Wall clock time and date at job start Tue Mar 31 2020 23:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46859 * 2 1 4 4 C 1.50699 * 109.46844 * 119.99634 * 2 1 3 5 5 N 1.29411 * 125.58468 * 300.02374 * 4 2 1 6 6 N 1.40176 * 108.13338 * 179.97438 * 5 4 2 7 7 C 1.46497 * 126.35390 * 179.97438 * 6 5 4 8 8 N 1.46909 * 109.47230 * 90.02707 * 7 6 5 9 9 C 1.46959 * 110.99305 * 293.79993 * 8 7 6 10 10 C 1.53052 * 109.36001 * 176.81095 * 9 8 7 11 11 N 1.46952 * 109.36762 * 58.40153 * 10 9 8 12 12 C 1.46897 * 111.00276 * 176.81385 * 11 10 9 13 13 C 1.50706 * 109.46895 * 293.79310 * 12 11 10 14 14 H 1.07999 * 119.99918 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99748 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99653 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00245 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47336 * 89.99746 * 17 15 13 19 19 H 1.48500 * 109.46848 * 209.99703 * 17 15 13 20 20 H 1.48500 * 109.47165 * 329.99403 * 17 15 13 21 21 C 1.46964 * 110.87996 * 300.67977 * 11 10 9 22 22 C 1.46952 * 111.00125 * 170.00138 * 8 7 6 23 23 C 1.34943 * 107.29370 * 359.97438 * 6 5 4 24 24 S 1.71200 * 126.30461 * 180.02562 * 23 6 5 25 25 N 1.34815 * 107.39129 * 0.02562 * 23 6 5 26 26 C 1.46505 * 125.82317 * 180.26442 * 25 23 6 27 27 H 1.08993 * 109.47132 * 60.00151 * 1 2 3 28 28 H 1.09007 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47189 * 299.99950 * 1 2 3 30 30 H 1.08997 * 109.46734 * 239.99771 * 2 1 3 31 31 H 1.08998 * 109.46871 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47179 * 299.99956 * 3 2 1 33 33 H 1.09003 * 109.47854 * 59.99924 * 3 2 1 34 34 H 1.08997 * 109.47486 * 210.02039 * 7 6 5 35 35 H 1.08997 * 109.47393 * 330.02714 * 7 6 5 36 36 H 1.09004 * 109.49096 * 296.77196 * 9 8 7 37 37 H 1.08999 * 109.49419 * 56.84208 * 9 8 7 38 38 H 1.09005 * 109.48919 * 298.43050 * 10 9 8 39 39 H 1.09007 * 109.48735 * 178.36694 * 10 9 8 40 40 H 1.09000 * 109.47555 * 53.79589 * 12 11 10 41 41 H 1.09005 * 109.47013 * 173.79910 * 12 11 10 42 42 H 0.97007 * 120.00141 * 179.97438 * 16 15 13 43 43 H 1.09008 * 109.48504 * 299.35276 * 21 11 10 44 44 H 1.08999 * 109.49337 * 179.28809 * 21 11 10 45 45 H 1.09007 * 109.48864 * 303.15119 * 22 8 7 46 46 H 1.08996 * 109.48876 * 63.22201 * 22 8 7 47 47 H 1.08996 * 109.47166 * 269.68503 * 26 25 23 48 48 H 1.08998 * 109.47491 * 29.69311 * 26 25 23 49 49 H 1.09002 * 109.46689 * 149.69490 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7868 -0.3639 2.4530 6 7 2.4303 -1.2747 3.3022 7 6 2.4165 -1.2552 4.7670 8 7 1.2810 -2.0485 5.2566 9 6 0.0036 -1.4215 4.8897 10 6 -1.1507 -2.3164 5.3470 11 7 -1.0646 -2.5183 6.8001 12 6 -2.2000 -3.3115 7.2896 13 6 -3.4741 -2.5257 7.1151 14 1 -3.4435 -1.5362 6.6833 15 6 -4.6789 -3.0704 7.5057 16 7 -5.7908 -2.3849 7.3530 17 14 -4.7320 -4.7821 8.2519 18 1 -4.5815 -4.6844 9.7260 19 1 -6.0320 -5.4229 7.9285 20 1 -3.6248 -5.5997 7.6943 21 6 0.2129 -3.1452 7.1670 22 6 1.3672 -2.2503 6.7097 23 6 3.0649 -2.1729 2.5202 24 16 4.0025 -3.5009 3.0571 25 7 2.8247 -1.8318 1.2382 26 6 3.3191 -2.5406 0.0552 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.3463 -1.6803 5.1448 35 1 2.3187 -0.2272 5.1158 36 1 -0.0766 -0.4485 5.3745 37 1 -0.0416 -1.2940 3.8081 38 1 -1.0862 -3.2800 4.8415 39 1 -2.0998 -1.8396 5.1017 40 1 -2.2655 -4.2404 6.7231 41 1 -2.0555 -3.5394 8.3457 42 1 -6.6386 -2.7683 7.6274 43 1 0.2930 -4.1182 6.6822 44 1 0.2581 -3.2727 8.2486 45 1 2.3163 -2.7271 6.9549 46 1 1.3026 -1.2867 7.2151 47 1 4.2811 -2.1236 -0.2426 48 1 3.4383 -3.5986 0.2889 49 1 2.6056 -2.4269 -0.7610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872734498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:42 Heat of formation + Delta-G solvation = 86.927897 kcal Electronic energy + Delta-G solvation = -28204.340849 eV Core-core repulsion = 24522.079257 eV Total energy + Delta-G solvation = -3682.261592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.90803 -40.37296 -37.78145 -36.63604 -35.92407 -34.57704 -32.87246 -31.99668 -30.64935 -29.17363 -28.13904 -27.60047 -25.84228 -24.80450 -24.35936 -23.82637 -22.94408 -21.20828 -20.77135 -19.18351 -18.99575 -18.17308 -17.92776 -17.23661 -16.89501 -16.45112 -16.33977 -15.98073 -15.86860 -15.50602 -15.36125 -15.23334 -14.73404 -14.45772 -14.38317 -14.10748 -13.93946 -13.72757 -13.42564 -13.17820 -13.12233 -13.06601 -12.86165 -12.64912 -12.49131 -12.40598 -12.37023 -12.29742 -12.17764 -11.97905 -11.90193 -11.79977 -11.71902 -11.44616 -11.29394 -10.80809 -9.65120 -9.14675 -8.99247 -8.85130 -8.31569 -6.35027 -0.12314 0.19906 0.58174 1.07654 1.32498 1.33899 1.44473 1.44623 2.31524 2.64819 2.87158 3.00579 3.12156 3.24022 3.58071 3.73015 3.82332 3.96671 3.97865 4.02699 4.05551 4.19741 4.22372 4.32542 4.34329 4.36994 4.52664 4.53428 4.67665 4.73040 4.74016 4.75538 4.81632 4.86408 4.87757 4.88165 4.91719 4.98576 5.00649 5.07468 5.29451 5.29834 5.36356 5.47906 5.64140 5.82158 5.94185 6.07312 6.25375 6.57701 6.69885 7.28576 8.84763 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002977 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.824611 B = 9402.542630 C =10503.383342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 C -0.142 4.142 4 C 0.285 3.715 5 N -0.293 5.293 6 N -0.369 5.369 7 C 0.315 3.685 8 N -0.559 5.559 9 C 0.081 3.919 10 C 0.077 3.923 11 N -0.539 5.539 12 C 0.173 3.827 13 C -0.517 4.517 14 H 0.039 0.961 15 C 0.011 3.989 16 N -0.945 5.945 17 Si 0.945 3.055 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.258 1.258 21 C 0.053 3.947 22 C 0.077 3.923 23 C 0.475 3.525 24 S -0.655 6.655 25 N -0.488 5.488 26 C 0.070 3.930 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.012 0.988 39 H 0.061 0.939 40 H -0.019 1.019 41 H 0.033 0.967 42 H 0.268 0.732 43 H 0.024 0.976 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.424 6.972 -19.382 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 C -0.200 4.200 4 C 0.005 3.995 5 N -0.113 5.113 6 N -0.160 5.160 7 C 0.106 3.894 8 N -0.286 5.286 9 C -0.048 4.048 10 C -0.051 4.051 11 N -0.264 5.264 12 C 0.046 3.954 13 C -0.555 4.555 14 H 0.057 0.943 15 C -0.187 4.187 16 N -0.585 5.585 17 Si 0.769 3.231 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.182 1.182 21 C -0.075 4.075 22 C -0.050 4.050 23 C 0.110 3.890 24 S -0.529 6.529 25 N -0.187 5.187 26 C -0.069 4.069 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.079 0.921 40 H -0.001 1.001 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.075 0.925 47 H 0.126 0.874 48 H 0.112 0.888 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.314 6.883 -18.317 28.206 hybrid contribution -0.884 -0.739 -0.026 1.153 sum 19.430 6.144 -18.343 27.418 Atomic orbital electron populations 1.21902 0.91806 1.02689 1.04156 1.20290 0.97246 0.96700 0.88820 1.21862 1.01540 0.92408 1.04158 1.25767 0.90561 0.86471 0.96683 1.77270 1.19471 1.15443 0.99135 1.49487 1.38493 1.20097 1.07919 1.22263 0.96884 0.99158 0.71112 1.61926 1.01719 1.49077 1.15897 1.21961 0.87748 0.95482 0.99561 1.21835 0.97790 0.97429 0.88071 1.62072 1.02338 1.49379 1.12597 1.19920 0.89142 0.91252 0.95117 1.21206 0.90939 1.02475 1.40869 0.94277 1.25798 0.94974 1.01922 0.95963 1.70036 0.98994 1.39913 1.49603 0.85742 0.78006 0.79688 0.79679 1.18597 1.20589 1.18167 1.22246 0.88718 0.95518 1.01062 1.22072 0.99167 0.99868 0.83881 1.23461 0.90182 0.91245 0.84104 1.93448 1.50846 1.24291 1.84277 1.46397 1.41234 1.23980 1.07066 1.22623 1.02919 0.98646 0.82754 0.87965 0.92912 0.93111 0.84548 0.91904 0.88188 0.92881 0.85093 0.88792 0.93810 0.91212 0.96937 0.92060 1.00147 0.94849 0.92342 0.95733 0.88961 0.87372 0.92454 0.87400 0.88846 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.18 71.98 0.66 -0.71 16 2 C -0.01 -0.07 3.25 -11.54 -0.04 -0.11 16 3 C -0.14 -0.83 9.17 71.98 0.66 -0.17 16 4 C 0.28 4.57 6.49 137.70 0.89 5.46 16 5 N -0.29 -6.49 11.49 -49.62 -0.57 -7.06 16 6 N -0.37 -9.36 3.35 -359.54 -1.20 -10.57 16 7 C 0.32 7.66 5.94 170.80 1.01 8.68 16 8 N -0.56 -16.42 4.85 -908.05 -4.40 -20.83 16 9 C 0.08 2.67 5.51 86.31 0.48 3.15 16 10 C 0.08 3.22 5.43 86.31 0.47 3.69 16 11 N -0.54 -23.16 4.70 -900.23 -4.23 -27.39 16 12 C 0.17 8.59 3.79 85.56 0.32 8.91 16 13 C -0.52 -30.40 9.03 25.60 0.23 -30.17 16 14 H 0.04 2.55 7.37 -2.91 -0.02 2.53 16 15 C 0.01 0.65 5.47 84.65 0.46 1.12 16 16 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 17 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 21 C 0.05 1.81 5.61 86.31 0.48 2.29 16 22 C 0.08 2.10 5.61 86.31 0.48 2.58 16 23 C 0.47 12.52 7.86 178.99 1.41 13.92 16 24 S -0.65 -21.84 29.60 -56.49 -1.67 -23.52 16 25 N -0.49 -8.75 3.14 -539.80 -1.69 -10.44 16 26 C 0.07 0.64 10.56 127.77 1.35 1.99 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.14 0.03 6.73 -2.39 -0.02 0.01 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.15 8.14 -2.38 -0.02 0.14 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.13 3.05 7.58 -2.39 -0.02 3.03 16 35 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 2.29 6.69 -2.39 -0.02 2.28 16 38 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.06 2.88 6.79 -2.38 -0.02 2.87 16 40 H -0.02 -0.98 7.18 -2.39 -0.02 -1.00 16 41 H 0.03 1.61 7.45 -2.38 -0.02 1.59 16 42 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 43 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 45 H 0.11 2.41 8.07 -2.38 -0.02 2.39 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.09 1.27 7.63 -2.39 -0.02 1.25 16 49 H 0.13 0.16 7.05 -2.39 -0.02 0.15 16 Total: -1.00 -81.73 398.81 -1.85 -83.58 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.86 Total: 7.88 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 8.88 Total: 20.63 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -11.80 Total: -135.35 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Atomic # 16 Polarization: -21.84 SS G_CDS: -1.67 Total: -23.52 kcal Total: -81.73 -1.85 -83.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.504 kcal (2) G-P(sol) polarization free energy of solvation -81.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds