Wall clock time and date at job start Tue Mar 31 2020 23:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 C 1.53005 * 109.47171 * 240.00100 * 2 1 3 5 5 C 1.50703 * 109.47548 * 120.00346 * 2 1 3 6 6 N 1.30691 * 125.59899 * 255.02652 * 5 2 1 7 7 C 1.34367 * 110.01121 * 179.72819 * 6 5 2 8 8 S 1.71206 * 125.84589 * 180.27412 * 7 6 5 9 9 N 1.34972 * 108.30711 * 0.40277 * 7 6 5 10 10 C 1.46503 * 126.84514 * 179.87165 * 9 7 6 11 11 N 1.46899 * 109.47390 * 284.68491 * 10 9 7 12 12 C 1.46954 * 111.00136 * 189.99910 * 11 10 9 13 13 C 1.53050 * 109.36493 * 183.19039 * 12 11 10 14 14 N 1.46960 * 109.36183 * 301.59865 * 13 12 11 15 15 C 1.46899 * 110.99909 * 183.18613 * 14 13 12 16 16 C 1.50702 * 109.47509 * 169.99961 * 15 14 13 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48494 * 109.47225 * 180.27306 * 20 18 16 22 22 H 1.48506 * 109.46866 * 300.27330 * 20 18 16 23 23 H 1.48498 * 109.47306 * 60.26614 * 20 18 16 24 24 C 1.46962 * 110.88081 * 59.32313 * 14 13 12 25 25 C 1.46961 * 110.99813 * 313.80389 * 11 10 9 26 26 N 1.35859 * 125.60591 * 74.99712 * 5 2 1 27 27 H 0.97003 * 126.71020 * 0.02562 * 26 5 2 28 28 H 1.09007 * 109.46679 * 299.99743 * 1 2 3 29 29 H 1.09000 * 109.47367 * 59.99805 * 1 2 3 30 30 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47011 * 300.00413 * 3 2 1 33 33 H 1.09004 * 109.47039 * 59.99916 * 3 2 1 34 34 H 1.08993 * 109.47211 * 300.00297 * 4 2 1 35 35 H 1.09000 * 109.46897 * 59.99807 * 4 2 1 36 36 H 1.08995 * 109.47172 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.46754 * 164.68466 * 10 9 7 38 38 H 1.08999 * 109.47125 * 44.68773 * 10 9 7 39 39 H 1.09002 * 109.48561 * 63.22583 * 12 11 10 40 40 H 1.08995 * 109.49120 * 303.15742 * 12 11 10 41 41 H 1.08996 * 109.48853 * 181.63309 * 13 12 11 42 42 H 1.08996 * 109.49241 * 61.56585 * 13 12 11 43 43 H 1.09009 * 109.47165 * 50.00381 * 15 14 13 44 44 H 1.08998 * 109.47687 * 290.00832 * 15 14 13 45 45 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 46 46 H 1.09002 * 109.48757 * 60.64076 * 24 14 13 47 47 H 1.09004 * 109.48878 * 180.70798 * 24 14 13 48 48 H 1.08998 * 109.48972 * 296.77446 * 25 11 10 49 49 H 1.08996 * 109.49248 * 56.84241 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 2.5449 -0.1343 2.2856 7 6 2.8830 -1.0617 3.1972 8 16 3.5812 -0.7533 4.7297 9 7 2.5806 -2.2782 2.6968 10 6 2.7837 -3.5729 3.3517 11 7 4.2095 -3.9243 3.3101 12 6 4.4224 -5.3131 3.7409 13 6 5.9228 -5.6142 3.7597 14 7 6.4815 -5.3903 2.4190 15 6 7.9072 -5.7416 2.3774 16 6 8.3846 -5.7361 0.9480 17 1 7.6975 -5.4952 0.1503 18 6 9.6982 -6.0385 0.6587 19 7 10.5350 -6.3314 1.6302 20 14 10.2880 -6.0390 -1.1138 21 1 11.7278 -6.4000 -1.1563 22 1 9.5058 -7.0303 -1.8954 23 1 10.0991 -4.6873 -1.6987 24 6 6.2686 -4.0015 1.9881 25 6 4.7682 -3.7003 1.9694 26 7 2.0265 -2.0550 1.4252 27 1 1.7031 -2.7291 0.8072 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 2.2058 -4.3373 2.8324 38 1 2.4549 -3.5109 4.3890 39 1 3.9243 -5.9896 3.0465 40 1 4.0114 -5.4506 4.7410 41 1 6.0817 -6.6525 4.0511 42 1 6.4170 -4.9560 4.4742 43 1 8.0494 -6.7347 2.8040 44 1 8.4779 -5.0136 2.9539 45 1 10.2288 -6.3308 2.5506 46 1 6.7667 -3.3249 2.6826 47 1 6.6797 -3.8639 0.9880 48 1 4.2741 -4.3585 1.2548 49 1 4.6093 -2.6621 1.6780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:46 Heat of formation + Delta-G solvation = 119.310215 kcal Electronic energy + Delta-G solvation = -28294.089044 eV Core-core repulsion = 24613.231655 eV Total energy + Delta-G solvation = -3680.857390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.97026 -39.15123 -37.73063 -35.74206 -33.74189 -32.99099 -32.12614 -30.70024 -28.49459 -28.05844 -27.84756 -26.09877 -24.45528 -23.75231 -23.53083 -22.97644 -21.77039 -20.42336 -19.44063 -18.74047 -17.17032 -16.88261 -16.78925 -16.43226 -15.86603 -15.67881 -14.97052 -14.62744 -14.58195 -14.53023 -14.16005 -13.97111 -13.75444 -13.63390 -13.07322 -12.78717 -12.68540 -12.36437 -12.31922 -12.23805 -11.78293 -11.74412 -11.69265 -11.39133 -11.32045 -11.29985 -11.16805 -11.05635 -10.99576 -10.78551 -10.71624 -10.45534 -10.25409 -10.08408 -8.74855 -8.53519 -8.41717 -7.54545 -7.43674 -7.33001 -6.40902 -4.10431 0.26162 0.54090 2.16504 2.29887 2.96616 3.38786 3.39644 3.41813 3.59324 3.60857 3.89500 4.12583 4.18626 4.35252 4.42944 4.46774 4.70095 4.79000 4.83254 4.94431 5.00513 5.04116 5.14447 5.17576 5.27918 5.31088 5.34893 5.35504 5.37069 5.42015 5.48708 5.56903 5.57363 5.70670 5.77887 5.87979 5.94098 6.22234 6.32433 6.34793 6.49431 6.71809 6.82370 6.98164 7.06183 7.18549 7.69970 7.87903 8.25306 8.50526 8.82001 9.60524 10.98327 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.003122 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.929132 B = 8967.097674 C =10352.866365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.005 3.995 3 C -0.135 4.135 4 C -0.152 4.152 5 C 0.394 3.606 6 N -0.507 5.507 7 C 0.472 3.528 8 S -0.524 6.524 9 N -0.372 5.372 10 C 0.306 3.694 11 N -0.537 5.537 12 C 0.069 3.931 13 C 0.055 3.945 14 N -0.532 5.532 15 C 0.184 3.816 16 C -0.590 4.590 17 H 0.054 0.946 18 C 0.015 3.985 19 N -0.912 5.912 20 Si 1.072 2.928 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.072 3.928 25 C 0.062 3.938 26 N -0.496 5.496 27 H 0.447 0.553 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.021 0.979 44 H -0.017 1.017 45 H 0.268 0.732 46 H 0.034 0.966 47 H 0.087 0.913 48 H 0.034 0.966 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.737 8.949 -6.446 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 C -0.192 4.192 4 C -0.210 4.210 5 C 0.115 3.885 6 N -0.237 5.237 7 C 0.114 3.886 8 S -0.392 6.392 9 N -0.171 5.171 10 C 0.095 3.905 11 N -0.265 5.265 12 C -0.059 4.059 13 C -0.074 4.074 14 N -0.257 5.257 15 C 0.058 3.942 16 C -0.629 4.629 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.548 5.548 20 Si 0.900 3.100 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.215 1.215 24 C -0.057 4.057 25 C -0.066 4.066 26 N -0.220 5.220 27 H 0.295 0.705 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.001 0.999 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.106 0.894 48 H 0.052 0.948 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.761 9.298 -6.071 26.228 hybrid contribution -1.934 -1.224 -0.207 2.298 sum -25.695 8.073 -6.278 27.656 Atomic orbital electron populations 1.21975 0.91267 1.02818 1.04146 1.19629 0.96810 0.96516 0.86852 1.21798 1.02511 0.91549 1.03368 1.22048 1.02710 1.00025 0.96196 1.24790 0.88683 0.79056 0.96011 1.71957 1.21434 1.29580 1.00701 1.24874 0.86958 0.79350 0.97382 1.93077 1.54592 1.88893 1.02594 1.49705 1.53048 1.09833 1.04493 1.22519 0.91633 0.77894 0.98444 1.62413 1.11691 1.24860 1.27507 1.22150 0.98296 0.85357 1.00072 1.22085 0.92560 1.00721 0.92070 1.62255 1.20122 1.21038 1.22305 1.19804 0.81501 0.94746 0.98112 1.21914 0.97386 1.51660 0.91929 0.92752 1.25847 0.93177 0.93780 1.06124 1.70791 1.37663 1.45311 1.01014 0.83499 0.76254 0.76400 0.73846 1.20711 1.21450 1.21502 1.21913 0.92017 0.89803 1.01932 1.22208 0.97491 0.99239 0.87656 1.46012 1.56718 1.09206 1.10034 0.70457 0.91174 0.89985 0.92265 0.91280 0.90985 0.90560 0.92355 0.89791 0.91060 0.91887 0.85342 0.93938 0.90079 0.90515 0.94418 0.96100 0.99911 0.92219 0.94773 0.89431 0.94781 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.44 8.46 37.16 0.31 -0.13 16 2 C 0.01 0.03 0.99 -155.66 -0.15 -0.13 16 3 C -0.13 -0.76 8.02 37.16 0.30 -0.47 16 4 C -0.15 -0.54 8.35 37.16 0.31 -0.23 16 5 C 0.39 3.37 6.50 -154.51 -1.00 2.37 16 6 N -0.51 -6.71 10.50 -10.89 -0.11 -6.82 16 7 C 0.47 7.18 7.98 -87.11 -0.70 6.49 16 8 S -0.52 -10.18 30.75 -107.50 -3.31 -13.48 16 9 N -0.37 -4.25 2.32 -65.10 -0.15 -4.40 16 10 C 0.31 3.29 6.15 -63.31 -0.39 2.91 16 11 N -0.54 -7.66 4.93 -238.38 -1.18 -8.84 16 12 C 0.07 0.94 5.58 -3.77 -0.02 0.92 16 13 C 0.05 0.97 5.61 -3.77 -0.02 0.95 16 14 N -0.53 -11.42 4.70 -235.90 -1.11 -12.53 16 15 C 0.18 4.78 4.03 -4.98 -0.02 4.76 16 16 C -0.59 -16.66 8.47 -34.44 -0.29 -16.95 16 17 H 0.05 1.52 7.13 -52.49 -0.37 1.15 16 18 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 19 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 20 Si 1.07 25.14 29.90 -169.99 -5.08 20.05 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.07 1.46 5.43 -3.76 -0.02 1.43 16 25 C 0.06 0.97 5.34 -3.76 -0.02 0.95 16 26 N -0.50 -3.75 7.10 32.85 0.23 -3.52 16 27 H 0.45 1.79 8.52 -182.30 -1.55 0.23 16 28 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.06 0.13 7.68 -51.93 -0.40 -0.26 16 35 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.57 7.90 -51.92 -0.41 0.16 16 44 H -0.02 -0.47 7.98 -51.93 -0.41 -0.89 16 45 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.97 6.87 -51.93 -0.36 0.61 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -37.62 401.70 -15.41 -53.03 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -9.70 Total: -5.60 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.81 Total: 3.21 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -1.56 Total: -63.26 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Atomic # 16 Polarization: -10.18 SS G_CDS: -3.31 Total: -13.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.62 -15.41 -53.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.340 kcal (2) G-P(sol) polarization free energy of solvation -37.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds