -10.61767 -10.43847 -10.07883 -9.84497 -9.28383 -8.57945 -8.44249 -7.77826 -7.65479 -7.39863 -6.06547 -4.03955 0.90397 1.16640 1.35088 2.07542 2.26849 3.28645 3.36083 3.39379 3.64356 3.79963 3.91479 4.18115 4.38196 4.39480 4.41694 4.64532 4.72364 4.73410 4.84000 4.97375 5.04919 5.10809 5.16357 5.18523 5.25831 5.27846 5.33434 5.35409 5.42205 5.55959 5.64646 5.65962 5.73181 5.77189 5.87010 5.94601 6.04816 6.14065 6.29050 6.42960 6.58415 6.80497 6.85469 6.94928 6.98223 7.10813 7.57776 7.87870 8.01692 8.64054 9.00740 9.55407 11.06440 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002977 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.824611 B = 9402.542630 C =10503.383342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.013 4.013 3 C -0.145 4.145 4 C 0.272 3.728 5 N -0.269 5.269 6 N -0.367 5.367 7 C 0.314 3.686 8 N -0.548 5.548 9 C 0.060 3.940 10 C 0.070 3.930 11 N -0.529 5.529 12 C 0.163 3.837 13 C -0.509 4.509 14 H 0.080 0.920 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.054 3.946 22 C 0.071 3.929 23 C 0.475 3.525 24 S -0.581 6.581 25 N -0.499 5.499 26 C 0.081 3.919 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.092 0.908 40 H -0.011 1.011 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.911 6.870 -18.014 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.008 4.008 5 N -0.088 5.088 6 N -0.159 5.159 7 C 0.104 3.896 8 N -0.275 5.275 9 C -0.068 4.068 10 C -0.058 4.058 11 N -0.254 5.254 12 C 0.037 3.963 13 C -0.548 4.548 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.075 4.075 22 C -0.057 4.057 23 C 0.115 3.885 24 S -0.454 6.454 25 N -0.200 5.200 26 C -0.060 4.060 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.007 0.993 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.128 0.872 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.778 6.758 -16.914 26.160 hybrid contribution -0.364 -0.880 -0.295 0.997 sum 18.413 5.878 -17.209 25.879 Atomic orbital electron populations 1.21896 0.91455 1.03296 1.03972 1.19956 0.97768 0.96167 0.89536 1.21864 1.01354 0.93201 1.03873 1.24880 0.92369 0.87410 0.96146 1.77206 1.18372 1.15094 0.98126 1.49410 1.38874 1.20092 1.07533 1.22203 0.97860 0.98541 0.71028 1.61988 1.01851 1.48394 1.15221 1.22292 0.88099 0.96654 0.99759 1.21983 0.97488 0.97806 0.88538 1.62139 1.01623 1.49438 1.12170 1.20155 0.89423 0.92003 0.94764 1.21014 0.88756 1.03627 1.41369 0.90247 1.24891 0.95560 0.97363 0.95478 1.69893 0.98191 1.37660 1.48215 0.86866 0.77611 0.85297 0.80047 1.20101 1.21198 1.19220 1.22113 0.89722 0.95497 1.00123 1.22088 0.99487 0.99809 0.84315 1.23807 0.90237 0.91863 0.82637 1.93379 1.47631 1.21168 1.83210 1.46091 1.42351 1.24135 1.07381 1.22203 1.00597 0.99787 0.83434 0.90547 0.91928 0.90834 0.88264 0.92239 0.90584 0.91001 0.85731 0.90560 0.93672 0.91309 0.95436 0.88939 0.99288 0.95693 0.92668 0.94716 0.90441 0.90081 0.93475 0.89583 0.87223 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 37.16 0.34 -0.51 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -0.64 9.17 37.16 0.34 -0.30 16 4 C 0.27 2.47 6.49 -154.19 -1.00 1.47 16 5 N -0.27 -3.13 11.49 32.97 0.38 -2.75 16 6 N -0.37 -4.82 3.35 -64.99 -0.22 -5.04 16 7 C 0.31 4.00 5.94 -63.31 -0.38 3.62 16 8 N -0.55 -8.28 4.85 -238.37 -1.16 -9.43 16 9 C 0.06 0.98 5.51 -3.77 -0.02 0.96 16 10 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 11 N -0.53 -11.25 4.70 -235.89 -1.11 -12.36 16 12 C 0.16 4.01 3.79 -4.97 -0.02 4.00 16 13 C -0.51 -14.52 9.03 -34.44 -0.31 -14.83 16 14 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 17 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 21 C 0.05 0.96 5.61 -3.76 -0.02 0.94 16 22 C 0.07 1.02 5.61 -3.77 -0.02 1.00 16 23 C 0.47 6.44 7.86 -86.73 -0.68 5.76 16 24 S -0.58 -9.61 29.60 -107.50 -3.18 -12.79 16 25 N -0.50 -4.94 3.14 -121.97 -0.38 -5.33 16 26 C 0.08 0.48 10.56 59.85 0.63 1.11 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.27 6.73 -51.93 -0.35 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.13 1.53 7.58 -51.93 -0.39 1.13 16 35 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.12 6.69 -51.93 -0.35 0.77 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.04 6.79 -51.93 -0.35 1.69 16 40 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 41 H 0.03 0.61 7.45 -51.93 -0.39 0.23 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 45 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 0.81 7.63 -51.93 -0.40 0.41 16 49 H 0.09 0.26 7.05 -51.93 -0.37 -0.11 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -35.74 398.81 -13.54 -49.28 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -8.43 Total: -3.96 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -1.55 Total: 6.13 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -1.71 Total: -61.72 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -9.61 SS G_CDS: -3.18 Total: -12.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.74 -13.54 -49.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.115 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds