Wall clock time and date at job start Tue Mar 31 2020 23:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 C 1.53005 * 109.47171 * 240.00100 * 2 1 3 5 5 C 1.50703 * 109.47548 * 120.00346 * 2 1 3 6 6 N 1.30691 * 125.59899 * 255.02652 * 5 2 1 7 7 C 1.34367 * 110.01121 * 179.72819 * 6 5 2 8 8 S 1.71206 * 125.84589 * 180.27412 * 7 6 5 9 9 N 1.34972 * 108.30711 * 0.40277 * 7 6 5 10 10 C 1.46503 * 126.84514 * 179.87165 * 9 7 6 11 11 N 1.46899 * 109.47390 * 284.68491 * 10 9 7 12 12 C 1.46954 * 111.00136 * 189.99910 * 11 10 9 13 13 C 1.53050 * 109.36493 * 183.19039 * 12 11 10 14 14 N 1.46960 * 109.36183 * 301.59865 * 13 12 11 15 15 C 1.46899 * 110.99909 * 183.18613 * 14 13 12 16 16 C 1.50702 * 109.47509 * 169.99961 * 15 14 13 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48494 * 109.47225 * 180.27306 * 20 18 16 22 22 H 1.48506 * 109.46866 * 300.27330 * 20 18 16 23 23 H 1.48498 * 109.47306 * 60.26614 * 20 18 16 24 24 C 1.46962 * 110.88081 * 59.32313 * 14 13 12 25 25 C 1.46961 * 110.99813 * 313.80389 * 11 10 9 26 26 N 1.35859 * 125.60591 * 74.99712 * 5 2 1 27 27 H 0.97003 * 126.71020 * 0.02562 * 26 5 2 28 28 H 1.09007 * 109.46679 * 299.99743 * 1 2 3 29 29 H 1.09000 * 109.47367 * 59.99805 * 1 2 3 30 30 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47011 * 300.00413 * 3 2 1 33 33 H 1.09004 * 109.47039 * 59.99916 * 3 2 1 34 34 H 1.08993 * 109.47211 * 300.00297 * 4 2 1 35 35 H 1.09000 * 109.46897 * 59.99807 * 4 2 1 36 36 H 1.08995 * 109.47172 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.46754 * 164.68466 * 10 9 7 38 38 H 1.08999 * 109.47125 * 44.68773 * 10 9 7 39 39 H 1.09002 * 109.48561 * 63.22583 * 12 11 10 40 40 H 1.08995 * 109.49120 * 303.15742 * 12 11 10 41 41 H 1.08996 * 109.48853 * 181.63309 * 13 12 11 42 42 H 1.08996 * 109.49241 * 61.56585 * 13 12 11 43 43 H 1.09009 * 109.47165 * 50.00381 * 15 14 13 44 44 H 1.08998 * 109.47687 * 290.00832 * 15 14 13 45 45 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 46 46 H 1.09002 * 109.48757 * 60.64076 * 24 14 13 47 47 H 1.09004 * 109.48878 * 180.70798 * 24 14 13 48 48 H 1.08998 * 109.48972 * 296.77446 * 25 11 10 49 49 H 1.08996 * 109.49248 * 56.84241 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 2.5449 -0.1343 2.2856 7 6 2.8830 -1.0617 3.1972 8 16 3.5812 -0.7533 4.7297 9 7 2.5806 -2.2782 2.6968 10 6 2.7837 -3.5729 3.3517 11 7 4.2095 -3.9243 3.3101 12 6 4.4224 -5.3131 3.7409 13 6 5.9228 -5.6142 3.7597 14 7 6.4815 -5.3903 2.4190 15 6 7.9072 -5.7416 2.3774 16 6 8.3846 -5.7361 0.9480 17 1 7.6975 -5.4952 0.1503 18 6 9.6982 -6.0385 0.6587 19 7 10.5350 -6.3314 1.6302 20 14 10.2880 -6.0390 -1.1138 21 1 11.7278 -6.4000 -1.1563 22 1 9.5058 -7.0303 -1.8954 23 1 10.0991 -4.6873 -1.6987 24 6 6.2686 -4.0015 1.9881 25 6 4.7682 -3.7003 1.9694 26 7 2.0265 -2.0550 1.4252 27 1 1.7031 -2.7291 0.8072 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 2.2058 -4.3373 2.8324 38 1 2.4549 -3.5109 4.3890 39 1 3.9243 -5.9896 3.0465 40 1 4.0114 -5.4506 4.7410 41 1 6.0817 -6.6525 4.0511 42 1 6.4170 -4.9560 4.4742 43 1 8.0494 -6.7347 2.8040 44 1 8.4779 -5.0136 2.9539 45 1 10.2288 -6.3308 2.5506 46 1 6.7667 -3.3249 2.6826 47 1 6.6797 -3.8639 0.9880 48 1 4.2741 -4.3585 1.2548 49 1 4.6093 -2.6621 1.6780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872734513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:45 Heat of formation + Delta-G solvation = 92.140086 kcal Electronic energy + Delta-G solvation = -28295.267230 eV Core-core repulsion = 24613.231655 eV Total energy + Delta-G solvation = -3682.035575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.94955 -40.47672 -38.39333 -37.13756 -35.20160 -34.43478 -33.36444 -32.10210 -29.99329 -28.34477 -28.27798 -27.62092 -25.91481 -25.02465 -24.54621 -24.19557 -23.57946 -21.25831 -20.78241 -19.53259 -18.98079 -18.24663 -17.92630 -17.49105 -16.88919 -16.45672 -16.16019 -16.03725 -15.77144 -15.70901 -15.44797 -15.14937 -14.98092 -14.87575 -14.05833 -13.96991 -13.45311 -13.28827 -13.14313 -13.10922 -13.04928 -12.75582 -12.65736 -12.52186 -12.50554 -12.42702 -12.36602 -12.29634 -12.20110 -12.07659 -11.99026 -11.87881 -11.83659 -11.48409 -10.83729 -10.62525 -9.62946 -9.30225 -8.90411 -8.76426 -8.73521 -6.44871 -0.70493 -0.37831 1.10036 1.19716 1.50122 1.59222 1.78528 2.10690 2.48808 2.53094 2.69044 2.99552 3.11988 3.27433 3.40484 3.64800 3.77197 3.80547 3.87363 3.90907 3.99071 4.08533 4.11409 4.22725 4.37260 4.40631 4.57706 4.63044 4.66207 4.66314 4.70900 4.75195 4.79914 4.81144 4.88732 4.90034 4.93777 4.97918 4.98636 5.21406 5.31038 5.40282 5.55941 5.56919 5.70379 5.76924 5.89999 6.22473 6.27384 6.31625 6.53226 7.36823 8.65399 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.003122 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.929132 B = 8967.097674 C =10352.866365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.011 3.989 3 C -0.137 4.137 4 C -0.151 4.151 5 C 0.408 3.592 6 N -0.541 5.541 7 C 0.488 3.512 8 S -0.650 6.650 9 N -0.363 5.363 10 C 0.305 3.695 11 N -0.563 5.563 12 C 0.082 3.918 13 C 0.049 3.951 14 N -0.528 5.528 15 C 0.194 3.806 16 C -0.599 4.599 17 H 0.058 0.942 18 C -0.039 4.039 19 N -0.937 5.937 20 Si 1.122 2.878 21 H -0.285 1.285 22 H -0.264 1.264 23 H -0.270 1.270 24 C 0.075 3.925 25 C 0.084 3.916 26 N -0.463 5.463 27 H 0.471 0.529 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.012 0.988 43 H 0.005 0.995 44 H -0.054 1.054 45 H 0.252 0.748 46 H -0.002 1.002 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.701 7.778 -10.449 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.007 3.993 3 C -0.195 4.195 4 C -0.209 4.209 5 C 0.131 3.869 6 N -0.271 5.271 7 C 0.123 3.877 8 S -0.520 6.520 9 N -0.158 5.158 10 C 0.096 3.904 11 N -0.291 5.291 12 C -0.045 4.045 13 C -0.079 4.079 14 N -0.253 5.253 15 C 0.068 3.932 16 C -0.637 4.637 17 H 0.076 0.924 18 C -0.236 4.236 19 N -0.575 5.575 20 Si 0.943 3.057 21 H -0.210 1.210 22 H -0.189 1.189 23 H -0.195 1.195 24 C -0.053 4.053 25 C -0.044 4.044 26 N -0.188 5.188 27 H 0.325 0.675 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.031 0.969 43 H 0.023 0.977 44 H -0.036 1.036 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -27.819 8.062 -10.140 30.687 hybrid contribution -0.823 -0.860 0.884 1.483 sum -28.642 7.201 -9.256 30.950 Atomic orbital electron populations 1.22016 0.88953 1.04207 1.04715 1.19931 0.98288 0.95547 0.85524 1.21831 1.01192 0.92470 1.03957 1.22108 1.01632 1.01371 0.95806 1.25663 0.86364 0.79148 0.95717 1.71878 1.23069 1.30229 1.01906 1.24106 0.86574 0.80800 0.96238 1.93250 1.60884 1.90531 1.07374 1.49567 1.51325 1.09248 1.05703 1.22750 0.89904 0.78041 0.99736 1.62223 1.14510 1.25661 1.26731 1.22063 0.94668 0.85292 1.02509 1.22240 0.95641 1.00658 0.89377 1.62227 1.16779 1.21579 1.24668 1.19522 0.84230 0.92806 0.96691 1.22230 0.97733 1.50957 0.92763 0.92386 1.27515 0.93743 0.92632 1.09724 1.70930 1.38291 1.47487 1.00759 0.82882 0.75842 0.77939 0.69085 1.21008 1.18864 1.19495 1.21837 0.95545 0.88327 0.99624 1.21867 0.93956 0.99399 0.89192 1.46072 1.54650 1.09777 1.08318 0.67505 0.92516 0.87625 0.90476 0.93417 0.88091 0.92318 0.90238 0.87544 0.92853 0.86635 0.85137 0.91570 0.87116 0.89802 0.96929 0.97728 1.03610 0.93885 0.98388 0.91374 0.92361 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.24 8.46 71.98 0.61 0.37 16 2 C 0.01 0.07 0.99 -52.93 -0.05 0.02 16 3 C -0.14 -1.31 8.02 71.98 0.58 -0.73 16 4 C -0.15 -0.38 8.35 71.98 0.60 0.22 16 5 C 0.41 5.90 6.50 137.81 0.90 6.80 16 6 N -0.54 -14.04 10.50 -188.38 -1.98 -16.02 16 7 C 0.49 14.80 7.98 179.12 1.43 16.23 16 8 S -0.65 -26.94 30.75 -56.49 -1.74 -28.68 16 9 N -0.36 -7.36 2.32 -359.88 -0.84 -8.19 16 10 C 0.30 5.46 6.15 170.81 1.05 6.51 16 11 N -0.56 -14.91 4.93 -908.08 -4.48 -19.39 16 12 C 0.08 2.00 5.58 86.31 0.48 2.49 16 13 C 0.05 1.76 5.61 86.31 0.48 2.25 16 14 N -0.53 -22.99 4.70 -900.25 -4.23 -27.22 16 15 C 0.19 10.59 4.03 85.56 0.34 10.93 16 16 C -0.60 -34.41 8.47 25.60 0.22 -34.19 16 17 H 0.06 3.23 7.13 -2.91 -0.02 3.21 16 18 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 19 N -0.94 -59.13 13.65 21.45 0.29 -58.84 16 20 Si 1.12 50.01 29.90 68.60 2.05 52.06 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 C 0.08 3.12 5.43 86.31 0.47 3.58 16 25 C 0.08 2.46 5.34 86.31 0.46 2.92 16 26 N -0.46 -5.06 7.10 -49.99 -0.36 -5.41 16 27 H 0.47 0.83 8.52 -213.07 -1.82 -0.98 16 28 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.08 -0.11 8.14 -2.39 -0.02 -0.12 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.78 8.07 -2.38 -0.02 0.76 16 34 H 0.08 -0.11 7.68 -2.39 -0.02 -0.13 16 35 H 0.11 -0.12 8.14 -2.39 -0.02 -0.13 16 36 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.12 1.00 8.08 -2.39 -0.02 0.98 16 38 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 43 H 0.00 0.27 7.90 -2.38 -0.02 0.25 16 44 H -0.05 -3.26 7.98 -2.39 -0.02 -3.28 16 45 H 0.25 16.25 7.22 -92.70 -0.67 15.58 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.07 3.03 6.79 -2.39 -0.02 3.01 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.06 1.73 6.87 -2.39 -0.02 1.71 16 Total: -1.00 -91.80 401.70 -4.03 -95.82 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -0.78 Total: 0.28 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 8.03 Total: 15.59 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -11.59 Total: -135.08 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Atomic # 16 Polarization: -26.94 SS G_CDS: -1.74 Total: -28.68 kcal Total: -91.80 -4.03 -95.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.964 kcal (2) G-P(sol) polarization free energy of solvation -91.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds